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Query: 3cb2_A mol:protein length:475 tubulin gamma-1 chain, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYHAATRPDYISWGTQEQVDVDGGQKLISEEDLLLELast
1 -129.0003cb2_A mol:protein length:475 tubulin gamma-1 chain  ali model  100  1MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYHAATRPDYISWGTQEQVDVDGGQKLISEEDLLLE 469
2 -113.0005flz_C mol:protein length:473 TUBULIN GAMMA CHAIN  ali model follow..  36  1MGGEIITLQAGQCGNHVGKFLWSQLAKEHAIGTDGLSQLPDSSTDDDTKPFFRENCRNKFTPRAIMMDSEPSVIADVENTFRGFFDPRNTWVASD-GASAGNSWANGYDIGTRNQDDILNKIDKEIDSTDNFEGFQLLHSVAGGTGSGLGSNLLEALCDRYPKKILTTYSVFPAR--SSEVVVQSYNTILALRRLIEDSDATVVFDNASLLNISGKVFRNPNIDLQHTNQLISTIISSVTNSIRFPSYMYSSMSSIYSTLIPSPELHFLSPSFTPFTSDYIHDDIAHKCHS-SYDVMLDLLDPSNSLVSTAMNNPTYFNVYNTIIGNVEPRQISRAMTKL--QQRIKFPSWSSSAMHVNIGRRSPYQPNENEVSGMMLSNMSTVVNVFENACNTFDKVFAKGAFLNNYNVGDLFQSVQDEFAESREVVQSLMEDYVAAEQDSYLDDVLVDDENMVGELEEDLDAD.... 467
3 -112.0005mlv_I mol:protein length:448 Tubulin beta chain  ali model follow..  31  2..REIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQ-SGAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAP-KSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSF-QAVSVPELTQQMFDANNMMVAADP---RHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK---DLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTE---AESNMNDLVSEYQQYQEAGIDEGDEDYEIEEEKEPLE......... 447
4 -111.0005mlv_E mol:protein length:455 Tubulin alpha-1 chain  ali model follow..  29  2..REVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVLNDGFGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGK-EDASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAP-QVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFH-ESNSVQEITNQCFEPYNQMVKCDP---RTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSE---AREDLAALERDYEEVGQDSMDNEMYEADEE................ 454
5 -111.0003j8x_A mol:protein length:451 Tubulin alpha-1B chain  ali model follow..  30  2..RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGK-EDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAP-QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYH-EQLSVAEITNACFEPANQMVKCDP---RHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE---AREDMAALEKDYEEVGVDSVEGEGEEEGEE................ 450
6 -111.0001z2b_B mol:protein length:445 Tubulin beta chain  ali model follow..  31  2..REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ-SGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSP-KVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQY-RALTVPELTQQMFDSKNMMAACDP---RHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPR---GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTE---AESNMNDLVSEYQQYQDATADEQGEFEEEEGEDEA........... 445
7 -110.0003du7_A mol:protein length:449 Tubulin alpha-1C chain  ali model follow..  30  2..RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGK-EDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAP-QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQ-LSVAEITNACFEPANQMVKCDP---RHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE---AREDMAALEKDYEEVGADSYEDEDEGEE.................. 448
8 -110.0002xrp_B mol:protein length:452 TUBULIN ALPHA-1D CHAIN  ali model follow..  30  2..RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGK-EDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAP-QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYH-EQLSVAEITNACFEPANQMVKCDP---RHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE---AREDMAALEKDYEEVGVDSVEGEGEEEEGE................ 450
