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Query: 3h0g_A mol:protein length:1752 DNA-directed RNA polymerase II subunit rpb1, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSGIQFSPSSVPLRRVEEVQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGGLLDPRLGTIDRQFKCQTCGETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLKIDSSNPKFNDTQRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNPSANMGHGGCGAAQPTIRKDGLRLWGSWKRGKDESDLPEKRLLSPLEVHTIFTHISSEDLAHLGLNEQYARPDWMIITVLPVPPPSVRPSISVDGTSRGEDDLTHKLSDIIKANANVRRCEQEGAPAHIVSEYEQLLQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPGAKYIIRDTGERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLTRNAVMNIMLWVPDWDGILPPPVILKPKVLWTGKQILSLIIPKGINLIRDDDKQSLSNPTDSGMLIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEICKGFFNGIQRVVNYWLLHNGFSIGIGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMTLRESFEAKVSRILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVEYQVFDSLRLSTKQFEKKYRIDLMEDRSLSLYMENSIENDSSVQDLLDEEYTQLVADRELLCKFIFPKGDARWPLPVNVQRIIQNALQIFHLEAKKPTDLLPSDIINGLNELIAKLTIFRGSDRITRDVQNNATLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVVSPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLTIYLMPWIAANMDLAKNVQTQIEHTTLSTVTSATEIHYDPDPQDTVIEEDKDFVEAFFAIPDEEVEENLYKQSPWLLRLELDRAKMLDKKLSMSDVAGKIAESFERDLFTIWSEDNADKLIIRCRIIRDDDRKAEDDDNMIEEDVFLKTIEGHMLESISLRGVPNITRVYMMEHKIVRQIEDGTFERADEWVLETDGINLTEAMTVEGVDATRTYSNSFVEILQILGIEATRSALLKELRNVIEFDGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEKDDCKGISENIMLGQLAPMGTGAFDIYLDQDMLMNYSLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSLast
1 -337.0003h0g_A mol:protein length:1752 DNA-directed RNA polymerase II subunit rpb1  ali model  100  1MSGIQFSPSSVPLRRVEEVQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGGLLDPRLGTIDRQFKCQTCGETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLKIDSSNPKFNDTQRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNPSANMGHGGCGAAQPTIRKDGLRLWGSWKRGKDESDLPEKRLLSPLEVHTIFTHISSEDLAHLGLNEQYARPDWMIITVLPVPPPSVRPSISVDGTSRGEDDLTHKLSDIIKANANVRRCEQEGAPAHIVSEYEQLLQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPGAKYIIRDTGERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLTRNAVMNIMLWVPDWDGILPPPVILKPKVLWTGKQILSLIIPKGINLIRDDDKQSLSNPTDSGMLIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEICKGFFNGIQRVVNYWLLHNGFSIGIGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMTLRESFEAKVSRILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVEYQVFDSLRLSTKQFEKKYRIDLMEDRSLSLYMENSIENDSSVQDLLDEEYTQLVADRELLCKFIFPKGDARWPLPVNVQRIIQNALQIFHLEAKKPTDLLPSDIINGLNELIAKLTIFRGSDRITRDVQNNATLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVVSPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLTIYLMPWIAANMDLAKNVQTQIEHTTLSTVTSATEIHYDPDPQDTVIEEDKDFVEAFFAIPDEEVEENLYKQSPWLLRLELDRAKMLDKKLSMSDVAGKIAESFERDLFTIWSEDNADKLIIRCRIIRDDDRKAEDDDNMIEEDVFLKTIEGHMLESISLRGVPNITRVYMMEHKIVRQIEDGTFERADEWVLETDGINLTEAMTVEGVDATRTYSNSFVEILQILGIEATRSALLKELRNVIEFDGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEKDDCKGISENIMLGQLAPMGTGAFDIYLDQDMLMNYSLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1752
2 -314.0001i3q_A mol:protein length:1733 DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT  ali model follow..  63  1MVGQQY--SSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGG-----GNTQPTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREV-FVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRV---VRPKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVMIDEESLVKYMPEQKITEIEDGQ-------DGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFT--AYGGADYGEATSPF-GAYGEAPTSPGFGVSSPGFSPT------SPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENE 1730
