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Query: 3b7h_A mol:protein length:78 Prophage Lp1 protein 11, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKTDGEFVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLGISVHDFFDFPPYNEVEKLast
1 -44.7003b7h_A mol:protein length:78 Prophage Lp1 protein 11  ali model  100  1MKTDGEFVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLGISVHDFFDFPPYNEVEK 78
2 -36.2003qq6_A mol:protein length:78 HTH-type transcriptional regulator sinR  ali model follow..  19  2....SSMIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETE... 72
3 -32.1002b5a_A mol:protein length:77 C.BclI  ali model follow..  22  6..EIKRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGD-RNISLINIHKICAALDIPASTFFRKMEEEN... 77
4 -31.9004ia8_A mol:protein length:82 Regulatory protein  ali model follow..  14  6.SFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTAISGIERNS-RNLTIKSLELIMKGLEVSDVVFFEMLIKEILKH 81
5 -31.9004i6u_A mol:protein length:82 Regulatory protein  ali model follow..  14  6.SFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTFISGIERNS-RNLTIKSLELIMKGLEVSDVVFFEMLIKEILKH 81
6 -31.7004fn3_A mol:protein length:82 Regulatory protein  ali model follow..  14  6.SFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNS-RNLTIKALELIMKGLEVSDVVFFEMLIKEILKH 81
7 -31.7004f8d_A mol:protein length:82 Regulatory protein  ali model follow..  14  6.SFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNS-ANLTIKSLELIMKGLEVSDVVFFEMLIKEILKH 81
8 -31.7001y7y_A mol:protein length:74 C.AhdI  ali model follow..  27  8.YADLVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQ-RNVSLVNILKLATALDIEPRELF.......... 73
9 -31.7004i6t_A mol:protein length:82 Regulatory protein  ali model follow..  14  6.SFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRAYISGIERNS-RNLTIKSLELIMKGLEVSDVVFFEMLIKEILKH 81
10 -31.0001b0n_A mol:protein length:111 PROTEIN (SINR PROTEIN)  ali model follow..  19  1......MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDG 72
11 -30.8003g5g_A mol:protein length:99 Regulatory protein  ali model follow..  14  17.SFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNS-RNLTIKSLELIMKGLEVSDVVFFEMLIKEILKH 92
12 -30.4003fya_A mol:protein length:99 Regulatory protein  ali model follow..  14  17.SFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDATYISGIERNS-RNLTIKSLELIMKGLEVSDVVFFEMLIKEILKH 92
13 -30.3002ofy_A mol:protein length:86 Putative XRE-family transcriptional regulator  ali model follow..  24  11.LERGQRLGELLRSAR--GDMSMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVAAVVTFGPVST 85
14 -29.5003vk0_A mol:protein length:114 Transcriptional regulator  ali model follow..  15  16.QDLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKR-WNIALSNIEKMAAALGVAAYQLLLPPQERL... 88
15 -28.6002ewt_A mol:protein length:71 putative DNA-binding protein  ali model follow..  16  3.SEYAKQLGAKLRAIRTQQGLSLHGVEEKSQWKAVVVGSYERGD-RAVTVQRLAELADFYGVPVQELL.......... 70
16 -27.9001zz6_A mol:protein length:198 Hydroxypropylphosphonic Acid Epoxidase  ali model follow..  22  5.KTASTGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGALTPPAGNDLDDG 81
17 -27.8003f51_A mol:protein length:117 Clp gene regulator (ClgR)  ali model follow..  19  23.PLLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGR-KEVSSELLASVCHALGASVADVLIEAAGSM... 95
18 -27.7004z5h_A mol:protein length:72 Antitoxin HipB  ali model follow..  18  6..YSPTQLANAMKLVRQQNGWTQAELAKKIGIKQATISNFENNP-DNTTLTTFFKILQSLELSMTLCD.......... 70