9 -110.0003ryc_B mol:protein length:445 Tubulin beta chain  ali model follow..  32  2..REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ-SGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSP-KVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQY-RALTVPELTQQMFDSKNMMAACDP---RHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR---GLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTE---AESNMNDLVSEYQQYQDATADEQGEFEEEEGEDEA........... 445
10 -110.0001z2b_A mol:protein length:448 Tubulin alpha chain  ali model follow..  30  2..RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGK-EDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAP-QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYH-EQLSVAEITNACFEPANQMVKCDP---RHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE---AREDMAALEKDYEEVGIDSYEDEDEGEE.................. 448
11 -110.0001ffx_B mol:protein length:445 PROTEIN (TUBULIN)  ali model follow..  31  2..REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ-SGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSP-KVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQY-RALTVPELTQQMFDAKNMMAACDP---RHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPR---GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTE---AESNMNDLVSEYQQYQDATADEQGEFEEEGEEDEA........... 445
12 -109.0005ubq_D mol:protein length:429 Tubulin beta chain  ali model follow..  33  2..REIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQ-TGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVREEYPDRIMETFSVVPSP-KVSDTVVEPYNATLSVHQLVENADECMVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQY-RALTVPELTQQMFDAKNMMCAADP---RHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSICDIPPK---GLKMAVTFVGNSTAIQEMFKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTE---AESNMNDLVSEYQQYQDAT........................... 429
13 -109.0005Z4P Entity 3(prereleased)  ali follow..  30  2..RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGK-EDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAP-QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYH-EQLSVAEITNACFEPANQMVKCDP---RHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE---AREDMAALEKDYEEVGVDS........................... 439
14 -109.0004ffb_A mol:protein length:447 Tubulin alpha-1 chain  ali model follow..  30  2..REVISINVGQAGCQIGNACWELYSLEHGIKPDGHLEDGLSKPEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISGK-EDAANNYARGHYTVGREILGDVLDRIRKLADQCDGLQGFLFTHSLGGGTGSGLGSLLLEELSAEYGKKSKLEFAVYPAP-QVSTSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDMCKRNLDIPRPSFANLNNLIAQVVSSVTASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYSPVLSKSKAFH-ESNSVSEITNACFEPGNQMVKCDP---RDGKYMATCLLYRGDVVTRDVQRAVEQVKNKKTVQLVDWCPTGFKIGICYEPPTQLATVDRAVCMLSNTTSIAEAWKRIDRKFDLMYAKRAFVHWYVGEGMEEGEFTE---AREDLAALERDYIEVGADSYAEEEE..................... 446
15 -109.0006e88_A mol:protein length:434 Tubulin alpha-2 chain  ali model follow..  30  2..REVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEGESFTTFFSDTGSGRYVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGK-EDAANNYARGHYTVGKELIDTVLDRIRRLADNCSGLQGFFVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAP-QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDVERPSYTNLNRIISQVVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLAAYTPLISAEKAYH-EALSVSDITNSCFEPANQMVKCDP---RHGKYMAVCLLYRGDVVPKDVNTAIAAIKTKRTIQFVDWCPTGFKVGINYQPPGDLAKVPRAVCMLSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTE---AREDLAALEKDYEEVG.............................. 434