3 -311.0005x4z_A mol:protein length:1743 DNA-directed RNA polymerase subunit  ali model follow..  66  1MS--QFPYSSAPLRSVKEVQFGLLSPEEIRAISVVKIEYPEIMDESRQRPREGGLNDPKLGSIDRNFKCQTCGEGMAECPGHFGHMELAKPVFHIGFIPKIKKVCECICMNCGKLLLDETNPTMAQAIRIRDPKKRFNAVWQLCKTKMVCEADAPVDEYSE--QKVVSRGGCGNTQPVVRKDGMKLWGTWKK-SGFSDRDAQPERKLLTPGEILNVFKHISPEDCFRLGFNEDYARPEWMIITVLPVPPPQVRPSIAMDETTQGQDDLTHKLSDILKANINVQKLEMDGSPQHIINEVEQLLQFHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPISIAKTLSYPETVTQYNIHRLTEYVRNGPNEHPGAKYVIRDNGDRIDLRYHKRAGDIVLQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFIEYEQVMNMLFWVPSWDGVVPQPAILKPKPLWTGKQLLSIAIPSGIHLQRTDGGNSLLSPKDNGMLIVDGKVMFGVVDKKTVGSGGGGLIHTVMREKGPKICAELFGNIQKVVNYWLLHNGFSIGIGDAIADASTMKEITHAISSAKEQVQEIIYKAQHNELELKPGMTLRESFEGEVSRTLNDARDSAGRSAEMNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQMVEGKRIAFGFADRSLPHFTKDDFSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFLYGEDGLDGTQVERQTIDTIPGSDKAFHKRYYVDLMDEKNDVIEYAADILGDVELQKELNSEYEQLVSDRKFLREIVFVNGDHNWPLPVNLRRIIQNAQQIFHLDRAKASDLTIPEIIHGVRDLCKKLFVLRGENELIKEAQQNATSLFQCLVRARLATRRILEEFRLNRDAFEWVLGTIEAQFQRSLVHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLDREIALDIEKAKVIQSSIEYTTLKNVTSATEIYYDPDPTSTVIEEDFDTVEAYFSIPDEKVEETIDKQSPWLLRLELDRARMLDKQLTMNQVADKISEVFSDDLFVMWSEDNADKLIIRCRVIRDPKAMDEELEAEED--QMLKRIEAHMLDLIALRGIPGISKVYMVKHKVSVPDESGEYKNEELWALETDGINLAEVMAVPGVDSSRTYSNSFVEILSVLGIEATRSSLYKEILNVIAFDGSYVNYRHMALLVDVMTSRGYLMAITRHGINRADTGALMRCSFEETVEILFEAGAAAELDDCRGVSENVMLGQLAPMGTGAFDVMIDEKLLTSLPADYAPTMPLFKGKATQGSATPYDNNAQYDDEFNHDDVADVMFSPMAETGSGDDRSGGLTEYAGIQSPYQP---------TSPGLSATSPGFAPTSPGFAPTSPYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPASPQYSPSRHSPNGESKE 1741
4 -286.0006gml_A mol:protein length:1973 DNA-directed RNA polymerase subunit  ali model follow..  56  3GGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPRLTHVYDLCKGKNICEGGEEMDNKFGVEQPETKEKGHGGCGRYQPRIRRSGLELYAEWK-HVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRVI-FPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVAR----ISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSPSYSPTSPSYSPTSPSYSSPSYSPTSPNYSPTSPNYTPTSPYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPGYSPTSPTYSLTSPAISPDDSD 1970
5 -245.0005fj8_A mol:protein length:1460 DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1  ali model follow..  31  1...MKEVVVSETPKRIKGLEFSALSAADIVAQSEVEVSTRDLFDLKDRAPKANGALDPKMGVSSSSLECATCHGNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSETDKRQFLHELRRPGVDNLRRMGILKKILDQCKKQRRCLHCGALNGVVKKFRWVGKKSAPEKDIWVGEWKEVLAHNPELERYVKRCMDDLNPLKTLNLFKQIKSADCELLGIDAPSGRPETYIWRYLPAPPVCIRPSVMMQDSPSNEDDLTVKLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSKVKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNEDARRNLRDRMKLAKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLSMMSDGHFDIPPPAIMKPYYLWTGKQVFSLLIKPNHNSPKSKSLPNEMSQNDGFVIIRGSQILSGVMDKSVLGDGKHSVFYTILRDYGPQEAANAMNRMAKLCARFLGNRGFSIGINDVTPADDLKQKKEELVEIAYHKCDELITLFNKGELETQPGCNEEQTLEAKIGGLLSKVREEVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSANGIVQFTYGGDGLDPLEMEGNAQPVNFNRSWDHAYNITFNNQDKGLLPYAIMETANEILGPLEERLVRYDNSGCLVK--------------------REDLNKAEYVDQYDAERDFYHSLREYINGKATALANLRKSRGMLGLLEPPAKELQGIDPDETVPDNVKTSVSQLYRISEKSVRKFLEIALFKYRKARLEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINAVLVNDN--DERAARVVKGRVEKTLLSDVAFYVQDVYKDNLSFIQVRIDLGTIDKLQLELTIEDIAVAITRASKLKIQASDVNIIGKDRIAINVFPEGYKAKSISTSAKEPSENDV---------------------------FYRMQQLRRALPDVVVKGLPDISRAVINI------------RDDGKRELLVEGYGLRDVMCTDGVIGSRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGSFKVVKGTNISEKDLVPKRCLFESLSNEAALKAN................................................................................................................................................................................................................................................................................. 1460
