current user: public
If you have questions about the server, please let us know.

Query: 3gja_A mol:protein length:319 CytC3, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .
# Score Template Links and tools%idFirst MTTVSEQANFTFSPEEVARFERDGYIGPVKIFEPEEMTRRWNIIRRQLLDRSLAIYPDSNGKANISNYDRHLDIDLLAEHIMRPEIVDRVGSLIGRNLLCWRSEFFPKYQGDEGTDWHQAATFAHATGKPQIIWPSDEGRPAFIGTITVWTAFTHSTEQNGCLQLMPGTHTSMNYDESKGMDYDADAINQREKDGIKRGFFGYDYRSLQKDPDWKPDESQAYPMVLKPGEAVIFWSNTMHASLPHTGSKTDYRMGFAARYVPTQVQVYPGTENLTEYGDGINLEKYGAVLTSGVDEYGHNRIARTSQRGYEFVPRQIPSLast
1 -123.0003gja_A mol:protein length:319 CytC3  ali model  100  1MTTVSEQANFTFSPEEVARFERDGYIGPVKIFEPEEMTRRWNIIRRQLLDRSLAIYPDSNGKANISNYDRHLDIDLLAEHIMRPEIVDRVGSLIGRNLLCWRSEFFPKYQGDEGTDWHQAATFAHATGKPQIIWPSDEGRPAFIGTITVWTAFTHSTEQNGCLQLMPGTHTSMNYDESKGMDYDADAINQREKDGIKRGFFGYDYRSLQKDPDWKPDESQAYPMVLKPGEAVIFWSNTMHASLPHTGSKTDYRMGFAARYVPTQVQVYPGTENLTEYGDGINLEKYGAVLTSGVDEYGHNRIARTSQRGYEFVPRQIPS 319
2 -109.0002fct_A mol:protein length:313 syringomycin biosynthesis enzyme 2  ali model follow..  56  2...SHMSKKFALTAEQRASFEKNGFIGPFDAYSPEEMKETWKRTRLRLLDRSAAAYQDISGGTNIANYDRHLDDDFLASHICRPEICDRVESILGPNVLCWRTEFFPKYPGDEGTDWHQADTFANASGKPQIIWP---ENEEFGGTITVWTAFTDANIANGCLQFIPGTQNSMNYDETKRMTYEPDANNSVVKDGVRRGFFGYDYRQLQIDENWKPDEASAVPMQMKAGQFIIFWSTLMHASYPHSGESQEMRMGFASRYVPSFVHVYPDSDHIEEYGGRISLEKYGAVQVIGDETPEYNRLVTHTTRGKKFEA..... 312
3 -93.4005nch_A mol:protein length:268 Leucine hydroxylase  ali model follow..  15  2.......GRMQLTADQVEKYKSDGYVLLEGAFSPEEVHVMRQALKKDQEVQGPHRILEEDGRTVRALYASHTRQSVFDQLSRSDRLLGPATQLLECDLYIHQFKINTKRAFGDSWAWHQDFIVWRDTD-----------GLPAPRAVNVGVFLSDVTEFNGPVVFLSGSHQRGTVERKARETSRSDQHVDPD-----------DYSMTPAELSQMVEKHPMVSPKAASGSVMLFHPEIIHGSAPNISPFA--RDLLIITYNDVANAPKPAGEPRPE-------------YVIGRD........................ 253
4 -88.9003emr_A mol:protein length:310 EctD  ali model follow..  17  24YTDRSKDNQAPITKEQLDSYEKNGFLQIKNFFSEDEVIDMQKAIFELQDSIKDVASDEPESNDIRSIFHVHQDDNYFQDVANDKRILDIVRHLLGSDVYVHQSRINYKPGFGKEFDWHSDFETWHVED-----------GMPRMRAISVSIALSDNYSFNGPLMLIPGSHNYFVSCVGETPDNNYKESLKKQKLGVPD---------EESLRELTRIGGGISVPTGKAGSVTLFESNTMHGSTSNITPYP--RNNLFMVYNSVKNRLVEPFSGGEK........................................... 282
5 -88.4004mhr_A mol:protein length:314 Ectoine hydroxylase  ali model follow..  16  24VVHSEWTNDAPISARQAAAFDRDGYIVLEDIFSADEVAFLQKAAGNLLADDADTIVTEPQSNEIRSIFEIHAQSPVMARLAADARLADVARFLLGDEVYIHQSRLNYKPGFGREFYWHSDFETWHVED-----------GMPRMRALSMSVLLAENTPHNGPLMVIPGSHRTYLTCVGETPDDHYLSSLKKQEYGVPD----------EESLAELAHRHGIVAPTGKPGTVILFDCNLMHGSNGNITPFP--RANAFLVYNAVSNRLEKPFGVE---------KPRPWFLARRGEP-AALRVERGPLVETVPA...... 308
6 -86.1002a1x_A mol:protein length:308 Phytanoyl-CoA dioxygenase  ali model follow..  13  13.QFQYTLDNNVLTLEQRKFYEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKSKSEYAPSEKMITKVQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDGKKTSRHPLHQDLHYFP------------RPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGG-------------------VNKMFHGIQDYEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGF--RKAISCHFASADCHYIDVKGTSQENIEKEVVGMFRARLVKGER........................ 305
7 -85.4004xab_A mol:protein length:252 EvdO2  ali model follow..  14  1MDAME--VVGTIDHRDREEFRSRGFAILPQVASESEVAWLRQAYDRLFVRRATPGAEREGPPLLPQIIKPEKYVPELLDSPHFARCRSIASAFLAEEELEFYGHAILKPPRGAPTPWHQDEAYMDPR--------------WRRRGLSIWTTLDEATVESGCLHYLPGGHRGPVLPHHHIDNDDRIR----------------------GLMTDDVDPTSAVACPLAPGGAVVHDFRTPHYAGPNLTDQP--RRAYVLVFMSAPAEVADPEP--------------RPWMDWG.......................... 252
