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Query: 3b21_A mol:protein length:220 ORF169b, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GPLGSPEFMINGVSLQGTAGYEAHTEEGNVNVKKLLESLNSKSLGDMDKDSELAATLQKMINPSGGDGNCSGCALHACMAMLGYGVREAPVPNEISEYMTGFFHRHLEQIDSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGFNDGEKIMFLDVQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHYANSSSWKSKRLCLast
1 -141.0003b21_A mol:protein length:220 ORF169b  ali model  100  1GPLGSPEFMINGVSLQGTAGYEAHTEEGNVNVKKLLESLNSKSLGDMDKDSELAATLQKMINPSGGDGNCSGCALHACMAMLGYGVREAPVPNEISEYMTGFFHRHLEQIDSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGFNDGEKIMFLDVQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHYANSSSWKSKRLC 220
2 -6.8703e66_A mol:protein length:282 PRP8  ali model follow..  14  1GPLGSPEF---GLQI-----YQSSVQEPFLNSSNYAELFNNDIKLFVDDTNVYRVTVHKTF-----EGNVATKAINGCIFTLNPKTGHLFLQKRLSQLAKWKTAEEVSALVRSLPKEEQPKQIIVTRKAMLDPLEVHMLDFPNIAIRPTELRLPFSAAMSIDKLSDVVMKATE-FNIYDDWLDRISSYTAFSRLTLLLRALKTNEESAK........... 210
3 -6.3903zd0_A mol:protein length:86 P7 PROTEIN  ali model follow..  57  1GPLGSPEFVLNAASVAGAHGI....................................................................................................................................................................................................... 38
4 -6.2805ydk_A mol:protein length:87 E3 ubiquitin-protein ligase RNF168  ali model follow..  26  1GPGHMPEEEISKVAAERRASEEEENKASEEYIQRLLEKRRRAMEEQLKSDEELARKLSIDINNFCEG......................................................................................................................................................... 85
5 -6.1403acl_A mol:protein length:296 Pirin  ali model follow..  20  37....DPFLLFDEFKGGRPGGFPDHPHRGFETVSYLLEG------GSMAHEDFCGH--TGKMNP--GDLQWMTA---------GRGILHAEMPCSEEPA-------HGLQL---NLRSSEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQPIPKGWTSFI............................... 194
6 -6.1001dtl_A mol:protein length:161 CARDIAC TROPONIN C  ali model follow..  17  27....................FVLGAEDGSISTKELGKVMR--MLGQNPTPEELQEMIDEV--DEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGVE............................................................. 161
7 -6.0903gmf_A mol:protein length:205 Protein-disulfide isomerase  ali model follow..  25  165NVSGTPSFMIDGILLAGTHDWAS--------LRPQILARLNEG................................................................................................................................................................................. 199
8 -5.9505cz3_A mol:protein length:205 M64R  ali model follow..  15  1......................GHMEEGKLDVFLIDENVSIKHVNLFDGDSHLKTATCKYIT-LEPDWENIVEAKPIHMRLNGKKIR-----PLVAKTHTSLIYKVVIYVEEDALARFYSDVERSYTDVYPTFLVNTDTRRYYILDSGRTYTYIDPFISDGDKRRWLTREIEEAYDASTEEEEEDDT--EDMDTVHLYCLEEEDEEKIADTGNDNQK... 201
9 -5.9405jct_A mol:protein length:310 Pirin  ali model follow..  20  51....DPFLLFDEFKGGRPGGFPDHPHRGFETVSYLLEG------GSMAHEDFCGH--TGKMNP--GDLQWMTA---------GRGILHAEMPCSEEPA-------HGLQL---NLRSSEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQPIPKGWTSFI............................... 208
10 -5.9302jt0_A mol:protein length:161 Troponin C, slow skeletal and cardiac muscles  ali model follow..  15  27....................FVLGAEDGSISTKELGKVM--RMLGQNPTPEELQEMIDEV--DEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMWDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGVE............................................................. 161
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.