6 -218.0004c2m_A mol:protein length:1664 DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA190  ali model follow..  26  1.....MDISKPVGSEITSVDFGILTAKEIRNLSAKQITNPTVLDNLG-HPVSGGLYDLALGAFLRN-LCSTCGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACKLRLLQYGLIDESYKLDEITLGSLNSSMYTDDEAIEKKLLSRGKCDNCGMFSPKFRKDGFTKIFETGRNPTTRPKTGSTYILSTEVKNILDTVFRKEQCVLQYSRKLVKADSFFMDVLVVPPTRFRLPSKL-GEEVHENSQNQLLSKVLTTSLLIRDLNDDLSKLSRLMNAFVTIQNDVNAFIDSTKAQGR---TSGKVPIPGVKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQIQNEDGSLVSLIGMSVEQRKALANNKKVYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPNKTLRLHYANTGAYNADFDGDEMNMHFPQNENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYGCTRSKIVTLPPTIFKPYPLWTGKQIITTVLLNVTPPNKIKNEYWGKGSLENEVLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKVLSVLGRLFTNYITATAFTCGMDDLRLTAEGNKWRTDILKTSVDTGREAAAEVQEILRDNNKSGILDAVTSSKVNAITSQVVSKCVPDGTMKKFPCNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMYGGDAIDITKESHMTQEFCLDNYYALLKKYNPSALIEHLDVESALKYSKKTLKYRKKHSKEPHYKQSVKYDPVLAKYNPAKYLGSVSENFQDKLESFLDKNSKLFKSSDGVNEKKFRALM-----------------------------------------------------------QLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVTASAAIKTPQMTLPIWN--DVSDEQADTFCKSISKVLLSEVIDKVIVTETTGTSNTAGEPDEDEIETMREAEKSSDEEGIDSDKESDSDSEDEDVDMNEQINKSIVEANNNMNKVQRDRQSAIISHHRFITKYNFDDESGKWCEFKLELAADTEKLLMVNIVEEICRKSIIRQIPHIDRCVHPE------------PENGKRVLVTEGVNFQAMWDQEAFDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQGM-ETSTSSFMKMSYETTCQFLTKAVLDNEREQLDSPSARIVVGKLNNVGTGSFDVLAKVPNAA....................................................................................................................................................................................................................................................................................................... 1664
7 -210.0004jkr_D mol:protein length:1416 DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA`  ali model follow..  18  1MKDLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECEKCGVEVTQTKERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALE---------EFGDEFDAKMGAEAIQALLKSMDLEQ-------------ECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAV-----------------------VWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAI-------LWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEIISEAEAEVAEIQEQFQSGLVTADIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSII--------------------ETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAA----------------------AESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLE-----------------------------------------------------------------DGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMTYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLAELLNAGLGGSDNELE.................................................................................................................................................................................................................................................................... 1409
