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Query: 3brn_A mol:protein length:157 Lipocalin, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst AASSAQCDFGGPFQAYKSVNGPGNGGYYLRKTTKPGTPECAYVLVPQNTLSEGQSTSFTYGKLQNGQMIQLTATVTVNGDKIEVTGAGQDLSGTTTVLFSDYRSCDVMRGPDGNYELWVHSSAINLQSYGCCDTKFAQVAGGRPIHHTWQTYCPPLPLast
1 -73.8003brn_A mol:protein length:157 Lipocalin  ali model  100  1AASSAQCDFGGPFQAYKSVNGPGNGGYYLRKTTKPGTPECAYVLVPQNTLSEGQSTSFTYGKLQNGQMIQLTATVTVNGDKIEVTGAGQDLSGTTTVLFSDYRSCDVMRGPDGNYELWVHSSAINLQSYGCCDTKFAQVAGGRPIHHTWQTYCPPLP 157
2 -55.1002x45_A mol:protein length:144 ALLERGEN ARG R 1  ali model follow..  36  2......DDCSGKTDAWTSIKGPKTGGYWLKQTTKTGENECTYVKGTDFKENTKTATYTYGYKDASGKLTKTTGTATAKGSDIVVG------SDTSTVIYTDGKTCDVVKHGG-HTELWVHSSKTSGGYNNCCDKKFTETRGSTP-ANEVYKKCPGMP 144
3 -54.2003bs2_A mol:protein length:148 Lipocalin  ali model follow..  35  2......QQQCDTVSAWQSLRGPGTGGYYLFKTTEGGKTDCTYVKGSNFNDAAQTATYTYGNLGSGNQLTQQTASASISGN------AIVVGTDHSEVLYSDGSTCDVVRLNG-QIELWIHSSATSNNLNSCCTDKFNQEKGSRPEHVVYRSTCPNLP 147
4 -53.8003bu9_A mol:protein length:148 Lipocalin  ali model follow..  34  2......QQQCDTVSAWQSLRGPGTGGYYLFKTTEGGKTDCTYVKGSNFNDAAQTATYTYGNMGSGNQMTQQTASASISGN------AIVVGTDHSEVMYSDGSTCDVVRLNG-QIELWIHSSATSNNLNSCCTDKFNQEKGSRPEHVVYRSTCPNMP 147
5 -53.6005hcc_C mol:protein length:165 Complement inhibitor  ali model follow..  19  5GDSESDCTGSEPVDAFQAFSE-GKEAYVLVRSTDPKARDCLKGEPAGEKQDNTLPVMMTFKQGTDWASTDWTFTLD---GAKVTATLGQLTQNREVVYDSQSHHCHVDKVEKEVYEMWMLDAGGLEVEVECCRQKLEELASGRNQMYPHLKDC.... 155
6 -52.7003zui_A mol:protein length:150 COMPLEMENT INHIBITOR  ali model follow..  18  2..SESDCTGSEPVDAFQAFSE-GKEAYVLVRSTDPKARDCLKGEPAGEKQDNTLPVMMTFKNGTDWASTDWTFTLD---GAKVTATLGNLTQNREVVYDSQSHHCHVDKVEKEDYEMWMLDAGGLEVEVECCRQKLEELASGRNQMYPHLKDC.... 150
7 -48.7001qft_A mol:protein length:175 PROTEIN (FEMALE-SPECIFIC HISTAMINE BINDING PROTEIN 2)  ali model follow..  19  6...ADEAANGAHQDAWKSLKADVENVYYMVKATYKNDFTCVGVMANDVNEDEKSIQAEFLFMNNADTKVTAVKMYGYNRENAFRYETEDGQVFTDVIAYSD-DNCDVIYVPEEGYELWTTDY---DNIPANCLNKFNEYAVGRETRDVFTSACLEIA 173
8 -46.4003gaq_A mol:protein length:172 Female-specific histamine-binding protein 2  ali model follow..  19  7...ADEAANGAHQDAWKSLKARVENVYYMVKATYKNDFTCVGVMANDVNEDEKSIQAEFLFMNNADTKVTAVKMYGYNRENAFRYETEDGQVFTDVIAYSD-DNCDVIYVPEEGYELWTTDY---DNIPANCLNKFNEYAVGRETRDVFTSACLE.. 172
9 -31.9004boe_A mol:protein length:160 JAPANIN  ali model follow..  9  1.............TPSMPAIN--TQTLYLAGHSSKRNVGCVKTRYLNQTGDWVTRSLIYVFTFDTEPWVTQAGAFQVKWEPSDYVRDNLGAKPDYFIRTYD-NDFLLLSDLKEVCSLWVTLKYVDR-IPETINRTFYTICPD-PVPVPFDERCYP.. 152
