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Query: 3bru_A mol:protein length:222 Regulatory protein, TetR family, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SNAMPLTDTPPSVPQKPRRGRPRGAPDASLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYHYFRNKADFGLALIEAYDTYFARLLDQAFLDGSLAPLARLRLFTRMAEEGMARHGFRRGCLVGNLGQEMGALPDDFRAALIGVLETWQRRTAQLFREAQACGELSADHDPDALAEAFWIGWEGAILRAKLELRPDPLHSFTRTFGRHFVTRTQELast
1 -97.3003bru_A mol:protein length:222 Regulatory protein, TetR family  ali model  100  1SNAMPLTDTPPSVPQKPRRGRPRGAPDASLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYHYFRNKADFGLALIEAYDTYFARLLDQAFLDGSLAPLARLRLFTRMAEEGMARHGFRRGCLVGNLGQEMGALPDDFRAALIGVLETWQRRTAQLFREAQACGELSADHDPDALAEAFWIGWEGAILRAKLELRPDPLHSFTRTFGRHFVTRTQE 222
2 -83.6004yze_A mol:protein length:201 HTH-type transcriptional repressor NemR  ali model follow..  25  2.....................SMNKHTEHDTREHLLATGEQLSLQRGFTGMGLSELLKTAEVPKGSFYHYFRSKEAFGVAMLERHYAAYHQRLTELLQSGEGNYRDRILAYYQQTLNQFSQHGTISGCLTVKLSAEVSDLSEDMRSAMDKGARGVIALLSQALENGRENHSLTFSGEPLQQAQVLYALWLGANLQAKISRSFEPLENALAHVKNIIATPA.. 200
3 -80.2003rd3_A mol:protein length:197 Probable transcriptional regulator  ali model follow..  30  3......................HMKTSYDDTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYHYFKSKEQFGQALLEDYFRVYLADMDQRFSAPGLNARERLMSYWQKWLDNACPPCDEQRCLVVKLSAEVADLSESMRITLRDGSDGIIERLVGCLGQGRDDGSLA-PCDARHMASALYQLWLGASLLSKLHRSPGPLETAMQTTRSLLE..... 196
4 -79.8003eup_A mol:protein length:204 Transcriptional regulator, TetR family  ali model follow..  16  4......................KELSKSDRTRQFIIESTAPVFNVKGLAGTSLTDLTEATNLTKGSIYGNFENKEAVAIAAFDYNWGHVKSVLTAKV-QACNTYKEMLLVYSSMYNDADGSLFPVGGCPLLNTTIEADDTHDALRKKAGEAILSWKKNLVTIIKKGIQAKEFRPDTDVTKIAFSMIALVEGAILIHRATKNRAYSDYVFESLEDLIAGIEVK 202
5 -78.5003qbm_A mol:protein length:199 TetR transcriptional regulator  ali model follow..  17  2........................MRKGQETRERVVAQAAALFNVSGYAGTAISDIMAATGLEKGGIYRHFESKEQLALAAFDYAAEKVRERFAVGL-AGHKHTVDTIIAFLDVFRSYAERPPLVGGCPILNTAIESDDTNPMLRERVRAVIDEWRETIRTLVQTGIARGEIRPEVDADRLALLIIATMEGAVMLARILETATPLEHAYTHLATYITQQVR. 197
6 -78.3003knw_A mol:protein length:212 Putative transcriptional regulator (TetR/AcrR family)  ali model follow..  24  1................SNAMTTHQVKKSEAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTTETSARDKLMNYLQCWVKDPATEQSWAESCLIVKMAAEVADLSEDMRLIMNDGVKRLIARMADLIRIGQQEGSIQTSVVPDVLAQVIYQMYLGAALLSKLYKHKAPLFQALESTKMMLDGCNHV 206
7 -75.0002hyj_A mol:protein length:200 Putative tetR-family transcriptional regulator  ali model follow..  16  1..................MSPRRSAAEAQATRGRILGRAAEIASEEGLDGITIGRLAEELEMSKSGVHKHFGTKETLQISTLDKAFVDFWHRVVEPALAEP-PGLRRLRAVCANSVGYLEEPLLPGGCLLTAALSEYDGRPGRVRDAVAEVWSRWREQLRADLTAAVDKGELPAGFDVEQALFEIVAAGLALNAAMQLQHDRTAADRARRAIERALAQ.... 199
8 -71.9002g7s_A mol:protein length:194 transcriptional regulator, TetR family  ali model follow..  18  2.......................SMKNPQSKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQYRQEAEAGIAE-LEKNISDPLEQLRAYIGYWEGCIAD-ATHPFCVCALLASEIPVLPETVVLEVRAHFRSLSDWLTAVLERGIAQGRLVLTGTARANAEIFMATVHGAMLSARAHGDAATFGAITRPMLERITA.... 194
