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Query: 3b4r_A mol:protein length:224 Putative zinc metalloprotease MJ0392, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNYSIRLFKIMGIPIELHITFILFLVVIIGLSIMNNSIFWAVLFILLFVSVVLHELGHSYVAKKYGVKIEKILLLPIGGVAMMDKIPKEGELRIGIAGPLVSFIIGIVLLIVSQFFDININGYPLLYTLSLLNLMLGGFNLIPAFPMDGGRILRAILSKKYGYLKSTKIAANIGKSLALIMLLFGLLSMNIILILVSLFVYFGAEQESRVVEVETIFKNIKAKDLast
1 -98.0003b4r_A mol:protein length:224 Putative zinc metalloprotease MJ0392  ali model  100  1MNYSIRLFKIMGIPIELHITFILFLVVIIGLSIMNNSIFWAVLFILLFVSVVLHELGHSYVAKKYGVKIEKILLLPIGGVAMMDKIPKEGELRIGIAGPLVSFIIGIVLLIVSQFFDININGYPLLYTLSLLNLMLGGFNLIPAFPMDGGRILRAILSKKYGYLKSTKIAANIGKSLALIMLLFGLLSMNIILILVSLFVYFGAEQESRVVEVETIFKNIKAKD 224
2 -8.9805z56_Z mol:protein length:619 BUD13 homolog  ali model follow..  12  499.....................................................KGLAQSRQQQQNVEDAMKEMQKPLARYIDDEDLDRMLREQEREGDPMANFIKK------AKENKNKKVRPRYSGPAPPPN-----FNIWPGYRWDGSNGFEQKRFARLASKKAVEELAYKWSV................................................ 616
3 -8.6204hx3_A mol:protein length:134 Extracellular small neutral protease  ali model follow..  15  82..................................................VTAHETGHVLGLPDHYQGPCSELMSGGGPGPSCTNPYPNAQERSRVNALWAN.......................................................................................................................... 133
4 -8.2504l63_A mol:protein length:266 ECXA  ali model follow..  14  152.............................................LKLRITIKHEIGHIL------------------GLLH-----NNEGGSYFPHGVGLEVARCRLLNQAPSIMLNGSNYDYIDRLSHYLERPVTETDIGPS-DIEGVRVMRRGGSGNSFTNRFSCLGL..................................................... 255
5 -8.2403p24_A mol:protein length:397 BFT-3  ali model follow..  17  329..................................DFKASGMSTTQLMYPGVMAHELGHIL------------------GANHADDP--------------KDLMYSKYTGYLFHLSEKNM----------------IIAKNLGWEIADG........................................................................... 396
6 -7.9005gm6_W mol:protein length:266 Pre-mRNA-splicing factor CWC26  ali model follow..  11  121.................................................TIYRDAQGHKIQEDSKIDDSSFSRSKYEDEKAAEREQYLKNLNMGDVQKPAITFTHD------ERTVKTSLLGRKLYDKPAPEN-----FAIMPGSRWDGSNGFEEKWFAKQNEINEKKVQSYTLQE................................................ 264
7 -7.6805fgw_A mol:protein length:262 Extracellular streptodornase D  ali model follow..  12  151....................................................LFDRSG-LIADSLGGRPFRNNLITGTRTQNVGNNDRKGGMENKVLDHIKRNPKVHVYYKATPVYQGSELLPRAVLVSALIDETVRVFNNVAGFNIDNGGLLSS..................................................................... 262
8 -7.5904on1_A mol:protein length:379 Putative metalloprotease II  ali model follow..  15  328...............................................HPYTLAHEIGHLL-----GADNEQDLMYTWPQVTPNHLSADNWVRMLECIQ.............................................................................................................................. 378
9 -7.0302di4_A mol:protein length:238 Cell division protein ftsH homolog  ali model follow..  17  18.................................................KIAIHEAGHALMGLVSD-KVHKISIIPRGMALGVTQQLPIEDKHIYDKKDLYNKILVLL----------------------------------------GGRAAEEVFGAENDLQRATDLAYRMVSMWGM............................................. 117
10 -6.6804qpj_A mol:protein length:243 Phosphotransferase  ali model follow..  18  38.........................................LDLGALLCSRICHDIISPIGAINNGLELLEEGGADEDAMALIKSSARNASARLQFAGAAGSAGVQIDTGDAQNVATEYFRNEKPEFTWLLLNMLLIGNGAIP----RGGSL........................................................................ 161
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.