8 -83.9002opw_A mol:protein length:291 PHYHD1 protein  ali model follow..  14  3..........CLSPSQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEEKGNFLVPPEKSINKIGHALHAHDPVFKSITHSFKVQTLARSLGLQMPVVVQSMYIFKQPHGGEVSPHQDASFLYTEPLG--------------RVLGVWIAVEDATLENGCLWFIPGSHTSGVSRRMVRAPVGSAPGTSF------------------LGSEPARDNSLFVPTPVQRGALVLIHGEVVHKSKQNLSDRS--RQAYTFHLMEASGTTWSPEN............................................... 276
9 -83.9005ep9_A mol:protein length:305 SnoN,Epimerase SnoN  ali model follow..  17  14PADLPAESDPAALERLAARYRRDGYVHVPGVLDAGEVAEYLAEARRLLAHEESVRWGSGAGTVMDYVADAQLGSDTMRRLATHPRIAALAEYLAGSPLRLFKLEVLLKENKSVPTAPHHDAFAFPFSTAG--------------TALTAWVALVDVPVERGCMTFVPGSHLLPDPDTGDEPWAGA-------------------------FTRPGEIWMPRVTVPLRAGDCTFHHARTVHSAGANSTDEP--RLSTSAVYMDATAAYRPTGIAFLDDLPGTGADP----LREGA......................... 266
10 -82.7004xaa_A mol:protein length:223 Putative oxygenase  ali model follow..  15  1MTTAT-----LDRAAAIERFRRDGFANAGPVLAPDAIARLKAGAERLITRFTDEVEGDERPVLYRVHNLEKQDWAPERDLLHREELAQLAAAFVDGPVVPTAYALVLKEPYAAEVPWHRDRVNVG-----------------PRTVCNLSICLDDAGPHNGCLEAVPGSHLLPDDAE----------------------------------VAKVRATGPVVPVPVSQGDVVVHDVRLVHGSGPNANGSW--RRTIVIEYADPAAPPAP.................................................. 223
11 -82.0005epa_A mol:protein length:279 SnoK  ali model follow..  18  8.DPGGPTTAENLSKEAVRFYREQGYVHIPRVLSETEVTAFRAACEEVLEKEGREIGAGEDEVQVHYVAQAWQKHPELRSLVLHPEISGIALRLAGAPLRVYSSDILVKEPKTLPTLVHDDETGLPLNELS--------------ATLTAWIALTDVPVERGCMSYVPGSHLRAREDRQEHMTSF-------------------AEFRDLADVWPDYPWQPRVAVPVRAGDVVFHHCRTVHMAEANTSDSV--RMAHGVVYMDADATYRPGVQ-----------DGHLSRLSPGDPLEGE.................... 261
12 -78.0003nnf_A mol:protein length:344 CurA  ali model follow..  13  12LYFQSNAMNREQVEQLKQEYEEKGYCQIKKIFDFSAIKTIQKTLDQAKQESQISKEKVGGIDDIDTNDHAYDLVKYDFVSSFIQEKLALLNYITGKNLMIMHNALFSVEPNHKGLPWHVGVGSFSFTKTE-------------DFGASIWIPLDKITKEHGGMQYVSTKIFPGQFYYSVFDLHLKNNIKWDESQGDLNEYVANAYNKITEDVIDYTIKDGYEEDEYNLGDAFFFNKYVLHQSVPLKPGLHKLRRAFVIRLVDYDTRVDEERLGLFSKYSQLNKDSVLVMVSRAVQKGLKSPYLRDIPHVQQTLAARMAA 336
13 -75.9004xbz_A mol:protein length:334 EvdO1  ali model follow..  17  28.IAECDIRRTGLLPEHVTAFRRQGVLVVRGLLTPQELADVQEAGRALIDRAWSTLEPDQPGAAPVRIEYVVDKARPIAMLAGHPLLLRIMEQLVGPNLIPTWDSMVFKTPAGAPLAWHRDAGLYDNAV----------GVTGAGRVIDAGIYLDPAP-EDNCVWCIPESNYWGDDRLTATAD---------------------------QLNASEWDTTGAVPAVMQPGDLLLHNILTLHGAPAVVGKQ---RRVIYFEYRPAEVEWQLGPHSAE............................................ 270
14 -70.8002rdn_A mol:protein length:288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II)/alpha-ketoglutarate dependent hydroxylase  ali model follow..  12  12...TDCTPLLGDRAALDSFYEEHGYLFLRNVLDRDLVKTVAEQMREGLVAPHATLEELTIDSFESVDEVAMHDYVKYDAFWNNPSTIKVFEQVFGEPVFVFLSTTISEEPSHYLTPFHQDGFYIGPN----------------QDFRTFWIPLIRTTRESGGVALADGSHRRGKRDHVLNESFRRF-----------------GHPVRGIPPTEVSEDEHLLHSPMEPGDILLFHAHMCHKSIPNLSKDPRLRMSMDTRVQPAKSHR.................................................... 257
15 -68.9004xcb_A mol:protein length:261 oxidase/hydroxylase  ali model follow..  9  2......HMVPALTREQLYIFDTTGFLVIPGVFGSGEVESFRSELERLDTV-------DPGFPRTRRYPDLPAASPVFARLALDDRLLAPVRDVVNQPLRLLEGYGLRRTKDSGDRQVGRDLSITH----------TYHDGKLYCPYVKALVYLSDQSPEDGSFCYVQGSHKANFPLLRERAERGE------------------------NTSLVDSGFPTLSDVFVRSGDVLLLNEALMHGTRRKLTEGD--RLLTAFGYGPTFFTEWRELDAETADLRGAGYVDHDVE.............................. 256
16 -62.2005ybm_A mol:protein length:314 PrhA  ali model follow..  12  17.PRLQRFPATASADEIFAAFQEDGCVVIEGFISPEQVARFSQEVDPAMEKIPVEVTNNGSNDRTKRFSKCVIASPTFRNIIESDLMHELCDRVFSKPYHFNDNMVIEVQPGAPAQRLHRDQELYPWWNSMGP--------AGPECVINFFCAVTPFTEENGATRLVPGSHLWPEFTQINERD------------------------------CPQFGKIETVPAIMQPGDCYLMSGKVIHGAGHNATT-TDRRRALALAIIRRELRPMQAFSLSVPMKLAREMSERSQTMF-G.......................... 275
