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Query: 3gf8_A mol:protein length:296 putative polysaccharide binding proteins (DUF1812), from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GASCDSFNEDLPECRLSVKFKYDYNMEFADAFHAQVDKVELYVFDKNGKYLFKQAEEGSALSTGNYLMEVELPVGQYQFMAWAGARDSYDITSLTPGVSTLTDLKLKLKREASLIINKRMETLWYGEVINVNFDGTVHQTETINLIRDTKIVRFGFQSYTGSWTLDMNDYDYEIIESNGHLGHDNSLLDDDVLSFRPYYMEQKDPATAYVDMNTMRLMEDRKTRLVLTEKASGKRVFDINLIDYLAMTNAEGKNLSTQEYLDRQSNYHIIFFLSESWLAVQIVVNGWVHRIQEENQLast
1 -103.0003gf8_A mol:protein length:296 putative polysaccharide binding proteins (DUF1812)  ali model  100  1GASCDSFNEDLPECRLSVKFKYDYNMEFADAFHAQVDKVELYVFDKNGKYLFKQAEEGSALSTGNYLMEVELPVGQYQFMAWAGARDSYDITSLTPGVSTLTDLKLKLKREASLIINKRMETLWYGEVINVNFDGTVHQTETINLIRDTKIVRFGFQSYTGSWTLDMNDYDYEIIESNGHLGHDNSLLDDDVLSFRPYYMEQKDPATAYVDMNTMRLMEDRKTRLVLTEKASGKRVFDINLIDYLAMTNAEGKNLSTQEYLDRQSNYHIIFFLSESWLAVQIVVNGWVHRIQEENQ 296
2 -77.5003pay_A mol:protein length:314 putative adhesin  ali model follow..  31  1.GSCDSIREDLPRCELWLEFVFDYNMEYADAFNPQVKSVDVLVFDSDDKLLFTKSVKVAALVGGNMSLTDELDFGSYKVLTVGSLSDRFRLNKLVPGTTTLQQVIVSLKRETGG-VNFEFQHLYFGEVVEVDHSNTNHKIYPVNLIRDTNRFNLALMGYEENKVDGTQYTFEIQAPENAVYSWENEPTGQGPITYVPYYTGEISDVVMSARLNTMRLLNRSDYKFIIRDANTEAEVWSYNLMTLLSIARPVSRELPFQEYLDRQSEWNLVFTVVGGFLQIGIVVGTWIHWLHGME. 313
3 -76.6004qdg_A mol:protein length:310 Putative adhesin  ali model follow..  30  1.GER--IYEDLAPCPHGVSLRFIYNMEYANAFAKKVDCLTLLVYDENGNYVDTRIVTGTELQDENYRMKLDLKQGNYHFVAYGGLACNKSMKYTPGEGTGYTDLQVELDSECLTNRRKNLHGLYWGELTLAT--ADLYSEGTVEMMKNTNNIRVVLQQMNG-EPVDDKKFEFEITDDNILFSYDNNLLENGMVTYTPWAQGQASAVVAYAELSTSRLMVRDSPKLTVRRKADGVEIINIPLINYLLMLKSDLYSMDSQEFLDRESEWSMIFFLSLEWIKTYIKINDWTVRINDIRQ 310
4 -69.3005nfi_B mol:protein length:281 Minor fimbrium anchoring subunit Mfa2  ali model follow..  20  1.............CPRGVYVNFYSECAENPSYPAEVARLNVYAFDKDGILRSANVFEDVQLSAAKEWLIPLEKDGLYTIFAWGNIDDHYNIGEIKIGETTKQQVLMRLKQDGKWATNIDGTTLWYATSPVVEDGADQYIHTRANLREYTNRVTVSVDSLP-----HPENYEIKLASSNGSYRFDGTVA-KADSTYYPGETKVVGDSTCRAFFTTLKLESGHENTLSVTHKPTGREIFRTDLVGAILS-----SQYAQNINLRCINDFDIRLVAHDTYVVVQIWINGWLIHS..... 280
5 -39.2005nf4_A mol:protein length:451 Minor fimbrium tip subunit Mfa3  ali model follow..  11  17FQGAM--RGVDPQ-DVYLLVNARAANMDAEDFEDRVHSLAMLVFDSNTEKVAEHFSSSIGSGTSTYVFTVKLKPGQRDFFFVANIPNMQTAMASIVNKSDMNHFMQVFRDLDPIHYHNATNNPMSRMYSNQTVTIGPDGENNVKLQRVVAKLDVNIVE------GVENLQKIELCNANVHYRLRRVGATNQWLGYMPEKWWGNTGNAENKPINFFRLTTRGGLVYDVPIITHEGAIPGGQYLPFAKGLLADKPSYT----VYRNRHYIYRIKTLPDKIEVKYSICDWNIVTNDTY. 348