10 -11.9001euo_A mol:protein length:180 NITROPHORIN 2  ali model follow..  12  14.............DKAKYFS----GKWYVTHFDPQVTDQYCSSFTPRESDGTVKEALYHYNANKKTSFYNIGEGKLESSGLQYTAKYKTVDSYTLTVLEADDSICLREGSKDLGDLYTVLTHQKDAEPSAKVKSAVTQA-QLSQFVGTKDLGCQYDD 175
11 -11.9001pm1_X mol:protein length:180 Nitrophorin 2  ali model follow..  12  14.............DKAKYFS----GKWYVTHFDPQVTDQYCSSFTPRESDGTVKEALYHYNANKKTSFYNIGEGKLESSGLQYTAKYKTVDSYTLTVLEADDSICVREGSKDLGDVYTVLTHQKDAEPSAKVKSAVTQA-QLSQFVGTKDLGCQYDD 175
12 -11.9005h9k_A mol:protein length:156 Lipocalin AI-4  ali model follow..  11  22.............DANRFFTGD----YLTHSRDSEVPVRCEKYQTGSNLQLNFNGKNGDVKCSGSTVSGN-----QGFYSFQCTTTSGGSFTSYMAVVETDYANCGLYGSTTPKDNFLLFNRQSSGEIPAGLSTKLNQL----ELTSLNKLGCS... 156
13 -11.6002xkl_A mol:protein length:171 APOLIPOPROTEIN M  ali model follow..  7  13LGMDDTETPEPHLGLWYFIAGAASTTEEL---ATFDPVDNIVFNMAAGSAPRQLQLRATIRTKSGVCVPRKWTYRLTEGKGNMELRTEGRPDMKTDLFSSSCPGGIMLKETGQGFLLYNRSPHPPEKC----VEEFQSLTSAFLVTPRNQEACPL.. 168
14 -11.6002rd7_C mol:protein length:184 Complement component C8 gamma chain  ali model follow..  8  20..PKANFDAQQFAGTWLLVAVGSACRFLQ-----EQGHRAEATTLHVAPQGTAMAVSTFRKLDGICWQVRQLYGDTGVLGRFLLQARDARGAVHVVVAETDYQSFAVLYLERAGVKLYARSLPVSDSVLSGFEQRVQELTEDQIFYFPKYGFCEAAD 174
15 -11.5001iw2_A mol:protein length:182 Complement Protein C8gamma  ali model follow..  9  18..PKANFDAQQFAGTWLLVAVGSAGRFLQ-----EQGHRAEATTLHVAPQGTAMAVSTFRKLDGICWQVRQLYGDTGVLGRFLLQARGARGAVHVVVAETDYQSFAVLYLERAGVKLYARSLPVSDSVLSGFEQRVQELTEDQIFYFPKYGFCEAAD 172
16 -11.4002ova_A mol:protein length:182 Complement component 8, gamma polypeptide  ali model follow..  9  18..PKANFDAQQFAGTWLLVAVGSAARFLQ-----EQGHRAEATTLHVAPQGTAMAVSTFRKLDGICWQVRQLWGDTGVLGRFLLQARGARGAVHVVVAETDYQSFAVLYLERAGVKLYARSLPVSDSVLSGFEQRVQELTEDQIFYFPKYGFCEAAD 172
17 -11.4004xmh_A mol:protein length:185 Nitrophorin-7  ali model follow..  15  16.............DKAKFFSGTWYETHYLDMDPQATEKFCFSFAPRESGGTVKEALYHFNVDSKVSFYNTGTGPLESNGAKYTAKPADEKYSYTVTVIEAAKQICLQEDGKDIGDLYSVLNRNKNALPNKKIKKALNKV-VLTKFVVTKDLDCKYDD 177
18 -11.1003cqn_A mol:protein length:185 Violaxanthin de-epoxidase, chloroplast  ali model follow..  10  10....DPSVLVQNFNISDFN-----GKWYITSGLNPDAFDCQLHEFHTEGDNKLVGNISWRIKTLDSGFFTRSAVQKFVQDPNILSSKIENKPEDYIFVYY----RGRNDAWDGYGGAVVRSSVLPNSIIPELEKAAKSIGRDFSTFIRTDNTCGPEP 177
19 -11.1001s2p_A mol:protein length:181 Crustacyanin C2 subunit  ali model follow..  8  14SVDRNKLWAEQTPNRNSYAGV----QFALTNNPYQLIEKCVRNEYSFDGKQFVIKSTGIAYDGNLLKRNGKLYPNPFGEPHLSID--ENSFAAPLVILETDYSNCIDYNFGYHSDFSFIRSANLADQYVKKCEAAFKNVDTTRFVKTVQGSSCPYDT 177