17 -61.7006EC3 Entity 1(prereleased)  ali follow..  13  238.VCDIVVVGRARLGAQIRRFREDGFVNAGPVFADDTIARLKAGAIDLISRFTENYDVENEAPVLYRIHNLEKQDWAERELLFRPELAELAAAFVGSPVVPTAFALVLKEPKAAGVPWHRDRANVA-----------------PHTVCNLSICLDTAGPENGCLEGVPGSHLLPDDID----------------------------------VPEIRDGGPRVPVPSKVGDVIVHDVRLVHGSGPNPSDQ--WRRTIVIEFANPAISLPSLPS............................................... 465
18 -60.1005ybl_A mol:protein length:314 Multifunctional dioxygenase ausE  ali model follow..  11  17.SRLQKFPATAPADEIYAAFKEDGCVIIEGFVPPDQMARFSQEIQPAMEKIQVQVTNDGSNDRVKRFSKLVTTSPTFRHILENDLMHELLQRVFSKPGHFNDTMVIEVQPGAPAQRLHRDQELYPWWNSMGPD--------APECLVNFFCAVTPFTVENGATRLVPGSNRWPELTLINATD------------------------------CPQYGKIDSVPAIMQPGDCYMMSGKVIHGAGHNATL-SDQRRALAFSTIRRELRPVQAFPLWIPMQIATELSPRTQAMF-G.......................... 275
19 -58.3004nao_A mol:protein length:326 Putative oxygenase  ali model follow..  13  15.TGTKRFSIQSDPVEIHRAIVEDGVAIIEGFLTPEQVQKLNKDVDAPLKADREQLKFKADPDHVARVHNLVDFSHCFRHEILNHELLHKICRLTFEEYWLGYGAVIENGPGTTEQKWHRDQPRYPLV---------KEGPDAPEGMLNFFTALTDFDAETGKTQYILGSNKRVELGEPD-------------------------------------ADHPIEYVGLKPGDTTIVSGKITHRGSDNRSDKM--RRAMPIMIIPSILTPFDATCHLSRELVETMTPLAQKMI--C.......................... 272
20 -57.1004y5s_A mol:protein length:315 Verruculogen synthase  ali model follow..  14  4FTVDSKPQLQRLADRMCRLLEEDGAFILKGLLPFDVVESFNRELDVQMAIPGERLLADKYPPHFKYVPNVATTCPTFRNVLINPVIHAICEAYFQRTGDYWLSAAFLRESGMPAQPFHRDDATHPLMHYQPLE--------APPVSLSVIFPLTEFTEENGATEVILGSHRWTEVGTP--------------------------------------ERDQAVLATMDPGDVLIVRQRVVHAGGGNRTTAGKPRRVVLAYFNSVQLTPFETYRTMPREMVESMTVLGQRML--G.......................... 259
21 -55.6005m0t_A mol:protein length:294 Alpha-ketoglutarate-dependent non-heme iron oxygenase EasH  ali model follow..  16  10.PTLRRIPRSAGDEAIFQVLQEDGVVVIEGFMSADQVRRFNGEIDPHMKQWELGQKSYQELAGMRQLSSLPLFSKLFRDLMNDELLHGLCKRLFGPEYWLTTSSVLETEPGYHGQELHREHDGIPIC--------TTLGRQSPESMLNFLTALTDFTAENGATRVLPGSHLWEDFSAPPP------------------------------------KADTAIPAVMNPGDAVLFTGKTLHGAGKNNTT-DFLRRGFPLIMQSCQFTPVEASVALPRELVETMTPLAQKMV--G.......................... 260
22 -54.5005zm2_A mol:protein length:306 Dioxygenase andA  ali model follow..  13  15MPPIRRVNASQGSDAAYQILQEDGCVIVEQVICPNIIAKISDDVNRVMDKATIGAKKGEQHNRTIHMGDLVLTSKTYRDLLNLPFAHEVLEKVFKKDYWLNMGNILNMLPGAEAQRPHRDDYLYPVSQHM-------DPATSPDLMINITFPLNEFRHDNGGTLLLPKSHTGPNADFYA-------------------------------------NAEDLPAAEMQVGDALIFTGKCVHGGGANRSDKP--RIGLALAAQPGYLTPRESNVNVPRDIVETMTPLAQRMI--G.......................... 269
23 -49.3005y7t_B mol:protein length:315 Iron/alpha-ketoglutarate-dependent dioxygenase asqJ  ali model follow..  11  1MMTSKDHVKSQIPHKIWPTVEEHGAAIIESFLSLDIVRRLNEEVDPFVKIEPIPAAKTKDSTTTRLVNVLAPISKAYREDVLNSKVLHRICSDAFHDYWVLMGAVMELAPSNPAQPLHRDMRFSHPI-------VEYLKPDAPATSINFLVALSPFTAENGATHVILGSHKWQNLSNV--------------------------------------SMDATVRALMNPGDALLITDSTIHCGGAETTG-TETRRLLTITMGISQLTPLESNLAVPRPVIESLTPLAQRLL--G.......................... 262
24 -35.1004rgk_A mol:protein length:418 Uncharacterized protein  ali model follow..  12  63..HADDIINGKVTEEQKAQIKQRGCCAILGVFPQEKATAWNREIGDYLDRNNFVERLKNAAEDNYFGTLAAYWSTPQVEARQDKRMQAVQIFLNNNRVVTYADRTRRRPPKSSSLG-HVDGG-FAAEGRPEVREFPSPAVCSMFRTFQGWTALTPQRTHAGTLNVIPIANA--------MAYILLRALQDDVADDDLCGAAPGRALSASEQWHPLLMEAISPIPDLEAGDTVFWHCDVIHSVENEHNG-EFDSNVMYIAAAPWC....................................................... 365