19 -27.5005woq_A mol:protein length:120 Transcriptional regulator ClgR  ali model follow..  15  5.ALLREVIGDVLRNARTDQGRTLREVSDAARVSLGYLSEVERGR-KEASSELLSAICDALDVPLSRVLTDAGESMARR 80
20 -27.2003rzz_A mol:protein length:446 Hydroxyethylphoshphonate Dioxygenase (PhpD)  ali model follow..  14  5.....RIDPFKLAHWMNARKYTAAQTADLAGLPLDDLRRLLGDEANEPDPAAATALAEALSVEPSQLAADAHRNL... 74
21 -26.3002xiu_A mol:protein length:66 CYLR2  ali model follow..  16  1......MIINNLKLIREKKKISQSELAALLEVSRQTINGIEKNK-YNPSLQLALKIAYYLNCPLEDIFQWQP...... 65
22 -26.3001utx_A mol:protein length:66 CYLR2  ali model follow..  16  1......MIINNLKLIREKKKISQSELAALLEVSRQTINGIEKNK-YNPSLQLALKIAYYLNTPLEDIFQWQP...... 65
23 -26.3001y9q_A mol:protein length:192 transcriptional regulator, HTH_3 family  ali model follow..  25  6.VMFKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGES-SPTIATLWKIASGLEASFSAFFANDP...... 75
24 -25.9003kxa_A mol:protein length:141 Putative uncharacterized protein  ali model follow..  22  57.KIALKAGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSK-QSLQDKTVQKLANALGVSPLEVRA......... 123
25 -25.8002wiu_B mol:protein length:88 HTH-TYPE TRANSCRIPTIONAL REGULATOR HIPB  ali model follow..  18  11.....TQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNP-DNTTLTTFFKILQSLELSMTLCDAKNASPESTE 82
26 -25.5003f6w_A mol:protein length:83 XRE-family like protein  ali model follow..  16  9.NARYQALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAE-RRLDVIEFMDFCRGIGTDPYALLS......... 75
27 -25.5003ivp_A mol:protein length:126 Putative transposon-related DNA-binding protein  ali model follow..  15  11.....RALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKG-QHPSLQVLYDLVSLLNVSVDEFFLPASSQVKST 82
28 -25.3006b9s_A mol:protein length:457 Methylphosphonate synthase  ali model follow..  10  10.DSYLIRSGNNFLGILNDIKRRPEDAANELGVSIEEINSIISGKQ-KISPSLIEKAVNIWPVNERDFYIVSDDCS... 82
29 -25.3005y69_A mol:protein length:151 chain A  ali model follow..  21  2.....SMTIKLLDEFLKKHDLTRYQLSKLTGISQNTLKDQNEKPLNKYTVSILRSLSMISGLSVSDVLFELEDIEKNS 74
30 -25.1004pu3_D mol:protein length:118 Toxin-antitoxin system antidote transcriptional repressor Xre family  ali model follow..  20  42.....QSLGLLIKERRKSAALTQDVAAMLCGVTKKTLIRVEKGE--DVYISTVFKILDGLGIDIVSAQTSDTETN... 109
31 -25.0003bs3_A mol:protein length:76 Putative DNA-binding protein  ali model follow..  14  4MSNNQQMMLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQ-PSLDMLVKVAELLNVDPRQLINGK....... 73
32 -24.9005k98_B mol:protein length:91 Antitoxin HipB  ali model follow..  18  14.....TQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNP-DNTTLTTFFKILQSLELSMTLCDTKNASPESTE 85
33 -24.6002k9q_A mol:protein length:77 uncharacterized protein  ali model follow..  18  3.......LSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSET-APVVVKYIAFLRSKGVDLNALFDRIIVNKLE. 71
34 -24.5001per_L mol:protein length:69 PROTEIN (434 REPRESSOR)  ali model follow..  17  2.......ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKT--KRPRFLPELASALGVSVDWLLNGTSDSNVR. 69
35 -24.4005uk3_A mol:protein length:176 Uncharacterized protein  ali model follow..  20  17....RQIMSNQFIKAKESKGLTYQQMAQLLSVNKVWLTSVLHGQNC-CDIQLAHRICDTLGISHEYANELTS...... 83
36 -24.3006b9r_A mol:protein length:450 Hydroxyethylphosphonate dioxygenase  ali model follow..  17  231LALTPGDHGAMLRSVMAARLTTVTELADRSGLKTDRVAALCRTPA-RAEWPELSALAEALGVSVRELLVPHTTTEAD. 306