20 -10.8001d2b_A mol:protein length:126 TISSUE INHIBITOR OF METALLOPROTEINASES-1  ali model follow..  6  2......................................TCVPPHPQTAFCNSDLVIRAKFVGTPEVNQTTLYQRYEIKMTKMYKGFQALGDAADIRFVYTMESVCGYFHRSHNRSEEFLIAGKLQDGL-TTCSAPWNSLSLAQRFTKTYTVGCEE.. 126
21 -10.8001i4u_A mol:protein length:181 CRUSTACYANIN  ali model follow..  10  14SVDRNKLWAEQTPNRNSYAGV----QFALTNNPYQLIEKCVRNEY-SFDGKQFVIESTGIAYDGNLLKRNGKLYPNPFGEPHLSIDYENSFAAPLVILETDYSNCIDYNFGYHSDFSFIRSANLADQYVKKCEAAFKNVDTTRFVKTVQGSSCPYDT 177
22 -10.7004ge1_A mol:protein length:197 Biogenic amine-binding protein  ali model follow..  10  15.............NKDNFFT----GSWYITHYLEVGDKNCTKFLHQKTADGKIKEVFSNYNPNAKTYSYDISFAKVSDFDGNNGKRKIDERTLQVSYIDTDYSKCDPAAPDYYLYAVQSRTENVKEDVKSKVEAALGKVGLKLSGLFDATTKCQYDD 181
23 -10.6003ma2_B mol:protein length:125 Metalloproteinase inhibitor 1  ali model follow..  8  2......................................TCAPVHPQTAFCNSDLVIRAKFVGTPEVNQTTLYQRYEIKMTKMYKGFQALGDAADIRFVYTMESVCGYFHRSHNRSEEFLIAGKLQDGL-TLCSAPWNSLSLAQRRTKTYTVGCE... 125
24 -10.6004es7_A mol:protein length:201 Protein AMBP  ali model follow..  5  33..VQENFNISRIYGKWYNLAIGSTCPWLK---KIMDRMTVSTLVLGEGATEAEISMTSTRWRKGVCEETSGAYEKTDTDGKFLYHKSKWNITMESYVVHTNYDEYAIFLTKKFSAKLYGRAPQLRETLLQDFRVVAQGIPEDSIFTMADRGECVP.. 192
25 -10.6004os8_A mol:protein length:190 Prostaglandin-H2 D-isomerase  ali model follow..  7  30..VQPNFQQDKFLGRWFSAGLASNSSFLR---EKKAALSMAKSVV-APATDGGLNLTSTFLRKNQCETRTMLLQPAGSLGSYSYRSPHFGSTYSVSVVETDYDQYALLYSDFRMATLYSRTQTPRAELKEKFTAFCKAFTEDTIVFLPQTDKCMT.. 188
26 -10.6003cki_B mol:protein length:121 Metalloproteinase inhibitor 3  ali model follow..  7  2......................................TCSPSHPQDAFCNSDIVIRAKVVGKKLVKEGPFGTLVYTIKQMKMYRGFTKMPHVQYIHTEASESLCGLKLEVNKYQYLLTGRVYDGKMYTGLCNERWDQLTLSQRKNYRYHLGCN... 121
27 -10.3004alo_A mol:protein length:181 H1 APOCRUSTACYANIN  ali model follow..  10  14SVTRNKLWAEQTPNRNMYAGV----QFALTNNPYQLIEKCVRNEY-SFDGEQFVITSTGIAYDGNLLKRNGKLYPNPFGEPHLSIDYEMSFAAPLVILETDYSNCIDYNFGYHSDFSFIRSANLADKYVKKCEAAFKNVDTTRFVKTVQGSSCPYDT 177
28 -10.3004hfo_A mol:protein length:195 Biogenic amine-binding protein  ali model follow..  10  13.............NKDNFFTGSMTHYKLGDSTLEVGDKNCTKFLHQKTADGKIKEVFSNYNPNAKTYSYDISFAKVSDFDGNNGKRKIDERTLQVSYIDTDYSKCDPAAPDYYMYAVQSRTENVKEDVKSKVEAALGKVGLKLSGLFDATTKCQYDD 179
29 -10.3004orr_A mol:protein length:190 Prostaglandin-H2 D-isomerase  ali model follow..  7  30..VQPNFQQDKFLGRWFSAGLASNSSWLR---EKKAALSMAKSVV-APATDGGLNLTSTFLRKNQCETRTMLLQPAGSLGSYSYRSPHWGSTYSVSVVETDYDQYALLYSDFRMATLYSRTQTPRAELKEKFTAFCKAFTEDTIVFLPQTDKCMT.. 188