25 -33.6002csg_A mol:protein length:424 putative cytoplasmic protein  ali model follow..  11  68..PFSELAMGNISDATRAEVKRRGCAVIKGHFPREQALAWDQSMLDYLDKNHFDEVYKGPGDNFFGTLSASRWSQAQMQARQSEEMALAQSFLNRDISIIYPDRIRRRPPGTTSKGWQYDPWNAAHRTDVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLLHVVPIPEAMAYILLRP--------LLDDVPEDELCGVAPGRVLPISEQWHPLLMAALTSIPPLEAGDSVWWHCDVIHSVAPVENQQG--GNVMYIPAAPMC....................................................... 371
26 -32.4002dbi_A mol:protein length:461 Hypothetical protein ybiU  ali model follow..  10  105..SYADIKAGHVTAEQREQIKRRGCAVIKGHFPREQALGWDQSMLDYLDRNRFDEVYKGPGDNFFGTLSASRWSQAQMQARQSEEMANAQSFLNRDVSVIYPDRIRRRPPGTTSKGWQYDPWHAAHRTEVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLLHVVPIPEA--------MAYVLLRPLLDDVPEDELCGVAPGRVLPVSEQWHPLLIEALTSIPKLEAGDSVWWHCDVIHSVAPVENQQG--GNVMYIPAAPMC....................................................... 408
27 -27.8006AKZ Entity 1(prereleased)  ali follow..  7  65..DFIDIKDNKLPQQVSELFKQRGCLMIENVIDVDRIDIWFNELVEFCKTHPETAGYTFPNPTSWYNV---FWSKPQTEARFHPNMKAIFKAMSKDTQLVYGDRIRIREPGKAALPLHLDSS-WEDIMYSEVYKSIKSTICSSFRTLQGWLALSNNKSGEGTLRVLPSLKLSRPFFWKDPESGNIDDYEIDLITPKFPGTVPGTGQLFLDKFYPHLHQGIISIPDVKKGSFVFWHCDLPHEVDREHNGNG--SSVLYYGQTPLSITNIQTLLDTRDAFLKNISPADYRSQLNEEEKQKEFQGANIDDLKNDIDSKRSMG 433
28 -21.2005iqs_A mol:protein length:315 WelO5  ali model follow..  8  32FLDINATEVKKYPTAIQDIIINRDGMIIRGVFPRDTMEQVARCLEEGNDGGMKSILNGQSPDLKDYFASSAIFRQACRTMFQGEQVESIFHSLSGLPVEIYTPATIRLLLEGREIAVHVGNDFLLMPAANHLKTLLDLS-----DQLSYFIPLTVPE-AGGELVVYSLEWN----------------------PQEASKYAQMQEYMDDVEFKIKSNQSQSVAYAPGPGDMLLFNGRYYHRVSEVIGNSPRRTIGGFLAFSKQRDKIY................................................... 305
29 -17.5003dkq_A mol:protein length:243 PKHD-type hydroxylase Sbal_3634  ali model follow..  13  1...........MGSDKIENLYFQGLIEIPNVFSKQEVSHLREQLDARRWIDGNQTSGAMATTRKRN-------QQLDKDDPVAVALGQQIMDRLLAHPQFVSAALFNRYQGGETFGYHIDNAI-----------STPDGMIRTDLSATLFLSEPE-NYQGGELVI--------------------------------------------------QDTYGQQSIKLSAGSLVLYPSSSLHQVTPVLSGE---RTAAF.............................................................. 184
30 -17.5003w20_A mol:protein length:273 Putative uncharacterized protein  ali model follow..  8  10MRFGTAARAEHMTIAAAIHAADEADAIVMDIVPDGERDAWWDDEGFSLGQLQREQGDKLVSKAAEYFGIACRVNDGLRTTRFVRLFSDTIGHDYEVEFLLATRRVYEPFEAPFNFAPHCDDVSYGRDTVNW------PLKRSFPRQLGGFLTIQG-ADNDAGMVM-------------------------DNRPESRAALDEMHAEYRETGAIAALERAAKIMLKPQPGQLTLFQSKNLHAIERCTST----RRTMGLIHTEDGWRMFD.................................................. 273
31 -15.1004iw3_A mol:protein length:229 Putative uncharacterized protein  ali model follow..  10  16..ASHISPEHPMLAAVVDDLATHGWSQQAHFLPADLVRALAAECRRRDAEGELNPAGVGRGATQEVRETIRGDQIQWIDPGQAEACDQYLAAMDQLRLAI-FECHFALYPPGAFYRRHLD-----------------RFRDDDRRMVSAVLYLNEQPHDGGQLRMFL-------------------------------------------------ADGVEHDVEPVAGCLVVFLSEVPHEVLPAGRE----RLSLTGWFRRRGNDPF................................................... 223
32 -14.9006ey1_A mol:protein length:257 HIF prolyl hydroxylase  ali model follow..  10  33.KTWQLQKNERLSNMVVNQLNTNGFCIINNFLGSSCSTEVLQQVLNLYQSGVFSNGQLARNVSVNRIRGDKIAWIGGDESSCVDSLISRCNGRLGNYMITGRTMVACYPGSGLGYIRHID------------------NPNRDGRCVTVLYYLNPNSQDCGGQLWLYPN-----------------------------------------------NENKVVKIDPIFDRLLLFDRRNPHEVKPAYAM----RYAITLWYFDEKERALSSQNGT............................................. 251
33 -14.9002g19_A mol:protein length:244 Egl nine homolog 1  ali model follow..  10  4GQTKPLPALKLALEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIRHCNGKLACYPGNGTGYVRHVD------------------NPNGDGRCVTCIYYLNKDAKVSGGILRIFPE-----------------------------------------------GKAQFADIEPKFDRLLFFDRRNPHEVQPAYAT----RYAITVWYFDAD....................................................... 215