16 -109.0005Z4P Entity 4(prereleased)  ali follow..  32  2..REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ-SGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSP-KVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQY-RALTVPELTQQMFDSKNMMAACDP---RHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPR---GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTE---AESNMNDLVSEYQQYQDATAD......................... 431
17 -109.0006e88_B mol:protein length:426 Tubulin beta-2 chain  ali model follow..  34  2..REIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGETDLQLERIDVYYNEANNGKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQ-SGAGNNWAKGHYTEGAELVDNVLDVIRKEAEGCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMSSFSVVPSP-KVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICYRTLKLTNPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLSAKGTQAY-RALTVAELTQQMFDAKNMMAACDP---RHGRYLTVAAMFRGRMSMREVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPR---GLKMAATFVGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTE---AESNMNDLISEYQQYQ.............................. 426
18 -109.0005n5n_B mol:protein length:426 Tubulin beta chain  ali model follow..  33  2..REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ-SGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSP-KVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQY-RALTVPELTQQVFDAKNMMAACDP---RHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPR---GLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTE---AESNMNDLVSEYQQYQ.............................. 426
19 -109.0004ffb_B mol:protein length:463 Tubulin beta chain  ali model follow..  33  2..REIIHISTGQCGNQIGAAFWETICGEHGLDFNGTYHGHDDIQKERLNVYFNEASSGKWVPRSINVDLEPGTIDAVRNSAIGNLFRPDNYIFGQ-SSAGNVWAKGHYTEGAELVDSVMDVIRREAEGCDSLQGFQITHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVLPSP-KRSDTRVEPYNATLSVHQLVEHSDETFCIDNEALYDICQRTLKLNQPSYGDLNNLVSSVMSGVTTSLRYPGQLNSDLRKLAVNLVPFPRLHFFMVGYAPLTAIGSQSF-RSLTVPELTQQMFDAKNMMAAADP---RNGRYLTVAAFFRGKVSVKEVEDEMHKVQSKNSDYFVEWIPNNVQTAVCSVAPQ---GLDMAATFIANSTSIQELFKRVGDQFSAMFKRKAFLHWYTSEGMDELEFSE---AESNMNDLVSEYQQYQEATVEDDEEDENGDFGAPQNQDEPITENFE 457
20 -109.0005ubq_C mol:protein length:441 Tubulin alpha chain  ali model follow..  30  2..REVISIHVGQGGIQVGNACWELFCLEHGIQPDGQMPSDKTIGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGK-EDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSP-QVSTAVVEPYNSILSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYH-EQLSVAEITNSAFEPANMMAKCDP---RHGKYMACSMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPGGDLAKVMRAVCMISNSTAIAEVFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE---AREDLAALEKDYEEVGIET........................... 439
21 -108.0005ij0_B mol:protein length:426 Tubulin beta-3 chain  ali model follow..  33  2..REIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYVPRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQ-SGAGNNWAKGHYTEGAELVDSVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSP-KVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQY-RALTVPELTQQMFDAKNMMAACDP---RHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPR---GLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTE---AESNMNDLVSEYQQYQ.............................. 426
22 -108.0005w3j_B mol:protein length:457 Tubulin beta chain  ali model follow..  33  2..REIIHISTGQCGNQIGAKFWEVICDEHGLDFNGTYHGHDDIQKERLNVYFNEASSGKWVPRSINVDLEPGTIDAVRNSAIGNLFRPDNYIFGQ-SSAGNVWAKGHYTEGAELVDSVMDVIRREAEGCDSLQGFQITHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVLPSP-KTSDTVVEPYNATLSVHQLVEHSDETFCIDNEALYDICQRTLKLNQPSYGDLNHLVSSVMSGVTTSLRYPGQLNSDLRKLAVNLVPFPRLHFFMVGFAPLTAIGSQSF-RSLTVPELTQQMFDAKNMMAAADP---RNGRYLTVAAFFRGKVSVKEVEDEMHKVQSKNSDYFVEWIPNNVQTAVCSVAPQ---GLDMAATFIANSTSIQELFKRVGDQFSAMFKRKAFLHWYTSEGMDELEFSE---AESNMNDLVSEYQQYQEATVEDDEEDENGDFGAPQNQDEPITENFE 457