37 -24.2003omt_A mol:protein length:73 uncharacterized protein  ali model follow..  13  6....ERKIFNRLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVQ-PSLETLFDIAEALNVDVRELIVSTK...... 72
38 -23.9002ef8_A mol:protein length:84 Putative transcription factor  ali model follow..  14  5.DHRYRCLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFE-RRLDALELFELLEVVASRLGLPMD......... 71
39 -23.5001zug_A mol:protein length:71 PHAGE 434 CRO PROTEIN  ali model follow..  17  2.....QTLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVT--KRPRFLFEIAMALNCDPVWLQY......... 63
40 -23.4002r63_A mol:protein length:63 REPRESSOR PROTEIN FROM BACTERIOPHAGE 434  ali model follow..  18  2.......ISSRVKSKMIQLGLNQAELAQKVGTTQQSIEQLENGKT--KRPRFLPELASALGVSVDWLL.......... 60
41 -23.3001sq8_A mol:protein length:64 dh434  ali model follow..  16  3.......MGERIRARRIQLGLNQAELAQKVGVDQQAIEQLENGKA--KRPRFLPELARALGVAVDWLLN......... 62
42 -22.7001rio_A mol:protein length:98 Repressor protein CI  ali model follow..  22  14..EDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINA-LNAYNAALLAKILKVSVEEFSP......... 79
43 -22.7003lfp_A mol:protein length:98 Csp231I C protein  ali model follow..  15  1......MLIRRLKDARLRAGISQEKLGVLAGIDEASMNQYEKGK-HAPDFEMANRLAKVLKIPVSYLYTPED...... 69
44 -22.5001adr_A mol:protein length:76 P22 C2 REPRESSOR  ali model follow..  7  4.....QLMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETE-PNGENLLALSKALQCSPDYLLKGDLSQT... 72
45 -22.3003kz3_A mol:protein length:80 Repressor protein CI  ali model follow..  22  8..EDARRLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINA-LNAYNAALLAKILKVSVEEFSP......... 73
46 -22.3005a7l_A mol:protein length:80 CI  ali model follow..  22  1...MQTDTSNRLKQIMAERNLKQVDILNLSKLSKSTLSQYVNSVQS-PDQNRIYLLAKTLGVSEAWLMGFD....... 76
47 -22.2005u55_A mol:protein length:190 (S)-2-hydroxypropylphosphonic acid epoxidase  ali model follow..  8  2..........DVRTLA-VGKAHLEALLATRKMTLEHLQDVRHDATQVDGLEHLQNVAQYLAIPLSEFFVGQTQSDLDD 70
48 -22.2003tyr_A mol:protein length:88 Transcriptional regulator  ali model follow..  16  21.........NKLWKLLIDRDMKKGELREAVGVSKSTFAKLGKNE--NVSLTVLLAICEYLNCDFGDIIEALP...... 81
49 -22.2004y42_A mol:protein length:156 Cyanate hydratase  ali model follow..  18  11....RETLTDTIMMAKIRKNLTFEAINQGTGLSLAFVTAALLGQHP-LPEQAARVVAEKLDLDEDAIRLLQTIPL... 80
50 -21.9001x57_A mol:protein length:91 Endothelial differentiation-related factor 1  ali model follow..  14  8.DRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAI-PNNQVLGKIERAIGLKLRGKDIGKPIEKGPR 83
51 -21.8003mlf_A mol:protein length:111 transcriptional regulator  ali model follow..  19  18.......AMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDS-TNIKDSLLSKYMSAFNVKYDDIFLGNEYEN... 84
52 -21.7002kpj_A mol:protein length:94 SOS-response transcriptional repressor, LexA  ali model follow..  19  4.DKQKAIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGI-AIPRMGKVQALADYFNINKSDLIEDKKLNI... 76
53 -21.7002l49_A mol:protein length:99 C protein  ali model follow..  17  1...MSNTISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGR-STPPTDVMMNILQTPQFTKYTLW.......... 64
54 -21.7004o8b_A mol:protein length:122 Uncharacterized protein  ali model follow..  12  1......MLGTRLKAARIRAGYSQKQLGMLVGMDSARMNQYERER-HSPNMRTSEQLAMVLQVPMAYLYCPED...... 69
55 -21.7005j2y_A mol:protein length:80 Regulatory protein  ali model follow..  12  12.......MAFRAKATRTARRESQETFWSRFGISQSCGSRFENGENLPFPIYLLLHFYIEGQITDRQLAD......... 73