34 -14.5004kbz_A mol:protein length:238 Egl nine homolog 1  ali model follow..  9  2SQTKPLPALKLALEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALLVSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSDDLIRHCNGKLGSYKI--KAMVACYPGNGTGYVRHVDNP------------------NGDGRCVTCIYYLNKDAKVSGGILRIFPE-----------------------------------------------GKAQFADIEPKFDRLLFFDRRNPHEVQPAYAT----RYAITVWYFDAD....................................................... 213
35 -14.4005v1b_A mol:protein length:240 Egl nine homolog 2  ali model follow..  8  5.EALPSAPERLALDYIVPCMRYYGICVVDSFLGAALGGRVLAEVEALLVSQRAIPPRSIRGDQIAWVEGHEPGCRSIGALMAHDAVIRHCAGRLGSYKI--KAMVACYPGNGLGYVRHVD------------------NPHGDGRCITCIYYLNQDVKVHGGLLQIFPE-----------------------------------------------GRPVVANIEPLFDRLLIFDRRNPHEVKPAYAT----RYAITVWYFDADER..................................................... 217
36 -14.2002hbt_A mol:protein length:247 Egl nine homolog 1  ali model follow..  9  1...MALPALKLALEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALLVSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSDDLIRHCNGKLGSYKI--KAMVACYPGNGTGYVRHVDNP------------------NGDGRCVTCIYYLNKDAKVSGGILRIFPE-----------------------------------------------GKAQFADIEPKFDRLLFFDRRNPHEVQPAYAT----RYAITVWYFDAD....................................................... 209
37 -14.2002y33_A mol:protein length:252 EGL NINE HOMOLOG 1  ali model follow..  10  10.QTKPLPALKLALEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIRHCNGKLACYPGNGTGYVRHVDNP------------------NGDGRCVTCIYYLNKDAKVSGGILRIFPE-----------------------------------------------GKAQFADIEPKFDRLLFFDRRNPHEVQPAYAT----RYAITVWYFDAD....................................................... 220
38 -14.0005l9v_A mol:protein length:252 Egl nine homolog 1  ali model follow..  9  10.QTKPLPALKLALEYIVPAMNKHGICVVDDFLGKETGQQIGDEVRALLVSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSDDLICHCNGKLGSYKI--KAMVACYPGNGTGYVRHVD------------------NCNGDGRCVTCIYYLNKDAKVSGGILRIFPE-----------------------------------------------GKAQFADIEPKFDRLLFFDRRNPHEVQPAYAT----RYAITVWYFDADE...................................................... 221
39 -13.6005lbc_A mol:protein length:252 Egl nine homolog 1  ali model follow..  11  10.QTKPLPALKLALEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLVLHCNGKLACYPGNGTGYVRHVD------------------NPNGDGRCVTCIYYLNKDAKVSGGILRIFPE-----------------------------------------------GKAQFADIEPKFDRLLFFDRRNPHEVQPAYAT----RYAITVWYFDAD....................................................... 220
40 -13.5006ax6_A mol:protein length:235 Procollagen lysyl hydroxylase and glycosyltransferase  ali model follow..  11  24PTRKEEWEKKYLHPEFLSHLQNF--VYSFPLFTPAFCKEVIEVMDKANLWSKGGDSYFDPRIGGVESYPTQDT------QLYEVGLDKQWHYVVFNYVAPFVRHLYYDMERQSELAPHHDSS-----------------------TYTLNIALNEYGKEAGGCEF---------------------------------------------------IRHKFIWQGQKVGYATIHAGKLYHRALPITSGK---RYILVS............................................................. 226
41 -13.0002rg4_A mol:protein length:216 Uncharacterized protein  ali model follow..  8  1...........MSLAQIKSLFATRLYHAP--LSEHGPALDPAEFAASCYSIAED-DDAGQEWCEREGYPGYTSYASLTDLPWRFPIFADLVKSLDAHVAAFAEDLEFELDGKA-------------------------------RLEDIWINILPEGGVHG-SHIHPHSVISGTTYVAMPEGTSALKLEDPRLPFM--------MAAPTRRKGAREELRTFRSVAPKVGDVLLWESWLRHEVPMNMAEED--RISVSFNYAWGEG...................................................... 210