23 -106.0002btq_B mol:protein length:426 TUBULIN BTUBB  ali model follow..  33  2..REILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSNAANSNMEVFFHKVRDGKYVPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKI-PGAANNWARGYNVEGEKVIDQIMNVIDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSP-LISDSAVEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKL-NRSPNYMDLNNIIALIVSSVTASLRFPGKLNTDLSEFVTNLVPFPGNHFLTASFAPMRGAGQEGQ-VRTNFPDLARETFAQDNFTAAIDW---QQGVYLAASALFRGDVKAKDVDENMATIRKSLNYASYMPASGGLKLGYAETAPE---GFASSGLALVNHTGIAAVFERLIAQFDIMFDNHAYTHWYENAGVSRDMMAK---ARNQIATLAQSYRDAS.............................. 426
24 -104.0002bto_A mol:protein length:473 TUBULIN BTUBA  ali model follow..  26  4..NNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSKLGESSSGSYVPRAIMVDLEPSVIDNVKATSG-SLFNPANLISRT-EGAGGNFAVGYLGAGREVLPEVMSRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSP-QVSSVVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGITASMRFSGFLTVEISELLTNLVPQPSLHFLMCAFAPLTPPDRSKF-EELGIEEMIKSLFDNGSVFAACSP---MEGRFLSTAVLYRGIMEDKPLADAALAAM-REKLPLTYWIPTAFKIGYVEQPGI---SHRKSMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQINV---LRASAQELVQSYQVAEESGAKAKVQDSAGDTGMRAAAAGVSDD... 458
25 -102.0005nd4_A mol:protein length:412 Tubulin alpha chain  ali model follow..  31  1..RECISIHVGQAGVQIGNACWELYCLEHGIQPDG------------------------HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGK-EDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAP-QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYH-EQLSVAEITNACFEPANQMVKCDP---RHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE---AREDMAALEKDYEEVGVDS........................... 412
26 -26.7003zid_A mol:protein length:373 TUBULIN/FTSZ, GTPASE  ali model follow..  18  3...NVLMLGVGQCGNRILDAVNRQ------------------AFGGSRLAKYYSKQRFPSRVETIAINTAINDLKELKFTAA-----KDRLHVPNLHGVGAN------SKGKQGFWENQEMILEEIEKRGDFDLIFVMTSVSGGTGSSFSPLMIHELKKRYKNATIVPIAVLPF---REEGTIYLQNAAFCLREMIEEADGMILVDNQYLKRFSGDIAS----AYDRINTMVAQRLLFLIEALDSEMLSVTDLGDFKTVM................................................................................................................................................................................................................. 225
27 -21.8003v3t_A mol:protein length:360 Cell division GTPase FtsZ, diverged  ali model follow..  16  3MKNKIVFAPIGQGGGNIVDTLLGI----------------------------------CGDYNALFINTSKKDLDSLKH--------KHTYHIPYAEGCGKERKKAV-GYAQTYYKQIIAQIMEKFSSCDIV---IFVATMAGGAGSGITPPILGLAKQMYPNKHFGFVGVLPK---ATEDIDEHMNAIACWNDIMRSTNSIYLLDNN------------KREKESDINKEFATLFNDFMNMSESHAEGVVDEDEISKLL................................................................................................................................................................................................................. 207
28 -21.2004ei7_A mol:protein length:389 Plasmid replication protein RepX  ali model follow..  14  17...KFGFLGLGMGGCAIAAECANK----------------------------TQIKNNKYPYRAILVNTNSQDFNKIEIKNTGNV---KIQLEGYEQGAARNPQVG-EEAFVKHETKIFEAVKQEFEDRDFI---WITCGLGGGTGTGALLKAIEMLYEH--DYNFGLLLTLPRDAEALKVLENATSRIRSIAMNQEAFGSIVLIDNAKLYRKFEEENPSALANTSYSNKYIADALNLVTSSFTPFSDTHFDASEFAQVI-------VLSLAKLELKSNQLDTENPLGYLTQLGNAL--EKGVLYDTEREELESAKKSALSIVTSPLRAGRLYNFSFLNQMENFLKERTPYVDERPIAPYVNKHTTKKEEDIVKFYSVVAGLPLPKRVSDIIDEITRIKEER................................................................... 380