8 -189.0006c04_D mol:protein length:1326 DNA-directed RNA polymerase subunit beta`  ali model follow..  19  1.......GAMLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWECERCGVEVTRAKVRMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKDLEKIIYFAAYVITSVDEEMRHNSTFTKLAPKQLIVDENLYRELVDRYGEYFTGAMGAESIQKLIENFDIDAEA--------------ESLRDVIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDLGAPEIIVNNEKRMLQESVDALFDNGRRGRP-VTGPGNRPLKSLSDLLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDL-------NHAQNIKSAKRMVERQR----------------PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQMAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQPASGDHPETGSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAEDAWMAETTLGRVMFNELLPLGYPFVNKQMHKVQAAIINDLAERYPMIVVAQTVDKLKDAGFYWATRSGVTVSMADVLVPPR----KKEILDHYEERADKVEKQFQRGALN-------HDERNEALVEIWKEATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFI--------------------PRPVKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVELAERAPDGTLIRDPYIETSAYARTLGTDAVD--------------------------------------------------------------------------------------------------------EAGNVIVERGQDLGDPEIDALLAAGITQVKVRSVLTCATSTGVCATCYSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVGE-DITGGLPRVQELFEARVPRGKAPIADVTGRVR--LEDGERFYKITIVPDDGGEEVVYDKISKRQRLRVFKHEDGSERVLSDGDHVEVGQQ--------------------------------------------------------------------------------LMEGSADPHEVLRVQGPREVQIHLVRE--------------------------VQEVYRAQGVSIHDKHIEVIRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEPAAGRPVLMGITKASL--ATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSD................................................................................................................................................................................................................................................................ 1316
9 -188.0002gho_D mol:protein length:1233 DNA-directed RNA polymerase subunit beta`,DNA-directed RNA polymerase subunit beta`  ali model follow..  20  2............KKEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECERCGVEVTRSRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSATELEQVLYFNKYIVLDPKGAVLDGVPVEKRQLLT------------DEEYGGIDARMGAEAIQELLKELDLE--------------KLERELLEEMKHPSRARRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEAVDAVIDNGRRGSPVTNPGSERPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPFLLKKMEEKAF------APNVKAARRMLERQRDIKDEV--------------WDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKKGAGMAFALAAYERGEVALNAPIVVAGRETSVGRLKFVFANPDEALLAVAHGLLDLQDVVTVRVGDEKVAQELIQMDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTLSTTSGITIGIDDAVIPEE----KQRYLEEADRKLRQIEQAYEMGFLT-------DRERYDQVIQLWTETTEKVTQAVFKNFYPFNPLYVMAQSGARGNPQQIRQLCGMRGLMQKPSGETF--------------------EVPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVAHEIVVREA-DCGTTNYISVPLFQMDEVTRTLRLRKRS--------------------------------------------------------------------------------------------------DIESGLYGRVLAREVEALGRRLEEGRYLSLEDVHFLIKAAEAGEVREVPVRSPLTCQTRYGVCQKCYDLSMARPVSIGEAVGVVAAESIGEPGTQLTMRTFHTGGVAVGDITQGLPRVIELFEARRPKAKAVIS--------EIDGVVRIEEGEDRLSVFVESEGFSKEYKLPKDARLLVKDGDY----------------------------------------------------------------------------------------VEAGQPLTRGAIDPHQLLEAKGPEAVERYLVDEIQKVYRAQGVKLHD-------------------------KHIEIVVRQMLKYVEVTDPGDSRLLEGQVLEKWDVEALNERLIAEGKVPVAWKPLLMGVTKSALST--KSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQRTLKAIEEARKEAVEAKEKEAPRRPVRREQPGK...................................................................................................................................................................................................................................................................... 1231