42 -12.6003bvc_A mol:protein length:212 Uncharacterized protein Ism_01780  ali model follow..  8  15...............................LSDHGPAIDAEEMESSCYAIAED-DEAGQGWCEENGYPGYTSYASLTDLPWRFPIFADLVKSLDAHVAAFAEDLEFDLDGRA-------------------------------ELEDLWINILPEGGSH--SHIHPHSVISGTTYVSMPGGTSALKLEDPR--------HAMMMAAPARRKTARDELRQFIYVTPAVGDVLLWESWLRHEVPMNMSEDD--RISVSFNYRWAE....................................................... 205
43 -12.2002r6s_A mol:protein length:325 Gab protein  ali model follow..  10  1MNALTAVHNNAVDSGTPSAQSPRLLEL----FTEQTTKQFLEQVAEWPVQALEYKSLRFRVGKILDDLCANQLQPLLLKTLLN-KLATAVAHLIGRSNF-YYARFVVKNVDNSVMELHNDGTYVEEITD-----------------YVLMMKIDEQNMQGGNSLLLPSKNVSKDVFHPVFDVDQQGRPVMRYIDQFVQPKDFEEGVWLSELSDAIETSKGILSVPVPVGKFLLINNFWLHGRDRFTPHPDLRRELMRQR............................................................ 311
44 -11.7001jr7_A mol:protein length:311 HYPOTHETICAL 37.4 KDA PROTEIN IN ILEY-GABD INTERGENIC REGION  ali model follow..  8  57LDDLCANQLQPLLLKTLLNRAEGALLINAVGKQADEMVKLATAVAHLIGRSNFDAMSGQYYARFVVKNVDNSDSYLRQP--------------------------------HRVMELHNDGTYVEEITD-----------------YVLMMKIDEQNMQGGNSLLLPSKNVSKDVFHPVFDVDQQGRPVMRYIDQFVQPKDFEEGVWLSELSDAIETSKGILSVPVPVGKFLLINNFWLHGRDRFTPHPDLRRELMRQRGYFAYAS..................................................... 304
45 -11.5006daw_A mol:protein length:342 Non-heme iron hydroxylase  ali model follow..  6  46LSLVAHRMPPRLIRRRFRTAEEASCLVVRGLVDDRRLGPTPLDWREPPREPESEVHE---------------------------VFLTLATAHLGDIFGWSTLQ--QSGHGTVELAWHTEDGFHPYRCDYLLLLGLRNHDAVPTGVAGV-IRPDTEHLRHARTLAADRGSPHAVQLMQDEPEPCAVLFGHPDRPYLRIDPAFMSPLPGDPEAAAALEQRNLTDVVLSPGDLLVIDNRVVHGRAAFKARFDGTDRWLKKAVVTRD....................................................... 325
46 -11.4001drt_A mol:protein length:324 CLAVAMINATE SYNTHASE 1  ali model follow..  10  35AHTAAASLPGALATTFNAEGSEDGHLLLRGL----PVEADADLPTTPSSTPAPEDRSLLTMEAMLGLVGRRLGLHTGYRELRSGTVYHDVYPSPGAHHLSSET-------SETLLEFHTEMAYHRLQPN-----------------YVMLACSRADHERTAATLVASVRKALPLLDERTRARLLDRRMPCCVDVAFRGGVDDPGAIAQVKPLYGDADDEVTEAVYLEPGDLLIVDNRTTHARTPFSPRWDGKDRWLHRVYIRTDRN--------GQLSGGERAGDVVAFTPRG.......................... 324
47 -11.3002og5_A mol:protein length:357 Putative oxygenase  ali model follow..  13  77.............RRDLAGFRRDGAIVLRGLPVDSM------GLPPTPRVNGSVQREASLGAAVLLMTACGLGDPGAFLPEKNGALVQDVVPVPGME--------FQGNAGSTLLTFHNENAFHEHRPD-LLCLRADPTGRAGLRTACVRRVLPLLSDST--VDALWAPEFRTAPPPSFQLSGPEEAPAPVLLGDRSDPDLRVDLAATEPVTERAAEDATAVTHRLLPGELAIVNRVTVHGRTEFTPRYDGTDRWLQRTFVLTD....................................................... 328
48 -11.2005c5t_A mol:protein length:228 Prolyl 4-hydroxylase  ali model follow..  12  9..VPRGSHMEGFETSDRPGVCDGKYYEKDGFLSDIECDVLINAAIKKGLIKSEVGGATENDPIKLDPKSRNSEQTWFMPGEHEDKIQKKTREFLN-DKYNFEDVQVARYKPGQYYYHHYDG------------DDCDDACPKDQRLATLMVYLKAPEEGGGGETDFPTLK---------------------------------------------------TKIKPKKGTSIFFYKETLHAGLPVKSGEK..................................................................... 211
49 -10.9006alm_A mol:protein length:394 Alpha-ketoglutarate-dependent L-arginine hydroxylase  ali model follow..  6  90APVIAHELPRRLRTARARLDAWPHALVVRGNVDDAALGSTPVHWRTARTPGSRPL----------------------------SFLLMLYAGLLGDVFGWATQQ-LVSSSSRQELGWHTEDAFSPYRADYVGLLSLRNPDGVATTLAGVPLDLDERTLDPEPVAILTGHRAAPHLRVDGDFSAPAEGDEEAAAALGT----------------RKLIDASLYELVLDQGDVAFIDNRAVHGRRAFQPRYDGRDRWLKRINITRDL...................................................... 371