56 -21.6003eus_A mol:protein length:86 DNA-binding protein  ali model follow..  14  9.TPEHVYLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRE-RRLDVIEFAKWMAACEGL............... 69
57 -21.6001lli_A mol:protein length:92 PROTEIN (LAMBDA REPRESSOR)  ali model follow..  19  13..EDARRLKAIYEKKKNELGLSQESLADKLGMGQSGIGALFNGINA-LNAYNAALLAKILKVSVEEFSP......... 78
58 -21.5003zhm_A mol:protein length:79 CI  ali model follow..  20  1....KTDTSNRLKQIMAERNLKQVDILNLSKLSKSTLSQYVNSVQS-PDQNRIYLLAKTLGVSEAWLMGRS....... 75
59 -21.4002mez_A mol:protein length:106 Multiprotein Bridging Factor (MBP-like)  ali model follow..  18  6..EIVTDYYKIIKTAREQLGISQQQLAQKLKVSENIVKRFESGKLK-PTISQARQLEKILGIKLVTPLENNEESEKE. 79
60 -21.3003zhi_A mol:protein length:83 CI  ali model follow..  22  3....KTDTSNRLKQIMAERNLKQVDILNLSKLSKSTLSAYVASVQS-PDQNRIYLLAKTLGVSEAWLMGRS....... 77
61 -21.2002p5t_A mol:protein length:158 Putative transcriptional regulator PezA  ali model follow..  14  1......MIGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGT-SSVSTELIDIICQKFNVSYVDIVGEDKMLNPVE 71
62 -20.9002a6c_A mol:protein length:83 Helix-turn-helix motif  ali model follow..  19  8..KMRSQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGLKVE............. 70
63 -20.7003op9_A mol:protein length:114 Pli0006 protein  ali model follow..  17  6...IQHQFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGE-TKPDIEKLIRLATYFHLSIDELVGYVQEDKVWN 79
64 -20.5005jub_A mol:protein length:310 Transcriptional regulator  ali model follow..  13  2..NLKDSIGLRIKTERERQQMSREVLCLGAELTVRQLIRIEKGES-LPSLDRLSYIAKRLGKSMTELLDQDNITIPDE 77
65 -20.4001dw9_A mol:protein length:156 CYANATE LYASE  ali model follow..  15  11....RLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQA-LPADAARLVGAKLDLDEDSILL......... 74
66 -20.3002qfc_A mol:protein length:293 PlcR protein  ali model follow..  18  4.....EKLGSEIKKIRVLRGLTQKQLSE--NIHQSEVSRIESGAV-YPSMDILQGIAAKLQIPIIHFYEVLIYSDIER 74
67 -20.1004ghj_A mol:protein length:101 Probable transcriptional regulator  ali model follow..  20  25.AALAEEIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAEKGKV-QLDIMIAILMALDLTEQIDLFIPKQE...... 94
68 -19.5005fd4_A mol:protein length:324 ComR  ali model follow..  13  22....DKEFGQRVRQLRESASMTREQFCDELELSVRQLTRIEAGAS-KPTFSKIQYIATRLGMGLYELMPDYVSLPER. 94
69 -19.3002o38_A mol:protein length:120 Hypothetical protein  ali model follow..  17  36..QTKLRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNALDQDVE............. 98
70 -19.1002jvl_A mol:protein length:107 TrMBF1  ali model follow..  17  28PKTVGKEVGKAIEQGRQEPTMTQAELGKEIGETAATVASYERGTA--PDQNILSKMERVLNVKLRGANIGAPRLGPKK 106
71 -18.3004yv6_A mol:protein length:284 Transcriptional regulator  ali model follow..  15  1...MDKELGKTLRRLRQGKQVSISSLADEH-LSKSQISRFERGES-EISCSRLLNLLDKLNITIDEFVSTHSKTHTHF 73
72 -17.6005v5t_A mol:protein length:306 Conserved domain protein  ali model follow..  14  8.....RPLGEEIERIRKGKNIPLRVFDE-NGVSSRSYQRFVQGNS-ELRISDLAIIVEILSISPMEMT.......... 68
73 -17.6002aw6_A mol:protein length:317 PrgX  ali model follow..  10  4.......IGSVLKQIRQELNYHQIDLYSGI-MSKSVYIKVEADSR-PISVEELSKFSERLGVNFFEILNRAGMNTKSV 72
74 -17.1004ryk_A mol:protein length:306 Lmo0325 protein  ali model follow..  15  2.....GSYGELIREIRLSKGLTQKEVYTGI-ISRSYAIGFEKGKH-EITLSLFEEILKRIMVPLDEFFFIYRDFSSTE 72
75 -17.0003r1f_A mol:protein length:135 ESX-1 secretion-associated regulator EspR  ali model follow..  15  2.NAMSTTFAARLNRLFDRGPHTSAEVIAAITMSAPYLSQLRSGNRTNPSGATMAALANFFRIKAAYFTDDEYYEKLDK 89
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.