29 -20.4002xkb_A mol:protein length:427 FTSZ/TUBULIN-RELATED PROTEIN  ali model follow..  15  24...RWGVIGAGQKGNKEADLFAGY-----------------------------KFSNGTTCYPTLAVNFAESDMMHLQNII-----KEDRIHFDGLKGAARTPSVVT-PETNPNANGYLDKLAQELGR-VIVDQFLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPSGDPD-----EINNALVLLSEIDEPLANVIVNDNTQMQRIIESQKNRYVNWKEVANDNVVSTLHEIIPENYGSDNVTYDPSDLIKLL................................................................................................................................................................................................................. 274
30 -20.4004b46_A mol:protein length:395 CELL DIVISION PROTEIN FTSZ  ali model follow..  19  2...KLAMIGFGQAGGKVVDKFVE----------------------------YDRERNAGIVRAAVAVNSAKADLLGLKNIPKDQRVLIGQSRVKGHGVGAD-------ELGAEIAEEDIDEVQGAIDSVHEVDAFLVVSGLGGGTGSGGAPVLAKHLKRIYTEP-VYGLGILPGSDEGG---IYTLNAARSFQTFVREVDNLLVFDNDAWRKTGESV----QGGYDEINEEIVNRFAGEVQDGQEVAESVVDSSEIINTL................................................................................................................................................................................................................. 223
31 -20.0003m89_A mol:protein length:427 FtsZ/tubulin-related protein  ali model follow..  14  38...RWGVIGAGQKGNKEADLFAGY-----------------------------KFSNGTTCYPTLAVNFAESDMMHLQNII-----KEDRIHFDGLKGAARTPSVVT-PETNPNANGYLDKLAQELGR-VIVDQFLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPSGDPDEIN-FMREQDRLFGNSDIKPLANVIVNDNTQMQRIIESQKNRYVNWKEVANDNVVSTLHEIIPENYGSDNVTYDPSDLIKLL................................................................................................................................................................................................................. 288
32 -19.9004b45_A mol:protein length:349 CELL DIVISION PROTEIN FTSZ  ali model follow..  17  2...KTVLIGVGQAGGKLASALQSF----------------------------DRQTGFGAVLDAVAVNTAKADLQSL----------PVETVLIGQDRVNGHGVGGDNELGAAVMESDQTEVMSALDG-AEAESIFVVAGLGGGSGSGGAPVLAKALAGVY-DVPVYVLGILPG---ADEGALYQVNAGRSLKTVAREADAVLLVDNDAFRSAGESM----SEGYDAINEAIARRVGLLLAATEGVGESVVDTSEVINTL................................................................................................................................................................................................................. 217
33 -18.9003j4t_F mol:protein length:490 FtsZ/tubulin-related protein  ali model follow..  11  30...RWGVIGAGQKGNKEADLFAGY-----------------------------KFSNGTTCYPTLAVNFAESDMMHLQNII-----KEDRIHFDGLKGAARTPSVVT-PETNPNANGYLDKLAQELGR-VIVDQFLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPS--GDPDEINNALVLLSEIDEFMKPLANVIVNDNTQMQRIIESQKNRYVNWKEVANDNVVSTLHEIIPENYGSDNVTYDPSDLIKLL-----------SIPGRFLTIGKARIAKFDLHSLENSIKRSLDEGFFSAEHQFETATMYGGFVLRPSNADFFKDVNTENRIRNTLGEY------KRLDEIAGKFGDPIWDNEYAVCYTIFAGMTMPKRYISLAREGKELAEKQEQLRAEAQRKQDEEKVDISFATNRVQKNTFNPYNKNQGFGGASRFSGGKNSAFKRQTSEATSTQNQQ 472
34 -18.2003zbp_A mol:protein length:333 PHIKZ039  ali model follow..  13  6...KTRIYFCGGAGFRIGELFHGY--------------------------------------DVCYIDTSVQNKHKHNTDDNTIIIEADTKLADQTARKRAIGMGKDRKAAAELISAHIPAIAHHFPAGDTN---IVVYSMGGASGSTIGPSLVSHLQQQ-----EVVVSVVIGSYDSDISLRNSSGSLKTFEGVSSVSKIINYHENV------------EGIPQSMVNQNILEVLNALVILFN-QEHQSLDLMDITNWA................................................................................................................................................................................................................. 209
35 -14.6003j5v_a mol:protein length:320 PhuZ201 subunit  ali model follow..  15  9...KVCLIFAGGTGMNVATKLVDL--------------------------------------AVHCFDTCDKNVVDVHRSV------NVTLTKGTRGAGGN-------KVILPLVRPQIPALMDTIPEADFY---IVCYSLGGGSGSVLGPLITGQLADR-----ASFVSFVVGAMESTDNLGNDIDTMKTLEAIAVNKHLPIVVNYVP---------NTQGRSYESINDEIAEKIRKVVLLVN-QNHGRLDVHDVANWV................................................................................................................................................................................................................. 200