50 -10.9004m23_A mol:protein length:364 L-arginine beta-hydroxylase  ali model follow..  8  59LPRLAARLPEGVQDREFKLADRHGHTVIRGHFDQRRIGPTPDHWRG-----RVRPGPEFPEELLLMLYSALLGEPFGWATQQDGHLVHDIFPIRSHE------NDQLGMGSKQLLTWHTEDAFHPYRSDYLILGALRNPDHVPTTVGELDLSIQRMIDERPLGPLLYGSRLDPYMRLDPYFTSVPQDDTDARRAYDA----------------FKVVDSGMREVVADQGDVLFIDNRAVHGRLPFQARYDGTDRWLKRVCVTSD....................................................... 341
51 -10.8005iax_A mol:protein length:226 Procollagen-Proline Dioxygenase  ali model follow..  13  17FDHKGNVIKTEDREIQIISKFEEPLIVVGNVLSDEECDELIELSKSKLARSK--VGSSRDVNDIRTSSGAFLDDNELTA-----KIEKRISSIMNVPASHGEGLHILNYEVDQQYKAHYDY------------FAEHSRSAANNRISTLVMYLNDV--EEGGETFFPKLN---------------------------------------------------LSVHPRKGMAVYFNELTLHGGAPVTKGEK..................................................................... 204
52 -10.6004nj4_A mol:protein length:250 RNA demethylase ALKBH5  ali model follow..  6  1MSSGVDLGTENLYFQSMPERSDKSGIRQMRLFSQDECAKIEARIDEVVSRAEKGLYNEHTVDRAPLRNKYFFGEGYTYGAQLHQLVIQKLVEHRVIPEGFVNSAVINDYQPGGCIVSHVD---------------------------------PIHIFERPIVSVSFFSDSALCFGCKFQFKPIR-------------------------------VSEPVLSLPVRRGSVTVLSGYA-HCIRPQDIKE--RRAVIILRKTRLDA...................................................... 241
53 -10.1003mgu_A mol:protein length:644 PKHD-type hydroxylase TPA1  ali model follow..  10  31.......NPKIWDKTFQDGLKKENWGTIHELVNDDLLRAVRKEIETEIHRVNQSGDLANLSGLDWDDLSRLPNLFKLRQILYSKQYRDFFGYVTKAGKLSGSKT-INTYTKGCHLLTHDDV------------------GSRRISFILYLPDPDRKSHYGGGLRLFPSILP------------------------------------------NVPHSDPSAKLVPQFNQIAFFPGFSFHDVEEVKVDKH--RLSIQGWYHIPQ....................................................... 249
54 -10.1004lt5_A mol:protein length:327 Naegleria Tet-like dioxygenase  ali model follow..  11  95.............RTAYFVCDHDGSVELPNVLPKELVEEFTEKFESI-DNSMPFNYVTADLSQELGQYLSEIVNPQINYYI--SKLLTCVSSRTINYLVSLNDSYYALNNCHRIRKPHKDNL---------------------DITPSSLFYFGNFQNTEGYLEL--------------------------------------------------------CKVFVQPGDVLFFKGNEYHVVANITSGW---RIGLVY-FAHKGS...................................................... 300
55 -9.9604qkb_A mol:protein length:200 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial  ali model follow..  11  6............SGPSVLSRLQDAAVVRPGFLSTAEEETLSRELEPELRRRRYEYDHWDAAIHGFRETEKSRWSEASMAI-----MRRVQAAAFGPGQTLLSSVHVLDLEARGYIKPHVD-------------------SIKFCGATIAGLSL--------------LSPSVMRLVHTQ-------------------------------------EPGEWLELLLEPGSLYILRGSASHEILRDEESPRGRRISVICRSLPEGM...................................................... 194
56 -9.8903eat_X mol:protein length:293 Pyoverdine biosynthesis protein PvcB  ali model follow..  7  3MNAYLSDQPVRLSPLRDEQGNQPGLLLEPGRPGMHVGELPAQWLKGLARSHHLLLLRG-------------------FAAFADAESLTRYCHDFGEVMLWPFGAVLELVEANNYVPLHWDGMYLETVPEFQVFHCVDAPGDSDSSTPAALQLADSSELEL--WRRASGRYQFPILRFCEPPVEGDASFINPSEFHYDGIAPEQRGELLASLRRCLYHPQAHYAHRWRSDDLVIADNLLLHGREAFAHRAPRHLRRVHIH............................................................ 280
57 -9.7704nhk_A mol:protein length:647 PKHD-type hydroxylase TPA1  ali model follow..  9  24...KGMFNPKIWDKTFQDGLKKENWGTIHELVNDDLLRAVRKEIETEIHRVNQSGDLANLSGLDWDDLSRLPNLFKLRQILYSKQYRDFFGYVTKAGKLSGSKTDMNTYTKGCHLLTHDDV------------------GSRRISFILYLPDPDRKSHYGGGLRLFPSILP------------------------------------------NVPHSDPSAKLVPQFNQIAFFPGFSFHDVEEVKVDKH--RLSIQGWYHIPQ....................................................... 246
58 -9.7003kt1_A mol:protein length:633 PKHD-type hydroxylase TPA1  ali model follow..  10  12.......NPKIWDKTFQDGLKKENWGTIHELVNDDLLRAVRKEIETEIHRVNQSGDLANLSGLDWDDLSRLPNLFKLRQILYSKQYRDFFGYVTKAGKLSGSKT-INTYTKGCHLLTHDDV------------------GSRRISFILYLPDPDRKSHYGGGLRLFPSILP------------------------------------------NVPHSDPSAKLVPQFNQIAFFPGFSFHDVEEVKVDKH--RLSIQGWYHIPQ....................................................... 230