9 -71.1003on4_A mol:protein length:191 Transcriptional regulator, TetR family  ali model follow..  17  6.........................MNISNTKERILAVAEALIQKDGYNAFSFKDIATAINIKTASIHYHFPSKEDLGVAVISWHTDKIAAVLSDISNNSSLSAKEKIQKFFDAILTLTYNSENK-MCLGGMFASDFQSLPVSIQNQAKKFFELIIEWLKGVLETNGYDNE-----SSLSLAKQIISLVEGGLLLARLYGDETFLEGVRHFIDQTIK..... 191
10 -69.0001sgm_A mol:protein length:191 Putative HTH-type transcriptional regulator yxaF  ali model follow..  20  1........................MTSRGDSREKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHFFPNKEELAIEAVTYTGKIVEHLIQQSM-DESSDPVEAIQLFIKKTASQFDNTESIKGIPVGLLASETALISEPLRTVCMKVFKSWEAVFARKLMENGFAEE-----EANQLGTLINSMIEGGIMLSLTNKDKTPLLLIAEQIPVLVRK.... 189
11 -67.0003dpj_A mol:protein length:194 Transcription regulator, TetR family  ali model follow..  20  1......................SNAMVQAQTRDQIVAAADELFYRQGFAQTSFVDISAAVGISRGNFYYHFKTKDEILAEVIRLRLARTAQMLADWQ-GTGDSPRARIASFIDLMIMNRAKITR-YGCPVGSLCTELSKLDHAAQGQANGLFTLFRDWLQRQFAEAGCTT------EAPALAMHLLARSQGAATLAQSFHDEGFLRSEVADMHRWLDNTLPM 192
12 -58.2002i10_A mol:protein length:202 Putative TetR transcriptional regulator  ali model follow..  20  2...............HMPGGRRRGFD-----DQVALQTAMELFWRQGYEGTSITDLTKALGINPPSLYAAFGSKRDLFEKTLDRYMCERTLQLEEAMVRP--TAHEAVLDFLTGRVEVFTAPGQPFGCMTVQAGLASGEPHHEIVDLLTAAREQMRQTVLDRFEKALADGDLPAGTDCTALARYVMAAVYGLSVEAASGAPREELTAAAILAAQVVPRAQMG 201
13 -57.6002fd5_A mol:protein length:180 transcriptional regulator  ali model follow..  18  2........................SDKKTQTRARILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQSKDALMLEAFEQLLGKRRELLGELDPGLSGKERRALAAAF-YLSRKHRDAQVDAGCPLPATLAEVARLPEGFREVLSRHVEIMVTSLAESP-------------EETDVALADLVLMIGGLALARALGPGELSDRVLRAAKQAVN..... 180
14 -57.0001ui5_A mol:protein length:215 A-factor receptor homolog  ali model follow..  18  2......................ARQLRAEQTRATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGALYFHFAAKEDLAHAILEIQSRTSRRLAKD-LDGRGYSSLEALMRLTFGMARLCV------QGPVLRAGLRLATAGVPVRPPLPHPFTEWREIATSRLLDAVRQSDVHQDIDVDSVAHTLVCSVVGTRVVGGTLEPAGREPRRLAEMWYIL...... 188
15 -53.6004uds_A mol:protein length:214 MBDR REGULATOR  ali model follow..  17  4....................LNKKEEQRKASTENILGCALDLFVKNGYRATTIDMIAARAGLTKGAIYFYFKTKDAIMLMLLEEAEKYIVDPIDEYMANAGPLADAKLVKFINMQALLGVTKPQH---LLILVSIDFSGTGDDIEKRAKAIYRRMYGHVEQLIAQGQTEGVFRSDSGSDELASIVMAAHDGVLIEWYRRPNELTGKTLTKALRSVL...... 198
16 -53.3002uxh_A mol:protein length:210 HTH-TYPE TRANSCRIPTIONAL REGULATOR TTGR  ali model follow..  18  1..................MVR-RTKEEAQETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFNNKAELVQALLDSLHETHDHLARASESEDEVDPLGCMRKLLLQVFNELVLDRTRRINEILHHKCEFTDDMCEIRQQRQSAVLDCHKGITLALANAVRRGQLPGELDAERAAVAMFAYVDGLIRRWLLLPDSVDLLGDVEKWVDTG...... 198
17 -53.2005xay_A mol:protein length:228 Gamma-butyrolactone receptor protein  ali model follow..  19  1......................ARQERAAQTRRTIVAAAAAVFDELGYEATTIAEILKRSGVTKGALYFHFTSKEQLAQEVLTSQLRAVPPVEEQR---------LVLQQIIDETLLLAQLLSKGDPLVRGSVRLTVEPGAPRDGLDRRAPMQEWIGHGRDLLRRAEAGGELLPRLDVDAVARMLVGGFTGAQILSNILTGHADLLERVTDMHRHLMT.... 187
18 -52.9002w53_A mol:protein length:219 REPRESSOR  ali model follow..  17  1..................MAR-KTKEDTQATREGILDAAEACFHEHGVARTTLEMIGARAGYTRGAVYWHFKNKSEVLAAIVERVHLPFMQELERTSTDQRDTPVHDLRAVMIHSFIELSEDERLRKTMEIMLRSDASANTRVLTEMQQAGFRDALDRMERALRRARDLGQLREGADPKIAARMLHATVLGVLHGAMVEPELMDLKRDGMLALDMT...... 197
