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Query: 2wwb_B mol:protein length:68 PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .
# Score Template Links and tools%idFirst MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVGGLast
1 -54.6002wwb_B mol:protein length:68 PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA  ali model  100  1MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVGG 68
2 -52.8002ww9_B mol:protein length:80 PROTEIN TRANSPORT PROTEIN SSS1  ali model follow..  45  15NNQVEKLVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKLIHIPIRYVIV.. 80
3 -45.6001rh5_B mol:protein length:74 Preprotein translocase secE subunit  ali model follow..  23  2KTDFNQKIEQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGILKPP 69
4 -42.2003mp7_B mol:protein length:61 Preprotein translocase subunit secE  ali model follow..  26  1...MAELQERIRHFWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLIGMLIRIVGILILG..... 60
5 -36.2003bo0_B mol:protein length:65 PREPROTEIN TRANSLOCASE SecE SUBUNIT  ali model follow..  21  1.TKGKATVAFAREARTEVRKVIWPTRKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGIL... 64
6 -10.1005mg3_E mol:protein length:140 Protein translocase subunit SecE  ali model follow..  20  73........KATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFITG. 131
7 -9.3803dl8_C mol:protein length:65 SecE  ali model follow..  21  1.......MEKLKEFLKGVRDELKRVVWPSRELVVKATISVIIFSLAIGVYLWILDLTFTKIISFILS. 60
8 -9.1905eul_E mol:protein length:70 Preprotein translocase SecE subunit  ali model follow..  16  1.......MQRVTNFFKEVVRELKKVSWPNRKELVNYTAVVLATVAFFTVFFAVIDLGISQLIRLVFE. 60
9 -8.8503din_D mol:protein length:65 Preprotein translocase subunit secE  ali model follow..  21  1.......MEKLRKFFREVIAEAKKISWPSRKELLTSFGVVLVILAVTSVYFFVLDFIFSGVVSAIFK. 60
10 -8.8002zjs_E mol:protein length:60 Preprotein translocase SecE subunit  ali model follow..  10  1......MFARLIRYFQEARAELARVTWPTREQVVEGTQAILLFTLAFMVILGLYDTVFRFLIGLL... 59
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;