30 -10.0002wew_A mol:protein length:172 APOLIPOPROTEIN M  ali model follow..  7  16LGVDGKEFPEVHLGQWYFIAGAAPTKEEL---ATFDPVDNIVFNMAAGSAPMQLHLRATIRMKDGLCVPRKWIYHLTEGSTDLRTE--GRPDMKTELFSSSCPGGIMLNETGQGFLLYNRSPHPPEKC----VEEFKSLTSAFLLTPRNQEACEL.. 169
31 -10.0001u17_A mol:protein length:185 Nitrophorin 1  ali model follow..  10  14.............NKDKYFNG---DVWYVTDYLDLEPDDCAALA-AGTASGKLKEALYCYDPKTQDTFYDVSELQEESPGKYTANFKKVEKNYYTFTVMYADDSCLHKGNKDLGDLYAVLNRNKDTNAGDKVKGAVTAA-KFSDFISTKDNKCEYDN 176
32 -9.9802e4j_A mol:protein length:167 Prostaglandin-H2 D-isomerase  ali model follow..  6  8..VQPNFQQDKFLGRWYSAGLASNSSWFREKKAVLY----MCKTVVAPSTEGGLNLTSTFLRKNQAETKIMVLQPAGAPGHYTYSSPHSGSIHSVSVVEANYDEYALLFSDFRMATLYSRTQTLKDELKEKFTTFSKALTEEDIVFLPQPDKAIQ.. 166
33 -9.7402czt_A mol:protein length:167 Prostaglandin-H2 D-isomerase  ali model follow..  7  8..VQPNFQQDKFLGRWYSAGLASNSSWFR---EKKAVLYMAKTVV-APSTEGGLNLTSTFLRKNQCETKIMVLQPAGAPGHYTYSSPHSGSIHSVSVVEANYDEYALLFSRGT-ATLYSRTQTLKDELKEKFTTFSKALTEEDIVFLPQPDKCIQ.. 166
34 -9.7002at3_X mol:protein length:184 Nitrophorin 4  ali model follow..  8  3...TKNAIAQTGFNKDKYFNGDVWYVTDYLDLEPDDVPKRYCAALAAGTASGKLKEALYHYDPKTQDTFYDVSELQVESLGKYTANFK-YADDSSALIH----TCVHKGNKDLGDVYAVLNRNKDAAAGDKVKSAVSAA-EFSKFISTKENNCAYDN 175
35 -9.6602wwp_A mol:protein length:176 PROSTAGLANDIN-H2 D-ISOMERASE  ali model follow..  7  9..VQPNFQQDKFLGRWFSAGLASNSSWLR---EKKAALSMCKSVV-APATDGGLNLTSTFLRKNQCETRTMLLQPAGSLGSYSYRSPHWGSTYSVSVVETDYDQYALLYSDFRMATLYSRTQTPRAELKEKFTAFCKAFTEDTIVFLPQTDKCMT.. 167
36 -9.5801d2u_A mol:protein length:184 NITROPHORIN 4  ali model follow..  8  1.ACTKNAIAQTGFNKDKYFNGDVWYVTDYLDLEPDDVPKRYCAALAAGTASGKLKEALYHYDPKTQDTFYDVSELQVESLGKYTANFK-YADDSSALIHT----CLHKGNKDLGDLYAVLNRNKDAAAGDKVKSAVSAA---SKFISTKENNCAYDN 175
37 -9.5704gnw_A mol:protein length:184 Nitrophorin-4  ali model follow..  11  3...TKNAIAQTGFNKDKYFNGDVWYVTDYLNLQPDNVPKRYCAALAAGTASGKLKEALYHYDPKTQDTFYDVSELQVESLGKYTANVTAGNYYTFTVMYADDSTCLHKGNKDLGDLYAVLNRNKDAAAGDKVKSAVSAA-EFSKFISTKENNCAYDN 175
38 -9.3204nyq_A mol:protein length:164 Milk protein  ali model follow..  8  21.............TPRALVGK----LRTTSPDIFKQVSNITEFYSAHGNDYYGTVTDYSPEYGLEAHRVNLT---VSGRTLKFYMNDTHEYDSKYEILAVDKDYFIFYAAPSGLALIHYRQSCPKEDVIKRVKKALKNV-DYKYFGNDTSVPCH... 161
39 -9.2801avg_I mol:protein length:142 TRIABIN  ali model follow..  6  16.............KPEEFFNGT----YLAHGPGVTSPAVCQKFTTSGSKGFTQIVEIGYNKFESNVKFQCNQVDNKNGEQYSFKCKSSDNTEADFTFISVSYDNSITFTSQPKEDRYLVFERTKSDTDPD........................... 137
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.