19 -52.3003vib_A mol:protein length:210 MtrR  ali model follow..  18  3......................KTKTEALKTKEHLMLAALETFYRKGIARTSLNEIAQAAGVTRDALYWHFKNKEDLFDALFQRICDDIENCIAQDAADAEGGSWTVFRHTLLHFFERLQSNDIHYKHNILFLKCEHTEQNAAVIAIARKHQAIWREKITAVLTEAVENQDLADDLDKETAVIFIKSTLDGLIWRWFSSGESFDLGKTAPRIIGIM...... 197
20 -51.7002qop_A mol:protein length:215 HTH-type transcriptional regulator acrR  ali model follow..  19  1..................MAR-KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRR--EIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKEARDYVAIL...... 198
21 -51.0003lhq_A mol:protein length:220 AcrAB operon repressor (TetR/AcrR family)  ali model follow..  17  1...............SNAMAR-KTKQQALETRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYWHFKNKSDLFSEIWELSESNIGELEIEYQAKFPDDPLSVLREILVHILEATVTEERRR--EIIFHKCEFVGEMVVVQQAQRSLCLESYDRIEQTLKHCINAKMLPENLLTRRAAILMRSFISGLMENWLFAPQSFDLKKEARAYVTIL...... 201
22 -50.3002wui_A mol:protein length:210 TRANSCRIPTIONAL REGULATOR  ali model follow..  17  1..................MAR-KTKEESQKTRDGILDAAERVFLEKGVGTTAMADLADAAGVSRGAVYGHYKNKIEVCLAMCDRAFGQIEVPDENARVPALDILLRAGMGFLRQCCE---PGSVQRVLEILYLKCERSDENEPLLRRRELLEKQGQRFGLRQIRRAVERGELPARLDVELASIYLQSLWDGICGTLAWTERLNRAERMFRAGLDSLRSSPY. 204
23 -49.6003g7r_A mol:protein length:221 Putative transcriptional regulator  ali model follow..  19  4....SSSGRENLYFQGMSPSTEAAARTPSEARARLLGTATRIFYAEGIHSVGIDRITAEAQVTRATLYRHFSGKDDLILAYLDQADRGIRAQVTAARGSSP-AADGQVRAVARSIVDGIRSPGFR-GCAFLNAVAEYPDPAHPVHRAVLAHRQWFLDTVTELLAQVGDG-------DGVAAGRHLVMLRDGAMAAGCLFDPELVSETFLHGVEGVLRDVSEK 212
24 -49.6004ac6_A mol:protein length:191 HTH-TYPE TRANSCRIPTIONAL REPRESSOR ACNR  ali model follow..  16  1................GHMVSVAAGDKPTNSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHHFGDKENLFLALAREDAARMAEVVSE----------NGLVEVMRGMLEDPERYDW---MSVRLEISKQLRTDPVFRAKWIDHQSVLDEAVRVRLSRNVDKGQMRTDVPIEVLHTFLETVLDGFISRLATGASTEGLSEVLDLVEGTVRKR... 190
25 -49.5005daj_A mol:protein length:212 NalD  ali model follow..  17  2.....................RRTKEDSEKTRTAILLAAEELFLEKGVSHTSLEQIARAAGVTRGAVYWHFQNKAHLFNEMLNQVRLPPEQLTERLSGCDGSDPLRSLYDLCLEAVQSLLTQEKKRRILILMQRCEFTEELREAQERNNAFVQMFIELCEQLFARDECRVRLHPGMTPRIASRALHALILGLFNDWLRDPRLFDPDTDAEHLLEPM...... 197
26 -48.7005l0x_A mol:protein length:223 Hemagglutinin/protease regulatory protein  ali model follow..  14  2GSSSSGLVPRGSHMDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGDHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFLTDHI-DLDLDVKTNLQTLCKEMVKLAMTDC-----WLKVWFEWSASTRDEVWPLFVSTNRTNQLLIRNMFMKAMERGELCEKHDVDNMASLFHGIFYSIFLQVNRLGEQEAVYKLVDSYLNMLCIYK.. 216
27 -48.5001rkt_A mol:protein length:205 protein yfiR  ali model follow..  13  1..................MSPKVTKEHKDKRQAEILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVYLYFSSTEEMFRRIIETGLDEGLRKLDKSAEHQ--SVWASISSYLDELTEGLRDVADTLAPVQFEYLVT-AWRNEERRQYLEKRYDLFVERFSRLLQKGIDQGEFQPVQPLATIAKFFLNMNDGIIQNALYFDEVSGLAESAKLYLKTVLQADEK 205