36 -13.1004e6e_A mol:protein length:314 Cell division protein ftsZ  ali model follow..  16  11...VIKVVGIGGGGVNAVNRMIEEGLKG---------------------------------VEFIAINTDAQALLMSDADVKLDV---GRELTRGLGAGAN-------DVGRKAAEDHREEIEEVLKGADMV---FVTAGEGGGTGTGGAPVVANIARSL-----ALTIGVVTRPFS--EGKRRATQAEAGIAMLREEVDTLIVIPNDRLLSISDRQVSVLD-AFKAADQVLLSGVQGITDLITTPGLINLDFADVKSVM................................................................................................................................................................................................................. 216
37 -12.9003wgj_A mol:protein length:308 Cell division protein FtsZ  ali model follow..  14  5...TLKVIGVGGGGNNAVNRMIDHGMNN---------------------------------VEFIAINTDGQALNLSKAESKIQI---GEKLTRGLGAGAN-------EIGKKAAEESREQIEDAIQGADMV---FVTSGMGGGTGTGAAPVVAKIAKEM-----ALTVGVVTRPFS--EGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMME-AFKEADNVLRQGVQGISDLIATPGLINLDFADVKTIM................................................................................................................................................................................................................. 210
38 -12.8002r6r_1 mol:protein length:338 Cell division protein ftsZ  ali model follow..  16  9...KIKVIGVGGGGSNAVNRMYE---------------------------------DGIEGVELYAINTDVQHLSTLKVPNKIQI---GEKVTRGLGAGAK-------EVGEEAALEDIDKIKEILRDTDMV---FISAGLGGGTGTGAAPVIAKTAKEM-----ILTVAVATLPFR--EGPRKMEKALKGLEKLKESSDAYIVIHNDKIKELSNRTLTIKD-AFKEVDSVLSKAVRGITSIVVTPAVINVDFADVRTTL................................................................................................................................................................................................................. 214
39 -12.8002rhh_A mol:protein length:325 Cell Division Protein ftsZ  ali model follow..  15  3...SIKVIGVGGGGNNAVNRMIE---------------------------------NEVQGVEYIAVNTDAQALNLSKAEVKMQI---GAKLTRGLGAGAN-------EVGKKAAEESKEQIEEALKGADMV---FVTAGMGGGTGTGAAPVIAQIAKDL-----ALTVGVVTRPFT--EGRKRQLQAAGGISAMKEAVDTLIVIPNDRILEIVDKNTPMLE-AFREADNVLRQGVQGISDLIATPGLINLDFADVKTIM................................................................................................................................................................................................................. 208
40 -12.2001fsz_A mol:protein length:372 FTSZ  ali model follow..  19  39...KITVVGCGGAGNNTITRLKMEGIEG---------------------------------AKTVAINTDAQQLIRTKADKKILI---GKKLTRGLGAGGN-------KIGEEAAKESAEEIKAAIQDSDMV---FITCGLGGGTGTGSAPVVAEISKKI-----ALTVAVVTLPFVM-EGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIVPNM----KLAFKVADEVLINAVKGLVELITKDGLINVDFADVKAVM................................................................................................................................................................................................................. 243
41 -12.1001w5f_A mol:protein length:353 CELL DIVISION PROTEIN FTSZ  ali model follow..  13  23...KIKVIGVGGAGNNAINRMIE---------------------------------IGIHGVEFVAVNTDLQVLEASNADVKIQI---GENITRGLGAGGR-------EIGEQAALESEEKIREVLQDTHMV---FITAGFGGGTGTGASPVIAKIAKEM-----ILTVAIVTTPFY--EGPERLKKAIEGLKKLRKHVDTLIKISNNKLMEELPRDVKIKD-AFLKADETLHQGVKGISELITKRGYIRLTSRFARIESV................................................................................................................................................................................................................ 229
