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Query: 3cz6_A mol:protein length:168 DNA-binding protein RAP1, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GAIRSDFSNEDIYDNIDPDTISFPPKIATTDLFLPLFFHFGSTRQFMDKLHEVISGDYEPSQAEKLVQDLCDETGIRKNFSTSILTCLSGDLMVFPRYFLNMFKDNVNPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGTGRMEMRKRFFEKDLLVPRGSLast
1 -67.8003cz6_A mol:protein length:168 DNA-binding protein RAP1  ali model  100  1GAIRSDFSNEDIYDNIDPDTISFPPKIATTDLFLPLFFHFGSTRQFMDKLHEVISGDYEPSQAEKLVQDLCDETGIRKNFSTSILTCLSGDLMVFPRYFLNMFKDNVNPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGTGRMEMRKRFFEKDLLVPRGS 162
2 -55.1004bj5_C mol:protein length:202 DNA-BINDING PROTEIN RAP1  ali model follow..  99  46EAIRSDFSNEDIYDNIDPDTISFPPKIATTDLFLPLFFHFGSTRQFMDKLHEVISGDYEPSQAEKLVQDLCDETGIRKNFSTSILTCLSGDLMVFPRYFLNMFKDNVNPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGTGRMEMRKRFFEKDLL..... 202
3 -41.5003k6g_A mol:protein length:111 Telomeric repeat-binding factor 2-interacting protein 1  ali model follow..  22  1..................................................SEEKVSQPEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLASGQ------RADGYPIWSRQDDIDLQKDDEDTREALVKKFGAQNVARRIEFRKKGGSGGSGG 106
4 -10.2001ign_A mol:protein length:246 PROTEIN (RAP1)  ali model follow..  20  4.............................................................................................................PSHNKASFTDEEDEFILD---DEISHYVPNHTGNSIRHRRVYLSK........ 61
5 -9.0401ug2_A mol:protein length:95 2610100B20Rik gene product  ali model follow..  16  36....................................................................................................................WTREADRVILTM--SVISQQLGNKTPVEVSHRFREL.......... 80
6 -9.0202llk_A mol:protein length:73 Cyclin-D-binding Myb-like transcription factor 1  ali model follow..  17  13.............................................................................................................DRNHVGKYTPEEIEKLKIKHGNDWATIGAALGRSASSVKDRCRLMKDTCNTG. 67
7 -8.8405icn_A mol:protein length:195 Metastasis-associated protein MTA1  ali model follow..  10  89..........................................................................DITLFHAMDTLHKNIYDISKAISALVP--QGGPVLCRDEMEEWSASEANLFEEA--------LEKYGKDFTDIQQDFLPWKSLTS... 163
8 -8.6903osf_A mol:protein length:126 MYB21  ali model follow..  13  15...........................................................TPEEDEMLKRAVAQHGSDWKMIAATFPNRNA--RQCRDRWKNYLA-----PSISHTPWTAEEDALLVQKIQEIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQ 116
9 -8.3704gfb_A mol:protein length:272 DNA-binding protein RAP1  ali model follow..  17  20.............................................................................................................MAHNKASFTDEEDEFILD---DEISHYVPNHTGNSIRHRRVYLSK........ 77
10 -8.3401vg5_A mol:protein length:73 rhomboid family protein  ali model follow..  14  5......................................SSGSRQAPIANAAVLPQSQGRVAASEEQIQKLV-AMGFDRTQVEVALAAADDDLTVAVEILMSQSGPSSG...................................................... 73
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.