6 -37.3005cag_A mol:protein length:318 Uncharacterized protein  ali model follow..  9  1GMLTGCSRRDILDDYPVSGVDIKLD---DGVTDQLPEGVRVIFYPKNGDGRKVDKYLSVR------GGEMKVPPGRYSVVVYNYNTESIRIRGEEETIEAYTGNCNGLGIEGTEKMVWSPDSLYVLNIDELKIEKSEEVRLDWKLESVVKKYSFAVE----KGLEYVATVVGSIDGLSDCYCIGKGRGVCSSQPIY--FEVKKGDNKVTAFFTAFKQVKEIILILKFIKTDNTVQEATIDVTEIIGTLENAGTGEDGKPTPPPEIELPPDDKIPDGGGGMGGNVDGWGPEDN.... 312
7 -36.0004gpv_A mol:protein length:348 putative cell adhesion protein  ali model follow..  11  1..GND--GNNVPGEQAVLTIKLRAAGPATDTEDAVINNYLVFLFREGGALDCAPYEG----SSNAAATITTGTTAAKKAYVVANTGALAGLFATVKTETDLLAVTGSLMDNTDNASTQTKTNLWMSGESEVKFNGGTNAQVTVSLSFVAAKIQLIVKDNRKNMTGGTITIAAVLLFAGKKGRFFGSAAEKVTQAVSPGDFTINAGSTVFNHFYTFGNDGTTQPTILAIKGTSSPIFYPILF-----------TNTDARHTIEPGKSYTVTVTLNGSSIEVTVTAAQWVTQPVDKE. 346
8 -32.3003up6_A mol:protein length:347 hypothetical protein BACOVA_04078  ali model follow..  10  1....GDVAYELPAHTTRAQLSIDLVNNGDVEQQEKINSMRFIVFGSTPGGVRLDVNEHILLSTPETATDIDTSSNDILVVVIANEPQSTSQLDGIANLLTLQEMIYDISSILNSDGQIISATPMTGVIRDISIAPDETKTVQMVIERAVARVDVFIEAIDGGAVTGYT--SVTLHNFSHDSYFTHSWTAATTETWAYSSAPGAENRKLLCSFYTAERDYSDRLSISMLKGPSDVTGITGKVIESVTKVDGTGSPTAQPFTIRRNNVYQVTARVGKGIQILTISVEDWGERQDDLD. 344
9 -31.6003liu_A mol:protein length:402 Putative cell adhesion protein  ali model follow..  11  1..GDD---KAPVLEKAQLALAIKSETGETTPTDADVNTLTVGVFGVDGWSVIYTKDATPNSDGTKDVGPQEVYAGEAHVVVVANAAPV--IQTELAKAKDITDFIETTINLSDETLTKG---TMSSKVLDVTLGKEVYGAGPVPLVRDVASIALAGADIGNPENANYESKSFVLKEVTKYDALAKKHVENDPALNHEFYVYENTKGEVKSGESNVNEAYANHTLLIVESITKENCYYAIPVGE---EVTIDGTEKRSKFYVQRNYKYEISLTIIGTNVSASVKVEPWNVKTIHEE. 400
10 -31.0004q98_A mol:protein length:369 Major fimbrial subunit protein  ali model follow..  13  2........KD-VETNATVSFIIESRAVGDDLTDAKITKLTAMVYAGQVQEGIKTVEEDGGVLKVEGIPCK--SGANRVLVVVANHNYELTGKSLNEVEALTTSLTAENQNAKNLIMTGKSAAFHYGYPGGTASDNLVSAGTPLAVTRVHAGISFAGVEVNNYYSFKPADAKIAALVAKKDSKIAGLYTPDAAGETYELEASLNTNYAVGAGFYVLESKYDASNELR-FCDGDGTTYYPVLVNYDGNGYIYSGAITQGQNKIVRNNHYKISLNITGANLNVTCQVTPWVVVNQAAT. 368
11 -30.9004jg5_A mol:protein length:355 Putative cell adhesion protein  ali model follow..  11  1..GKD--DPVLPLEGAKLSVAVKASGTATKAYEAYINNLAVVVFNETGTELLGYKWEALSGAEHSAIIAPTTKAVRARIIVLANVPRDDEFQTRLVDLSSQSQTNLTMSSQVIVTKSALSEEDNYLGYTDLGDQNVDGISDPILLTRVAARIDLVNISTRFAGTPFAGR-AVGIYNMKTKSYYDAVRNSEDTSFEDLLVNDGTSISNTPFVHYVMENMKSDDHTMIAVK-RGNSSYQDHTKIFTAVINAGGLQNGYDHNFIRRNYVYRLRIYFDGTNLNIAVQVVGWGPVMQHPV. 353
