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Query: 3aq3_A mol:protein length:211 6b protein, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210
# Score Template Links and tools%idFirst GSHMTVPTWQVRDLRRILRVSELRQHLRQARTDFRSTLSQFVYFNRSVVNPNAYDDEYLLSDQRLTYVYVDEVTAQLCGLNRLLPSNSPAFGTVATAMPPWLLDPQEMNAILQQSCGQGGFVNYHHGPSTNSFFLAILMSQLFIRIRTDVIRGQGYGWYARLGNYVEEGEDNEGIENEEEEEEEEEETREFQLSDLIHYPIVALGSCHLTRLast
1 -121.0003aq3_A mol:protein length:211 6b protein  ali model  100  1GSHMTVPTWQVRDLRRILRVSELRQHLRQARTDFRSTLSQFVYFNRSVVNPNAYDDEYLLSDQRLTYVYVDEVTAQLCGLNRLLPSNSPAFGTVATAMPPWLLDPQEMNAILQQSCGQGGFVNYHHGPSTNSFFLAILMSQLFIRIRTDVIRGQGYGWYARLGNYVEEGEDNEGIENEEEEEEEEEETREFQLSDLIHYPIVALGSCHLTR 211
2 -110.0003aq2_A mol:protein length:207 6b protein  ali model follow..  95  1GSHMTVPTWQVRDLRRILRVSELSQHLRQARTDFRSTLSQLVYFNRSVVNPNEYDDEYLLSDQRLTYVYVDEVTAQLCGLNRLLPSNSPAFGTVATAMPPWLLDPQEMNAILQQSCGQGGFVNYHHGPSTNGFFLAILMSQLFIRIRTDVIRGQGYGWYARQGNYVEEGED----NEGIENEEEEEETREFQLSDLIHYPIVALGSCHLTR 207
3 -7.7401yvw_A mol:protein length:115 Phosphoribosyl-ATP pyrophosphatase  ali model follow..  10  1..................................................................................................................................MENAFKLLYKTIEERKGSPLPESYTNYLFSKGEDKILKKIGEECAEVIIACKNNDKEEVVKEMVDVFYHCFVLLAEKNIA. 80
4 -7.4301onv_B mol:protein length:83 serine phosphatase FCP1a  ali model follow..  30  50.......................................................................................................................................................................ASESSRESSNEDEGSSSEADEMEAELNDLM.............. 83
5 -7.0904xxb_B mol:protein length:148 E3 ubiquitin-protein ligase Mdm2  ali model follow..  16  1...............................................................................................................................................................................SFEEDPEISLADYWKCTSCNEMNPPLPSH-RCWALR 37
6 -6.9401y6x_A mol:protein length:93 Phosphoribosyl-ATP pyrophosphatase  ali model follow..  18  9.....................................................................................................................................TFEDLFAELGDRARTRPADSTTVAALDGGVHALGKKLLEEAGEVWLAAEHESNDALAEEISQLLYWTQVLMISRGLS. 85
7 -6.7802kqv_A mol:protein length:198 Non-structural protein 3  ali model follow..  14  1GSHMGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQRK--------YKGIKIQEGIVDYGVRFFFYTSKEPVASIITK-----NSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFVETVSLAGSYRD---SYSGQRTELGVEFLKRGDKTLESPVEFHLGEVL--SLDKLKSL.... 196
8 -6.7501yxb_A mol:protein length:98 Phosphoribosyl-ATP pyrophosphatase  ali model follow..  11  24.......................................................................................................................................................TSRTAELVDKGVHAIGKKVVEEAAEVWMAAEYEGKDAAAEEISQLLYHVQVMMVARGIS. 82
9 -6.7302ltj_A mol:protein length:112 Beta-N-acetylhexosaminidase  ali model follow..  18  50............................................................................................................................................................NLPAGQENIITAGVKGERTHYISVLTENGKTTETVLDSQVTKEVVVEVGA..... 102
10 -6.6902a7w_A mol:protein length:116 Phosphoribosyl-ATP pyrophosphatase  ali model follow..  12  3...................................................................................................................................PDVLKNIADTLEARREAAPQSSYVASLFHKGEDAILKKVAEEAAETLMASKDKDKLHLVREVADLWFHTMVLLTYHGLR. 81
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.