Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: 3b79_A mol:protein length:129 Toxin secretion ATP-binding protein, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .
# Score Template Links and tools%idFirst SNAMKDPLLNSLIYVSRYYGLANSPEALVNGLPLSDGKLTPFLLPRAAERAGLVAKENRAELEKISSLILPAILVLKGGDSCVLNSINMETREAEVTTLESGMVPISIPLEDLLEQYTGRYFLVKKQFRLast
1 -68.5003b79_A mol:protein length:129 Toxin secretion ATP-binding protein  ali model  100  1SNAMKDPLLNSLIYVSRYYGLANSPEALVNGLPLSDGKLTPFLLPRAAERAGLVAKENRAELEKISSLILPAILVLKGGDSCVLNSINMETREAEVTTLESGMVPISIPLEDLLEQYTGRYFLVKKQFR 129
2 -58.0003zua_A mol:protein length:142 ALPHA-HEMOLYSIN TRANSLOCATION ATP-BINDING PROTEIN HLYB  ali model follow..  17  8SCHKIDYGLYALEILAQYHNVSVNPEEIKHRFDTDGTGLGLTSWLLAAKSLELKVKQVKKTIDRLNFISLPALVWREDGRHFILTKVSKEANRY-LIFDLEQRNPRVLEQSEFEALYQGHIILIASRSS 135
3 -45.5003k8u_A mol:protein length:156 Putative ABC transporter, ATP-binding protein ComA  ali model follow..  15  11QIDTRDCGPAVLASVAKHYGSNYSIAYLRELSKTNKQGTTALGIVEAAKKLGFETRSIKADMTLFNDLTYPFIVHVRLQHYYVVYGSQNN--QLIIGDPDPSVKVTRMSKERFQSEWTGLAIFLAPQPN 143
4 -25.9004ry2_A mol:protein length:730 ABC-type bacteriocin transporter  ali model follow..  21  18QYDLTDCGAACLSSIAQYYGLKMSLAKIREMTGTDTQGTNAYGLIHAAKQLGFSAKGVKASKEDLKDFRLPAIANVRLAHFVVIYSIKNRI----ITVADPGKGIVRYSMDDFCSIWTGGLVLLEPGEA 147
5 -14.9001pxv_A mol:protein length:183 cysteine protease  ali model follow..  8  21QFDNSWAAGFSMAALLNATKDTYNAHDIMRTLDLPNCATFPNQMIEYGKSQGRDIHYQEPSYNQVDQLT-GIMILAQLGHALAVVGNAKINDQEKLIYWNPWDTELSIQDAD................. 156
6 -14.7001y4h_A mol:protein length:188 cysteine protease  ali model follow..  8  26QFDNSWCAGFSMAALLNATKDTYNAHDIMRTLDLPNCATFPNQMIEYGKSQGRDIHYQEPSYNQVDQLT-GIMILAQLGHALAVVGNAKINDQEKLIYWNPWDTELSIQDAD................. 161
7 -13.9003erv_A mol:protein length:236 putative C39-like peptidase  ali model follow..  13  50......CEVTSLAMMLQYAGITVDKMKLANEIKKVDFGVYHGPLFQLAKKYL-AVDLTGKSIEELYKSVQPVVIITNNEHCVVLIGYDQES--VYIRDPLKDSLDVKVPREKFEQAWVSQAISYVKRSK 228
8 -13.3001cv8_A mol:protein length:174 STAPHOPAIN  ali model follow..  8  18QGNNGWCAGYTMSALLNATYNKYHAEAVMRFLQFQFTGLTPREMIYFGQTQGRSPQLLNTTYNEVDNLT-GIAILGSAGHAMAVVGNANNGQEVIIIWNPWDNGFMTQDAKNNVIPVSN.......... 161
9 -13.1004g54_A mol:protein length:258 General Secretion Pathway Protein  ali model follow..  11  26.........QGLEELYKLWGYRATRI---------------DTMCEQPSTSIFQCQVRQLNWQELQQTPHPLLLTLQHEGYVVLLEVDPERVVLLT-----GEQRLTFTVSQLMSLWRGEVTDL..... 123
10 -12.6001x9y_A mol:protein length:367 cysteine proteinase  ali model follow..  8  203QFDNSWCAGFSMAALLNATKDTYNAHDIMRTLDLPNCATFPNQMIEYGKSQGRDIHYQEPSYNQVDQLT-GIMILAQLGHALAVVGNAKINDQEKLIYWNPWDTELSIQDADSSLLHL........... 344
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.