28 -48.3003kz9_A mol:protein length:206 SmcR  ali model follow..  17  1.............AMDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLSDNI-DLDLHAKENIANITNAMIELVVQDN-----WLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHNPEDLANLFHGICYSLFVQANRTNNTAELSKLVSSYLDML...... 198
29 -47.9006ayh_A mol:protein length:201 TetR family transcriptional regulator  ali model follow..  18  1.................SNAMENKLTEPLPTRMRILRAARQCFAENGFHSTSMKTICKASDMSPGTLYHHFPSKEALIEAIILEDQERALTHF-----REPLEGVGLVDYLVESTIAVTREDYAQRA-LVVEIMAE-GMRNPQVAEMLTNKYHTIIASLVARFNDAQAKGEIGADVDKEMAARLLLATTYGVLSDSSSAENARH-VSFATTLRTMLTGLLK. 196
30 -47.8003jsj_A mol:protein length:190 Putative TetR-family transcriptional regulator  ali model follow..  18  3.......................TTEVKQSPRERLLEAAAALTYRDGV-GIGVEALCKAAGVSKRSMYQLFESKDELLAASLKERSAAFVAKALPPA-DDGRSPRERILYVFERVESQAGAPDFQ-GCRYLAVQIELKDQAHPASRVAYQIKADLMAFFRSEAERGGAS-------DPDLLARQLILVFDGASARAGIGADNLTGLIV-PTLTTLLDAADMH 190
31 -45.9005gpa_A mol:protein length:195 Transcriptional regulator (TetR/AcrR family)  ali model follow..  17  3.........................KKKGPKYDQIIDAAVQVIAEHGYHQAQVSKIAKAAGVADGTIYLYFNNKEDVLISLFQEKMGRFVDKIRSQM-NEATDVEEKLKILVNMHFKQLAADH-----LAIVTQLELRQSNTELALKINEVLKGYLNLLDELLMEGKEKGYFFQELDTRLARQMIFGTLDEVVTNWVMKDCKYDLTALVKPVHQLL...... 188
32 -45.9001vi0_A mol:protein length:206 transcriptional regulator  ali model follow..  17  2.......................SLKQKRPKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFIERMEEDI-KEKATAKEKLALVISKHFSLLAGDH-----LAIVTQLELRQSNLELRQKINEILKGYLNILDGILTEGIQSGEIKEGLDVRLARQMIFGTIDETVTTWVMNDQKYDLVALSNSVLELL...... 189
33 -45.9002g3b_A mol:protein length:208 putative TetR-family transcriptional regulator  ali model follow..  17  2............................SERRDAILKASATAIAQRGIRGLRVNDVAEVAGVSPGLLYYHFKDRIGLLEAALNYINDRARAYRSEGEGSGD-SARDRLTRSLLGEIQ--DRPEVVENSLAWNELRASAVYEEALRDPLARTTAAWVSEIADAIVQAQATGEISRSLDPQPTAVTMTALVEG--LSGRWLCKEISTEDARSHLLGAIDVVMSE 190
34 -45.6006ayi_A mol:protein length:199 HTH-type transcriptional regulator UidR  ali model follow..  18  1................SNAMMDNMQTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYHHFISKEALIQAIILQDQERALARF-----REPIEGIHFVDYMVESIVSLTHEAFGQRA-LVVEIMAE-GMRNPQVAAMLKNKHMTITEFVAQRMRDAQQKGEISPDINTAMTSRLLLDLTYGVLADIEAEDREASFAQGLRAMIGGILTAS.. 199
35 -45.3003br0_B mol:protein length:194 HTH-type transcriptional regulator qacR  ali model follow..  11  2.............................NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKSEQIKAK-TNREKFYLYNELSLTTEYYYPLQN---AIIEFYTEYYKTNSINEKMNKLQNKYIDAYHVIFKEGNLNGEWSIN-DVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIFLNGLSK. 188
36 -45.2003crj_A mol:protein length:199 Transcription regulator  ali model follow..  15  1...............SNAMAGPSD-RTFSDQTEEIMQATYRALREHGYADLTIQRIADEYGKSTAAVHYYYDTKDDLLAAFLDYLLERFVDSIHDV---ETTDPEARLNLLLDELLVKPQENPDLSVALLEMRSQ--APYKEAFSDRFRQNDEYVRYMLKAVINHGIDEGVFT-DVDAEHVTRSLLTIIDGARTRAVMLDDTEELETARQTASEYADAM... 197
37 -45.1005eyr_A mol:protein length:228 EthR  ali model follow..  18  1...MDIEFTTSAASQASPRGRRTARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENADTDRENMWRTGINVFFETFGSHK------VTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSPEARVLDTLVHIW...... 211
38 -45.0003ang_C mol:protein length:204 Transcriptional repressor, TetR family  ali model follow..  18  2......................VREYQKKRRRERIFRAAMELFRNRGFQETTATEIAKAAHVSRGTFFNYYPYKEAVLLDYGSQLLAGLREEVRRLL-AQGREPVEVLRHLFRVLAEGTAREK------LLLPMFYELLNPDPVRARAAFEALPLGDLIAEILKPLREQGVLRQDFSLERMGRTLADLYFLSALRWAAYTPGRDLAEELEKNLRLL...... 189
39 -44.9001jt0_A mol:protein length:194 HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN QACA 5`REGION  ali model follow..  11  2.............................NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQ-IKAKTNREKFYLYNELSLTTEYYYPLQN---AIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWSI-NDVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIFLNGLSK. 188
40 -44.7003br3_B mol:protein length:194 HTH-type transcriptional regulator qacR  ali model follow..  11  2.............................NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKSEQIKAK-TNREKFYLYNELSLTTQYYYPLQN---AIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWSIN-DVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIFLNGLSK. 188
41 -44.4002f07_A mol:protein length:197 YvdT  ali model follow..  15  3......................TMPKQTSGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLYFSSKNALIPAIAENLLTHTLDQIKGRL-HGDEDFWTVLDILIDETFLITERHKDIIVLCYSGLAID------HSMEKWETIYQPYYSWLEKIINKAIANHEVTEGINSKWTARTIINLVENTAERFYIGFEQDNVEVYKKEIFTFLKR.... 192
42 -44.3005icj_A mol:protein length:221 Probable transcriptional regulatory protein  ali model follow..  18  1..MGSSSSGLVPRGSHMEIKRRTQEERSAATREALITGARKLWGLRGYAEVGTPEIATEAGVTRGAMYHQFADKAALFRDVVEVVEQDVMARMATLVAAGAATPADAIRAAVDAWLEVSGDPE------VRQLILLDAPVVLGWAGFRDVAQRYSLGMTEQLITEAIRAGQLAR-QPVRPLAQVLIGALDEAAMFIATADDPKRARRETRQVLRRL...... 208
43 -43.6003lwj_A mol:protein length:202 Putative TetR-family transcriptional regulator  ali model follow..  13  2..................MPIPLE-KQNKERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYNYFVDKEDILKNLLEDFAKQIISSISEYY-LVEKDLYERFIETKRLTMEVFAQNE------LSEIYSRVAGSSAPIDQCLKQFEDRLLEFYSRNIEYGIKKGVFK-NVPVSPIAHSILAIEKFSLYKWVVLKTKEEMIEMVLSFHKTL...... 193
44 -43.6003g1l_A mol:protein length:256 TRANSCRIPTIONAL REGULATORY REPRESSOR PROTEIN (TETR-FAMILY) ETHR  ali model follow..  17  13....SHMTTSAASQASLPRGRRTARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENADTDRENMWRTGINVFFETFGSHK------VTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSPEARVLDTLVHIW...... 221
45 -43.5003nrg_A mol:protein length:217 TetR family transcriptional regulator  ali model follow..  20  1.................GMPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAYLRWLLDVGIQFQFHNP-----LAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTE............................... 170
46 -43.5005d18_A mol:protein length:216 TetR family transcriptional regulator  ali model follow..  15  2.................GVPAKKKQQQGERSRESILDATERLMATKGYAATSISDIRDACGLAPSSIYWHFGSKEGVLAAMMERGAQRFFAAIPT-WDEAHGPVEQRSERQLTELVSLQSQHP-----LFYLLSME-RSQDPAVAAVVRRVRNTAIARFRDSITHLLPSDIPPADLVVAELTAFAVALSDGVYFAGHLEPDTTDVERMYRRLRQALEA.... 201