10 -185.0005tw1_D mol:protein length:1317 DNA-directed RNA polymerase subunit beta`  ali model follow..  18  2..........LDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWECERCGVEVTRAKVRMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKDLEKIIYFAAYVITSVDDEMRHNELSTLEAEMAVEKKAVEDQRDADLEARAQKLEADLAELEAEGAKAPKQLIVDEVLYRELQDRYGEYFTGAMGAESIKKLIENFDKRLKVVAAFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDLGAPEIIVNNEKRMLQESVDALFDNGRRGRP-VTGPGNRPLKSLSDLLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDL-------NHAQNIKSAKRMVERQR----------------PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQMAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQAATKDAPEQGSSPAEAIMAMDRGALSVRAKIKVRLTELRFENGWKPGDAWTAETTLGRVMFNELLPKSYPFVNEQMHKVQARIINDLAERFPMIVVAQTVDKLKDAGFYWATRSGVTVSMADVLVPPQ----KQEILERHEAEADAIERKYQRGALN-------HTERNESLVKIWQDATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFI--------------------PRPIKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTLAERGPDGTLIRDAHVETSAFARTLATDAVD--------------------------------------------------------------------------------------------------------ANGNVIIERGHDLGDPAIDALLAAGITTVKVRSVLTCTSATGVCAMCYSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVTGGDIVGGLPRVQELFEARVPRNKAPIADVAGRVR--LEESDKFFKITIVPDDGGEEVVYDKLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQ--------------------------------------------------------------------------------LMEGAADPHEVLRVQGPREVQIHLVKE--------------------------VQEVYRAQGVSIHDKHIEVIVRMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGEPAAGRPVLMGITKASLAT--DSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPAGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYG................................................................................................................................................................................................................................................................... 1312
11 -182.0004qiw_A mol:protein length:906 DNA-directed RNA polymerase  ali model follow..  41  2.........QSMKKVIGSIEFGILSPQEIRKMSAAEITVPDTYDDDG-YPIEGGLMDKRLGVIDPGLRCETCGARAGECPGHFGHIELARPVIHVGFAKTIHRVLESTCRECGRIKLTDEEIEEYMQKFEVMGDRKGAVDKLIKEIHKKAKERMVCPHCGAPQFPIKFER------------------PTIYWELRKDEEGNEYKHRMMPSEVRDRLEKIPDKDLPLLGLHPEKSRPEWMVLTVLPVPPVTMRPSITLESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGVPLAVAMELTVPEKVTEFNYEKLKQRVLNGPEKYPGANYVIDPEGRRIRLMESRELIAEKLDIGWTVERHLEDGDVVLFNRQPSLHRMSIMAHRVRVMPYRTFRLNLPVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPLIAGIQDHISGGYLLTREGAYFTRYEVEQMLMFAGMDVELPEPDKYENGEPLWSGKTIFSLLLPDDLTIWYRNKLCDRKLAYDGFVYIQNGKLLSGAVDKKAYGREDGKLLDIIVREYGVERARQFLDQVTKLTIWVITHKGFTTAIDDEDLPQEAIDRIHEIIREAEEKVQRLIEAYKRGELEPLPGKTLEETLESKIMAVLAEARDNAGKVAERYLGMNNHAVIMAKTGARGKILNITQMAAMLGQQSIRGKRLYRGYRGRVLTHFKPGDLGARARGFVTNSYKSGLTPQEYFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTGIIVQFKYGEDGVDPMKSWQGKTVDVDRVIVRTLLK.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 900
12 -180.0002pmz_A mol:protein length:880 DNA-directed RNA polymerase subunit A  ali model follow..  42  1..........MSEKNIKGIKFGILSPDEIRKMSVTAIITPDVYD-EDGTPIEGSVMDPRLGVIEPGQKCPTCGNTLGNCPGHFGHIELVRPVIHVGLVKHIYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKKRWPSAARRLTEYVKKTAMKAQVCPHCNEKQY----------------------KIKLEKPYNFYEERKEGVAKLTPSDIRERLEKIPDSDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIESGIRAEDDLTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPEIIAKTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRPDGRRIDLRYDRKELASTLAPGYIIERHLIDGDIVLFNRQPSLHRISMMAHRVRVLKGLTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQILGV-ADVKIDLGEPAILAPREYYTGKQVISAFLPKDFNFHGPRLCKNEDCPHDSYVVIKNGILLEGVFDKKAIGNQQESILHWLIKEYSDEYGKWLMDNLFRVFIRFVELQGFTMRLEDVSLGDDVKKEIYNEIDRAKVEVDNLIQKYKNGELEPIPGRTLEESLENYILDTLDKLRSTAGDIASKYLDPFNFAYVMARTGARGSVLNITQMAAMLGQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKPTELFFHAAGGREGLVDTAVRTSQSGYMQRRLINALSDLRAEYDGTVRSLYGEVVQVAYGDDGVFPMYSAHGKTVDVNRIFERVVGWK................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 879