12 -27.0003r4r_A mol:protein length:296 hypothetical fimbrial assembly protein  ali model follow..  12  7........FDTDELSFDMSLVLLTGDMQTKA-ELTIQNCHVAVFDKDGKRIYFKNFYSKDLGEMKGVRTFGKEDKKVSVLVVANANNA--NNSPFDNLTTYDGVDNSYTAKTIAKGPVTASLLKIGKSETTLKYNQDNAPVTVSLIQLSAKIEYTGV........................................................................................................................................... 177
13 -26.9004jrf_A mol:protein length:508 putative cell adhesion protein  ali model follow..  10  1.GACS--NDE-DGREAYMSVSVAMGEHHGTADEQNVKEVLLALFDASDVCLETKTLATTDYILNVGGKAFKVPSATAKVLAVVNPSDK--FKTACVASASWSAINGAVEQTLDEVTGTSKNNFMMINAGATAISEAQADRSMIYVDRVVAKVSLGTNGLKVPAGVTCTFGDWALNITNKSMFPYSEIVMPAGLKVADDGTLPADFSAMADSKYCLENTMAADAQTQVEYFQKGVCYYNILIHH---DDAITATMAHGKYGVVRNNWYTLTIN-KEAYLSVEITVNPWTTWSQGVD. 507
14 -26.3005dhm_C mol:protein length:282 Immunoreactive 32 kDa antigen  ali model follow..  12  1........................ERNQGSAAERLITNLYLLLFDQSGANPAKYYIAGNTFSGGIKLDMTQSEAGERKVYVVANVDNA--VKTALDAVANESDLQVKRTTAMPWSTDIASPFLMSGNKTHDFLANR--LLDNVPLVRAIAKVELNISLSEKIVNGSLSEFKFRYVNFDKETYVVKPTTKPDNLIGTGYTLDANGKVTALRIVTYLNERDSKGATVEV------ALPRVDDGTLPPPEFGPELYRLPLPDKILRNHWYKYEVEI....................... 282
15 -24.9004rdb_A mol:protein length:305 Immunoreactive 32 kDa antigen PG49  ali model follow..  11  1...........GDRSIEISIRVRYERNQGSAAERLITNLYLLLFDQSGANPAKYYITGNTFTGGTKLDMTQSEAGERKVYVVANVDN--AVKTALDAVANESDLQVKRTTAMPWSTDIASPFLMSGNKTHDFLANR--LLDNVPLVRAIAKVELNISLSEKFQIVSLSEFKFRYVNFDKETYVVKPTTKPDNLIGTGYTLDANGKVTALRIVTYLNERDSKGATVEV------ALPRVDDGTLPPPEFGPELYRLPLPDKILRNHWYKYEVEI....................... 305
16 -21.6004k4k_A mol:protein length:282 Putative cell adhesion protein  ali model follow..  10  3.......ENTPQPTDGRVALEATSGIRMNTRAYDK-DAIGIYMLNGDATDGNGNRKYTTAQTAENGSFTAAEGQTIY----FPVDASQRDFVAYYPYRETLADGNVYTVDVSVQTPQKDIDLMG---AAKVEGKDKTDPKVAFVFTHKLVKLDITIKADGTSLTADLAGTTVSISNQQTAATYNVVTGGDATVTTGTTKEIVLHTDGLKAEGIVLPAASTAGMALTFTVPGLEGQAFHWDV-----------NSAAQSKAFVAGSKYLYTITISKAGVEVSSKVEDWT........ 270
17 -20.9003t2l_A mol:protein length:308 Putative cell adhesion protein  ali model follow..  6  1..GSD--DREMDD-ALRVPLQVSSAVIKQEVVTRLAGAIGIFLSGTEPESGQKYVYSEGHWGPPTANDTIYLVGNDADVCAYYPYKDSYTDKTVIP---------------LQSQDYVETEDIYYALNTMI---NGFTPAITFDMVHAYSLVELKISRENYFMPCEISKITLKNSNLIKKGTINETGNYDLTTVTDASPHTLSVGESYVCRVLMIPVPLKIERTDAEGGEFGLSVSLVID------QQMLVEIPYSELGEFRQGEKYVIGLKIKGTEIVPTVKALEWE........ 295
18 -19.0005nf2_A mol:protein length:501 Minor fimbrium subunit Mfa1  ali model follow..  11  1..........................PGEWAGKDKIEKVSIYMVPQGGPGLVESAEHNAILKPKKGIKVNSAVGKTVKVYVVLNDIAGSTQAQALGTVADGPNPATAAGKIAKKNGTTDETIMMTCLVSEANAIAGIKNQAKVTVERSVARAMVSTKAAAGSVLATITDIRWVVAQGERRQDVTGELANALSGKFLLPNTHKSGANAASSDYSVTDPKVGGVAGMKAHKYVKGKVLYYAWLNP-----STTSPDSWWNSPVVRNNIYHIHIK-QDTFMSVEVTVLPWKVHSYEVD. 500