47 -43.4002gfn_A mol:protein length:209 HTH-type transcriptional regulator pksA related protein  ali model follow..  19  2.....................PKIVDH-DERRRALADAVLALIAREGISAVTTRAVAEESGWSTGVLNHYFGSRHELLLAALRRAGDIQGDRYRTILDEEGAGPIEKLRNITASILPLDERRLAMTRVFLFFYAE--GAAEETARGEIAAFLARWRGVVRESVVAAQREGTVSTDLDADAVTVALVALTDGLALQAILDPVVMKAISAEDAAARCVDAAVRR 199
48 -43.3003geu_A mol:protein length:189 Intercellular adhesion protein R  ali model follow..  13  1...........................SNAMKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNNIIMMNQ-NKSNYSIDALYQFLFEFIFDIEER-------YIRMYVQLSNTPEEFSGNIYGQIQDLNQSLSKEIAKFYDESKIKM--TKEDFQNLILLFLESWYLKASFSQKFGAVEESKSQFKDEVYS.... 181
49 -43.2001zkg_A mol:protein length:212 transcriptional regulator, TetR family  ali model follow..  16  2......................GSDKIVLSKRDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYMSVTEKLQKEFENFLMKRNRDIFDFMERWIEKKLEYSASHP------EADFLITLVSVDEGLRKRILLDLEKSQRVFFDFVREKLKDLDLAEDVTEEIALKFLMWFFSGFEEVELLKRDMNTLVEEVKVMLRILKKGMTK 206
50 -43.0005wm9_A mol:protein length:214 Rv0078  ali model follow..  19  2.................EIKRRTQEERSAATREALITGARKLWGLRGYAEVGTPEIATEAGVTRGAMYHQFADKAALFRDVVEVVEQDVMARMATLVAAGAATPADAIRAAVDAWLEVSGDPE------VRQLILLDAPVVLGWAGFRDVAQRYSLGMTEQLITEAIRAGQLAR-QPVRPLAQVLIGALDEAAMFIATADDPKRARRETRQVLRRL...... 194
51 -43.0004gct_A mol:protein length:196 Nucleoid occlusion factor SlmA  ali model follow..  17  4.........................NKKINRREEILQALAEMLENEGASRITTAKLAKQVGVSEAALYRHFPSKTRMFEGLIEFIEESLMSRINRIF-DEEKDTLNRIRLVMQLLLAFAERNPGLTRILSGH---ALMFENERLRDRINQLFERIETSLRQILRERKLREGKSFPVDENILAAQLLGQVEGSLNRFVRSDFKYLPTANFDEYWALLSA.... 193
52 -42.9005haw_A mol:protein length:196 Nucleoid occlusion factor SlmA  ali model follow..  17  2.......................EKQAKINRREEILQALAEMLENEGASRITTAKLAKQVGVSEAALYRHFPSKTRMFEGLIEFIEESLMSRINRIF-DEEKDTLNRIRLVMQLLLAFAERNPGLTRILSGH---ALMFENERLRDRINQLFERIETSLRQILRERKLREGKSFPVDENILAAQLLGQVEGSLNRFVRSDFKYLPTANFDEYWALLSA.... 193
53 -42.8005hsz_A mol:protein length:196 Nucleoid occlusion factor SlmA  ali model follow..  15  1.....................EKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLIL-KDEKDTTARLRLIVLLILGFGERNPGLTRILTGH---ALMFEQDRLQGRINQLFERIEAQLRQVMREKKMREGEGYTLDETLLASQLLAFCEGMLSRFVRSEFKYRPTDDFDARWPLVAA.... 193
54 -42.8006azh_A mol:protein length:192 TetR family transcriptional regulator  ali model follow..  14  1........................SNAMNRTKKAIFEAAINVFATSGYNGSTVDEIASKANVAKGTLYYNFKSKEEIFNFVISKGLEIWHEKLTD-IENLEDEPIEKLKKLFKMQFELLYENR------FFKMVMSQLWGKETRQDELRNKITEYIEGIERILKEAISKKQIR-ECDISLLAHSLFGSLISTSLYELSRDKEFNVNKVIDEITINI...... 185
55 -42.8005vl9_A mol:protein length:192 Regulatory protein TetR  ali model follow..  14  5..........................NREERRETIMQAAMRVALDQGFTGMTVRNIATAAGVAAGQVHHHFTSSGELKSQAFIRVIREMMDLQR---LSRTAGWREQLFSALGSEDGRLEPY-----IRLWRQAQLLADSDPEIKSAYLLTMNLWHDEAVRIIRAGHAAGEFTLRDSAENIAWRLISLVCGLDGIYVLGMPEVDDAAFTRHLQHVIQLE... 189
56 -42.7004w1u_A mol:protein length:204 HTH-type transcriptional repressor KstR2  ali model follow..  14  2.................AMGMDRVAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLFARYRDIV-DSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQR----ASQPRFSYIEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYLAIVLGGITKE 202