42 -11.7001rlu_A mol:protein length:382 Cell division protein ftsZ  ali model follow..  16  13...VIKVVGIGGGGVNAVNRMIEQGLKG---------------------------------VEFIAINTDAQALLMSDADVKLDV---GRDSTRGLGAGAD-------EVGRKAAEDAKDEIEELLRGADMV---FVTAGEGGGTGTGGAPVVASIARKL-----ALTVGVVTRPFS--EGKRRSNQAENGIAALRESCDTLIVIPNDRLLQMGDAAVSLMD-AFRSADEVLLNGVQGITDLITTPGLINVDFADVKGIM................................................................................................................................................................................................................. 218
43 -11.6002vaw_A mol:protein length:394 CELL DIVISION PROTEIN FTSZ  ali model follow..  15  13...VIKVIGVGGGGGNAVNHMAKNNVEG---------------------------------VEFICANTDAQALKNIAARTVLQL---GPGVTKGLGAGAN-------EVGRQAALEDRERISEVLEGADMV---FITTGMGGGTGTGAAPIIAEVAKEM-----ILTVAVVTRPFP--EGRKRMQIADEGIRALAESVDSLITIPNEKLLTILGKDASLLA-AFAKADDVLAGAVRGISDIIKRPGMINVDFADVKTVM................................................................................................................................................................................................................. 218
44 -11.3002vam_A mol:protein length:382 CELL DIVISION PROTEIN FTSZ  ali model follow..  15  13...SIKVIGVGGGGNNAVNRMIE---------------------------------NEVQGVEYIAVNTDAQALNLSKAEVKMQI---GAKLTRGLGAGAN-------EVGKKAAEESKEQIEEALKGADMV---FVTAGMGGGTGTGAAPVIAQIAKDL-----ALTVGVVTRPFT--EGRKRQLQAAGGISAMKEAVDTLIVIPNDRILEIVDKNTPMLE-AFREADNVLRQGVQGISDLIATPGLINLDFADVKTIM................................................................................................................................................................................................................. 218
45 -11.2004dxd_A mol:protein length:396 Cell division protein FtsZ  ali model follow..  14  13...TLKVIGVGGGGNNAVNRMIDHGMNN---------------------------------VEFIAINTDGQALNLSKAESKIQI---GEKLTRGLGAGAN-------EIGKKAAEESREQIEDAIQGADMV---FVTSGMGGGTGTGAAPVVAKIAKEM-----ALTVGVVTRPFS--EGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMME-AFKEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIM................................................................................................................................................................................................................. 218
46 -11.1004m8i_A mol:protein length:400 Cell division protein FtsZ  ali model follow..  14  13...TLKVIGVGGGGNNAVNRMIDHGMNN---------------------------------VEFIAINTDGQALNLSKAESKIQI---GEKLTRGLGAGAN-------EIGKKAAEESREQIEDAIQGADMV---FVTAGMGGGTGTGAAPVVAKIAKEM-----ALTVGVVTRPFG--EGRKRQTQAAAGVESMKAAVDTLIVIPNDRLLDIVDKSTPMME-AFKEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIM................................................................................................................................................................................................................. 218
47 -10.2003wgk_A mol:protein length:390 Cell division protein FtsZ  ali model follow..  13  15...TLKVIGVGGGGNNAVNRMID---------------------------------HGMNNVEFIAINTDGQALNLSKAESKIQI---GEKLTRGLGAGAN-------EIGKKAAEESREQIEDAIQGADMV---FVTSGMGGGTGTGAAPVVAKIAKEM-----ALTVGVVTRPFS--EGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMME-AFKEADNVLRQGVQGISDLIAVGAGLDADVKTIMSN.................................................................................................................................................................................................................. 220
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.