19 -18.8004h40_A mol:protein length:327 putative cell adhesion protein  ali model follow..  12  1.GAAG--PEEDMEDRVRIDPVAGGYYPSISPSAQT-STIRLVVYDDAKNLLYPCEVDDNGAVISSSSTPLYMKAGTYYFRILSPAKALNS----KGFVNIGNGEYLLATDDRYTQTAMTAVTITKIDEGGTL--NNVQTLYLPPIINQTARMQFTVRAGEGVHTLEMLAEGIEISGIQQPLDNTPVKVGDQSASVRITQATRNADNSLVAHTGVLPTDRSHSISVLLNLKVNGNPQYQMLLTGLYLTAG-------------HSYNYTATVKISNGVTVLTWQNRSWTE-NVVMDK 327
20 -15.3005nf3_A mol:protein length:523 Minor fimbrium subunit Mfa1  ali model follow..  11  2...........AKSYMSMTLSMDYHYVGEWAGKDKIEKVSIYMVPQGGPGLVESAEHNAILKPKKGIKVNSAVGKTVKVYVVLNDIAGSTQAQALGTVADGPNPATAAGKIAKKNGTTDETIMMTCLVSEANAIAGIKNQAKVTVERSVARAMVSTKAAAGSVLATITDIRWVVAQGERRFLLPNTHKSGANAASSDYKRGNTAYVLVRAKFSVTDPKVGGVAGMKAHKYVKGKVLYYAWLNP-----STTSPDSWWNSPVVRNNIYHIHIK-QDTFMSVEVTVLPW......... 523
21 -14.3003ufi_A mol:protein length:297 hypothetical protein BACOVA_04980  ali model follow..  5  5.......SGKADRAYKPIEIYGNINEVVNNVQETRADRIGVTVEADEDNATANAVDTYINIQGSTDNNIRLKGEGEFTLNAYYPYQGANG-----TLPGTEGVIAKTISGADQTTDKQPQIDFLFAQAT----GVRAESPVTFDFSHKMTKIILKFK---ATNGATLNNMKVYLKSLQLEGSFNVAKSGATPNSELSMDIAKPAEGEMTASIILFPQDMPEKVLLEVRMNDETYTQ------------------YMPVQNLESGHAYPYNVTFENPAMTIKAEIEDWI........ 284
22 -14.1004dgu_A mol:protein length:247 putative cell adhesion protein  ali model follow..  8  2.......DELQETSKEATNFSISIDDALSDPLTRTSND-----FPARNSI--TTGEVISMAASGQDYTPFIVGKDSRAWNEIGTATGTVTFYAHYP----ALTDEAATRSGGNKRYLKGGQEHLFGTAEA----APGSQNVSLKFKRMTVPVIILDENDRPYEGEAKVELSLK---NEGTQDLLNGTIEINENALSENIEVKKVSEGVTT-NVLPQKINAGEEIGTITVGGVTQKI-----------------SAVEDLDLKAGSTLSVRLSKKFGGGIIDGNVPLYR........ 247
23 -13.9003sy6_A mol:protein length:291 Fimbrial protein BF1861  ali model follow..  8  2........EQEDKVSGEKTLAVVSASSDDRPSTRGIYALGVFRTTANTYAPLYNVKHIYSGGEWGADDVIKVDYRNASFFAY----------PYHTATGNYAGLAGGTTLTLQAQLFNAGEDICYGAGEASGGGVYNPFVEFLNMKHAYARLRLTLTRGEKFDKTKKCNIQITFKSNNANFYLTRSLAVAAGYVHNPNVNIATGKSVTYEYMFPPQPLDGSKLTILVTVDGVTRSC----------------DISTLGSSLDSGKYYGVSLTFTDVGIILSAVVTVNN........ 278
24 -13.5004qb7_A mol:protein length:359 Uncharacterized protein  ali model follow..  7  3......MTEMNPDTNRTIGLDVYTEVQTRGTETTT-AGFGIFAYQTSSAGWNSEKGNTTPNFMYNEHATWT-DDKKITFFAYSKPEVGTDQKITLSGQNAKGAPTITFEVKTSNNWKDMIDLVTDCHTAIQDQTNESNKTVQFKFSHVLTQIANIKV---KPDVNLGTDTKIFVTGLKLDPGSTTLYNKAVNKTTTDQWGYNKSSINVSDDQNATALFSDTEALYFIPVNNKNGTTNAGDLKLKINYDIVTKVTDTSNLTSTTKHTYVLTIKMNAIKITVEDNMEGWTDDSDNVEK 359
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.