57 -42.7004gck_A mol:protein length:212 Nucleoid occlusion factor SlmA  ali model follow..  13  1.....MPPGKCLFSGVFCNMAEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLIL-KDEKDTTARLRLIVLLILGFGERNPGLTRILTGH---ALMFEQDRLQGRINQLFERIEVQLRQVMREKKMREGEGYTLDETLLASQLLAFCEGMLSRFVRSEFKYRPTDDFEARWPLVAA.... 209
58 -42.5003nxc_A mol:protein length:212 HTH-type protein slmA  ali model follow..  13  1.....MPPGKCLFSGVFCNMAEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLIL-KDEKDTTARLRLIVLLLLGFGERNPGLTRILTGH---ALMFEQDRLQGRINQLFERIEAQLRQVLREKRMREGEGYATDETLLASQILAFCEGMLSRFVRSEFKYRPTDDFDARWPLIAA.... 209
59 -42.5005k58_E mol:protein length:190 Nucleoid occlusion factor SlmA  ali model follow..  14  1............................RNRREEILQSALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLIL-KDEKDTTARLRLIVLLLLGFGERNPGLTRILTGH---ALMFEQDRLQGRINQLFERIEAQLRQVMREKRMREGEGYTTDETLLASQILAFCEGMLSRFVRSEFKYRPTDDFDARWPLIAA.... 187
60 -42.3002zcm_A mol:protein length:192 Biofilm operon icaABCD HTH-type negative transcriptional regulator icaR  ali model follow..  14  2..............................MKDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVENCFNYFIDFMMRNH-DDNYSIDGLYQFLFKFIFDVDERY---------KLYVQLSSAPEALNSEIKHHLQEINTTLHDELIKYYDPTHIA--LDKEDFINMILMFLETWYFRASFSQKFGIIEDSKNRFKDQVYS.... 178
61 -42.3003vuq_A mol:protein length:187 Transcriptional regulator (TetR/AcrR family)  ali model follow..  21  4.....................TPPGAGVKDKKRAILEATLAVLRERGLSGLKMEEVARRAEVGKGTIYLYFRDKRDLLKALVEERTWAFYREVEEVV-RRKAPFFVRLEEVLRRRLAWVQEWR---------WAAVAREAMDDPTPWLKGLHEHYLRLLEELLRSGQSEGAVRTGLSPRATAAVIAAMGCTPSLEVE-----AYLEHLMEVLRKGVE..... 186
62 -42.2003s5r_A mol:protein length:216 Transcriptional regulator TetR family  ali model follow..  12  3......................QATMTDKNTRELLLDAATTLFAEQGIAATTMAEIAASVGVNPAMIHYYFKTRDSLLDTIIEERIGRIIDMIWEPVTGEEDDPLIMVRDLVNRIVNTCETML---------WIREIVNEGGALREKLNNIPIDKMNKFSAKIAEGQKQGVINSGIDSRLLIGSIIGLTMLPLATAKLRDKGLSSEDIVCHVTALL...... 198
63 -42.2004mo7_A mol:protein length:212 Transcriptional regulator I2  ali model follow..  13  1.GPLGSMDEHKALGVMRTMVDSGQLTDPESARGKLLQTAAHLFRNKGFERTTVRDLASAVGIQSGSIFHHFKSKDEILRAVMEETIHYNTAMMRASL-EEASTVRERVLALIRCELQSIMGGSGEA---MAVLVYEWRSLSAEGQAHVLALRDVYEQIWLQVLGEAKAAGYIRG--DVFITRRFLTGALSWTTTWFRAQGSLTLEELAEEALLMVLKS.... 211
64 -42.1002zcn_A mol:protein length:192 Biofilm operon icaABCD HTH-type negative transcriptional regulator icaR  ali model follow..  15  2..............................MKDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVENCFNYFIDFLLRNH-DDNYSIDGLYQFLFKFIFDVDERY---------KLYVQLSSAPEALNSEIKHHLQEINTTLHDELIKYYDPTHIAL--DKEDFINLILLFLETWYFRASFSQKFGIIEDSKNRFKDQVYS.... 178
65 -42.1003f0c_A mol:protein length:216 Transcriptional regulator  ali model follow..  13  3.....................DNKIKNEDGKLELIINAAQKRFAHYGLCKTTMNEIASDVGMGKASLYYYFPDKETLFEAVIKKEQNVFFDEMDKIL-NSGIDATALLKKYVKLRSLHFRHL------LSKLRSDFFHNTKPVFAKAFESFKQKEVEIVAGIIQYGITTKEFKR-GNKHENAEFLVHLLLGVRMVKLKYKEDKNMCKVAGMFLKEIQTEVAS 209
66 -42.0006el2_A mol:protein length:196 Transcriptional regulator TetR family  ali model follow..  15  2..................MYRAPKTEKGKESLNKILDASVELIADKGFLSTSINDITSKAGVAYGLFYFYFKSKHDILDEIIRQFNRNMRYYLKTYT-QNLDSRIDVEKVGMKKFLEWMNENK--------KYYKIFIETQVHRPDIYKWHFMKLAERYTTGLSEAMRRGEII-NVDPELLSYVLIGIAHMLGKRYVLWSNSGLTLKQQRDLDLIIENMLTP 195