59 -9.6905hsx_A mol:protein length:323 Putative alpha-ketoglutarate-dependent taurine dioxygenase  ali model follow..  10  3MSAAAVQEIQSIEVTPLSA-EIHG-VDLTQKLEARQIAEIRAALLKVVFFREQFLTHEQHVAFSAQFGELTLGHPVFGHVEGHPEVYSISKY---------ATRFEGQTLQRPWTGWHTDVTAAVNPPWASILRPPYGGDTQWTNLVAAYQKLSAPLRS---VDGLRGIHRHPLVRVHPETGERALYVSPSFLKSIVGVSPRESQVLLELLWEHVTRPEFTVRFKWQAGSVAFWDNRTAHLAPTDIFDLDFDRQLYRTTLVGD........................................................ 290
60 -9.6701vrb_A mol:protein length:342 Putative asparaginyl hydroxylase  ali model follow..  10  9.AVTESVLESIISPVTMSEFLEEYW--FTSIPGFEKVRTLENVLANPVMVVGDAVIEESEGITDRFLVSPAEALEWYEK-LFIPQVRRWIEKLLRLPAGTSSKAIVYAAKNGGGFKAHFD-------------------------------------AYTNLIFQIQGEKTWKLAKNENVSNP-------QHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPGTMLYLPRGLWHSTKSDQAT-----LALNITFGQPA....................................................... 249
61 -9.5601e5r_A mol:protein length:290 PROLINE OXIDASE  ali model follow..  9  12...................................DQTRLAPDLAYLAAVPTVEEEYDEFSNGFWKHVPLWNASGDSEDVEHVPYLKEIVTTVFDGTHL---QMARSRNLKNAIVIPHRDFV---------------ELDREVDRYFRTFMVL---EDSPLAFHSNEDT-----------------------------------------------------VIHMRPGEIWFLDAATVH-SAVNFSEIS--RQSLCVDFAFDG....................................................... 179
62 -9.5302jij_A mol:protein length:233 PROLYL-4 HYDROXYLASE  ali model follow..  11  10..........EEWRGEVVHLSWSPRAFLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVIS-KIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYD--YFHDPVNAGPEHGGQ-------RVVTMLMYLTTV--EEGGETVLPNAEQKVTGDGWSECAKRG------------------------------------LAVKPIKGDALMFDPASLHGSCPTLKGDK..................................................................... 211
63 -9.5005keu_A mol:protein length:323 Taurine dioxygenase  ali model follow..  11  3MSAAALQETPSIQVKPLSA-ELHG-VDLTRKLDPSEVAQIRAALLRVVFFREQFLTHEQHVAFSAQFGEPTLGHPVFGHVDGHPEVYSISKY---------ATRFEGQALLRPWTGWHTDVTAALNPPWASILRPPYGGDTQWTNLALAYEKLSAPLRA---VDGLRGVHRHPLVRVHPETGERVLYVSPSFLKSIVGVTPRESEALLELLWEHATRPEFTVRFKWEAGSVAFWDNRTAHLAPTDIFDLDFDRQLYRTTLVGD........................................................ 290
64 -9.3505cu1_A mol:protein length:212 DMSP lyase  ali model follow..  12  1...............................MSSGSMTQTDPAFQNLLAEFQALHAREPALAGFVALPDSLTPQPVTPVRIPPAALMESDPDLTTTAYAAIRDAF---IAAGAVAQWRLTY-------QGSRLGADFMDRFACYCLIGEGGPFASDSLAAYVVYMPAGLY-----FHQHPAEEIYFILAG----------------------EAEFLMEGHPPRRLGPGDHVFHPSGHPHATRTYDRP....................................................................... 182
65 -9.1504nhx_A mol:protein length:562 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 1  ali model follow..  8  53VAEAWSRRTPFSHEVIVMDMDPFLHCVIPNFIQSQDF---LEGLQKELMNLDFHEKYNDLYKFQQSDDLKKRREPHISTLILFEDFRSWLSDISKIDLESTIDMSCAKYEFTDALLCHDDEL--------------------EGRRIAFILYLVPDRSMGGTLDLYSIDEHFQ-------------------------------------------PKQIVKSLIPSWNKLVFFSPVSFHQ--SEVLSEEKSRLSISGWFHGPS....................................................... 255
66 -9.0602iuw_A mol:protein length:238 ALKYLATED REPAIR PROTEIN ALKB HOMOLOG 3  ali model follow..  9  13.SHMRVIDREGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYGELPYTYSRITMETLKNRIEENTGHTFNSLLCNLY--RNEKDSVDWHSD----------------DEPSLGRCPIIAS-LSF--------------GATRTFEMRKKPPPEENG-----------------------------DYTYVERVKIPLDHGTLLIMEGATQH-RVPKEYHSREPRVNLTFRTVYPD....................................................... 226
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.