67 -41.7002ibd_A mol:protein length:204 Possible transcriptional regulator  ali model follow..  11  2.................TPPPADDTSGKSGRRTELLDIAATLFAERGLRATTVRDIADAAGILSGSLYHHFDSKESMVDEILRGFLDDLFGKYREIV-ASGLDSRATLEALVTTSYEAIDASHSAVAIYQDEVKH----VANERFTYLSELNTEFRELWMGVLEAGVKDGSFRSDIDVELAFRFLRDTAWVAVRWYRPGGSVTVDTVAKQYLSIVLDGLASP 202
68 -41.5004mxm_A mol:protein length:203 Transcriptional regulator I2  ali model follow..  13  1..........GPLGSMRTMVDSGQLTDPESARGKLLQTAAHLFRNKGFERTTVRDLASAVGIQSGSIFHHFKSKDEILRAVMEETIHYNTAMMRASL-EEASTVRERVLALIRCELQSIMGGSGEA---MAVLVYEWRSLSAEGQAHVLALRDVYEQIWLQVLGEAKAAGYIRG--DVFITRRFLTGALSWTTTWFRAQGSLTLEELAEEALLMVLKS.... 202
69 -41.2002hyt_A mol:protein length:197 TetR-family transcriptional regulator  ali model follow..  16  5......................RTRAEMEETRATLLATARKVFSERGYADTSMDDLTAQASLTRGALYHHFGDKKGLLAAVVEQIDAEMDERLQAIS-DTAEDDWEGFRCRCRAYLEMALEPEIQR----------LRDARAVLGGASPDSQRHCVESMQRLIDNLIRQGVVA-EADPQALASLIYGSLAEAAFWIAEGEDGNARLAQGVAALELL...... 188
70 -41.1003b81_A mol:protein length:203 Transcriptional regulator, AcrR family  ali model follow..  13  1...................GMSRTNINFNNKRTELANKIWDIFIANGYENTTLAFIINKLGISKGALYHYFSSKEECADAAIENRVAFFSNEVLK-ESEEGLNSIERLKKILLAGIKITSVNEQV-------KEINSPSNKIFHQKLMVAIIKYFAPIYADIISQGNEEGVFKVK-YPLETAEIILTLSHFYLDEDLFKWKKEDMSLKLTAFKETLIK.... 190
71 -41.1004ich_A mol:protein length:311 Transcriptional regulator  ali model follow..  12  89....DARTVAAVPAPTARSRSAPAGEPQSEARRRILETAWRLIARRGYHNVRIHDIASELGTSNATIHYHFPSKKDILLEALRRNVKLAFDRQVAEL-HTIADARERLVRLVELQLPTPGLLRDEWSVWLQVWTE--STLNPKIRDLYNDAYDRWYQTIAMTIRTGQKQGVFR-DQDADELATRLSALIDGLGIQVLTGKRGCSVDHMRQHLNDFIEH.... 298
72 -41.0002iai_A mol:protein length:230 Putative transcriptional regulator SCO3833  ali model follow..  15  1...MGSSSSGRENLYFQGMTTAK---RDTYTPETLLSVAVQVFIERGYDGTSMEHLSKAAGISKSSIYHHVTGKEELLRRAVSRALDELFGILDEEH-ARVGTAAERLEYVVRRMVEVLMAELPYVTLLLRVRGN-------GTERWALERRREFDHRVAALLKDAAAEGDVRADVEVRLATRLVFGMIEGPDGRSDASGASGVSGAGEREVVDAVARL... 215
73 -40.9004me9_A mol:protein length:189 Transcriptional regulator, TetR family  ali model follow..  14  3...........................AKNKQEDIFDAAMQLFAERGYDGTTIPMIAEKAKVGAGTIYRYFENKEALVNSLFSKSMLQLSEMIKTDF-PVEANIREQFSHTYNRLFEFARNNVDA-------LFTNSHCDSYFLDEQSKKIFDDFIGFFMNIIEDGIVKGLLR-PLPPVALIIIVYQPLEKLIATGQLEYSKELVKELEESSWNAIR..... 187
74 -40.9003he0_A mol:protein length:196 Transcriptional regulator, TetR family  ali model follow..  12  1...................SNAMTDNPAVDKRDQILAAAEQLIAESGFQGLSMQKLANEAGVAAGTIYRYFSDKEHLLEEVRLNVAKRIASAVQAGV-NDDMPLKERYRTMWLNIWNLAGSNL------AISNRVQYDSLPCTTRNKTWELERKMFAQVDRLFNQGKEEGVFK-PLDNEVLSGLSFEASVALAALGFYQLDDDALEAAIEASWDAIIK.... 195
75 -40.8003dew_A mol:protein length:206 Transcriptional regulator, TetR family  ali model follow..  15  1......................SNAMTRADCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYHFGGKEGLYAAVLQEQFACFGQLDD--IRGQAGDPLAVMTAYLRWTIQRHRNNP---------YTSELTNPTPCFAAIVSPAIASVIRLLAESIEAGMTRGLFRRDLHAVNSALALAGMVNEGLTSHSPDQDEELIRQYVAIFTRGIMADGGA 203
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.