13 -179.0002waq_A mol:protein length:880 DNA-DIRECTED RNA POLYMERASE RPO1N SUBUNIT  ali model follow..  42  1..........MSEKNIKGIKFGILSPDEIRKMSVTAIITPDVYD-EDGTPIEGSVMDPRLGVIEPGQKCPTCGNTLGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKKRWPSAARRLTEYVKKTAMKAQVCPHCGEKQFKIKLEK----------------------PYNFYEERKEGVAKLTPSDIRERLEKVPESDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIESGIRAEDDLTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRPDGRRIDLRYDRKELASTLAPGYVVERHLTDGDVVLFNRQPSLHRISMMAHRVRVLKGLTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQILGV-ADVKIDLGEPAILAPREYYTGKQVVSAFLPKDFNFHGQRLCKNEDCPHDSYVVIKNGILLEGVFDKKAIGNQPESILHWLIKEYSDEYGKWLMDNLFRVFIRFVELQGFTMRLEDVSLGDDVKKEIYNEIDRAKVEVDNLIQKYKNGELEPIPGRTLEESLENYILDTLDKLRSTAGDIASKYLDPFNFAYVMARTGARGSVLNITQMAAMLGQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKPTELFFHAAGGREGLVDTAVRTSQSGYMQRRLINALSDLRAEYDGTVRSLYGEVIQVAYGDDGVFPMYSAHGKTVDVNRIFERVVGWKT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 880
14 -174.0001l9u_D mol:protein length:1524 RNA POLYMERASE, BETA-PRIME SUBUNIT  ali model follow..  17  2............KKEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECERCGVEVTRSIVRMGHIELATPAAHIWFVKDVPSKIGTLLDLSATELEQVLYFNKYIVLPVEKRQLLTDEEYRELRYGKQETYPLPAGVDALVKDGEEVVKGQELAPGVVSRMDGVALYRFPRRVRVDYLRKERAQELLKELDLEKLRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEAVDAVIDNGRRGSPVTNPGSERPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPFLLKKMEEKAFAPNV-------KAARRMLERQRDIKD-------------EVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKKGAGMAEALAAYERGEVALNAPIVVAGRETSVGRLKFVFANPDEALLAVAHGLLDLQDVVTVRYLGRRLETSPGQMDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTLSTTSGITIGIDDAVIPEE----KQRYLEEADRKLRQIEQAYEMGFLT-------DRERYDQVIQLWTETTEKVTQAVFKNFYPFNPLYVMAQSGARGNPQQIRQLCGMRGLMQKPSGET--------------------FEVPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVAHEIVV-READCGTTNYISVPLFQMDEVTRTLRLRKRS--------------------------------------------------------------------------------------------------DIESGLYGRVLAREVEALGRRLEEGRYLSLEDVHFLIKAAEAGEVREVPVRSPLTCQTRYGVCQKCYDLSMARPVSIGEAVGVVAAESIGEPGTQLTMRTFHTGGVAVGTITQGLPRVIELFEARRPKAKAVIS--------EIDGVVRIEEGEDRLSVFVESEGFSKEYKLPKDARLLVKDGDY----------------------------------------------------------------------------------------VEAGQPLTRGAIDPHQLLEAKGPEAVERYLVDEIQK---------------VYRAQGVKLHD----------KHIEIVVRQMLKYVEVTDPGDSRLLEGQVLEKWDVEALNERLIAEGKVPVAWKPLLMGVTKSALS--TKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQRTLKAIEEARKEAVEAKEKEAPRRPVRREQPGK...................................................................................................................................................................................................................................................................... 1522
15 -161.0004gzy_D mol:protein length:1534 DNA-directed RNA polymerase subunit beta`  ali model follow..  17  3.............KEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECACCGVEVTKSRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSATELEQVLYFSKYIVLPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAAIQQLLKELRKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPFLLKKMEEKGIAPNVK-------AARRMLERQRDIK-------------DEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKKGAGLEEALAAHERGEVALNAPIKVAGRETSVGRLKYVFANPDEARLETSPGRILFARIVAEAVEDEKVAWELIQLDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDAVIPEE----KKQYLEEADRKLLQIEQAYEMGFLTDRER-------YDQILQLWTETTEKVTQAVFKNFYPFNPLYVMAQSGARGNPQQIRQLCGLRGLMQKPSGET--------------------FEVPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVTHEIVVREADCGTTNYISVPLFQPDEVTRSLRLRKR----------------------------------------------------------------------------------------------------ADIEAGLYGRVLAREVEVLGVRLEEGRYSMDDVHLLIKAAEAGEIQEVPVRSPLTCQTRYGVCQKCYDLSMARPVSIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGAAITQGLPRVIELFEARRPKAKAVI--------SEIDGVVRIEETEEKLSVFVESEGFSKEYKLPKEARLLVKDG----------------------------------------------------------------------------------------DYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVEEIQK---------------VYRAQGVKLHD----------KHIEIVVRQMMKYVEVTDPGDSRLLEGQVLEKWDVEALNERLIAEGKTPVAWKPLLMGVTKSALS--TKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQKTLKAIEEARKEAVEAKERPAARRGVKREQPGKQA.................................................................................................................................................................................................................................................................... 1524
16 -66.7003qqc_A mol:protein length:436 DNA-directed RNA polymerase subunit b, DNA-directed RNA polymerase subunit a`, DNA-directed RNA polymerase subunit A``  ali model follow..  37  54MVIRPKLNLSEGGKVIGSIEFGILSPQEIRKMSAVEVTVPDTYDDDG-YPIEGGVMDKRMGVIDPGLRCETCGGRAGECPGHFGHIELARPVIHVGFAKTIYRILESTCRECGRIKLTDEEIEEYMKKIELARNRRSEFNEIIKEIHKKAKE----------------RMVCPHCGAPQYPIKFEKPTIYWEIR--KDEQGNEYRHRLMPTEVRDWLEKIPDKDLPLLGLDPEKSRPEWMVLTVLPVPPVTARPSITLETGIRAEDDLTHKLVDIIRINNRLKQNIEAGAPQLIIEDLWDLLQYHVTTYINNEAPGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGGAGSGAGSGSVLARAAFEIT-------VQHLFEAAEKGEVDNLNGVIENVLIGQK..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 430
17 -44.7004qiw_C mol:protein length:391 DNA-directed RNA polymerase subunit A``  ali model follow..  33  29.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................IEYNEKYKLKKDEIQAIIDETVREYQKALIEPGEAVGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTLGLPRIIEIVDARKNPSTPIMTVYLDEEHRYDRDKALEVARRIEGTTLENLAREETIDILNMEYVVEIDPERLEKAGLDMEKVVRKLTGSFKSAEFEAEGYTLVVRPKKVT-----------------------------------------------------KLSDLRKIAEKVKKHRLKGLSGVGKTIIRK-------------EGDEYVIYTEGSNFKQVLKVPGVDPTRTRTNNIWEIAEVLGIEAARNAIIDEIVSTMREQGLEVDVRHIMLVADMMTLDGVIRPIGRHGIVGEKASVLARAAFEITTQHLFAAAERGEVDPLNGVVENVLIGQPVPVGTGIVKLAMSLPLRPKRE.................................................................................................................................................................................................................................................................................................... 391
18 -44.1002waq_C mol:protein length:395 DNA-DIRECTED RNA POLYMERASE RPO1C SUBUNIT  ali model follow..  28  4........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VIDEKDKSYLEEKVKQASNILPQKIVEDLKNLISNKEVLVTRDEIDKIFDLAIKEYSEGLIAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELNVTLGLPRLIEIVDAKKVPSTPMMTIYLTDEYKHDKEKALEVARKLEYTKIENVVSSTSIDIASMSIILQLDNEMLKDKGVTVDDVKKAINRLKLGEFVIDESEGTTLNISFAN---------------------------------------------------IDSIAALFKLRDKILNTKIKGIKGIKRAIVQK-------------KGDEYIILTDGSNLSGVLSVKGVDIAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGLDVDMRHILLVADVMTRTGVVRQIGRHGVTGEKNSVLARAAFEVTVKHLLDAAARGDVEEFKGVVENIIIGHPIKLGTGMVELTMRPIL......................................................................................................................................................................................................................................................................................................... 394
19 -42.9003hkz_C mol:protein length:395 DNA-directed RNA polymerase subunit A``  ali model follow..  29  15...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EKVKQASNILPQKIVDDLKNLILNKEIIVTRDEIDKIFDLAIKEYSEGLIAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELNVTLGLPRLIEIVDAKKVPSTPMMTIYLTDEYKRDRDKALEVARKLEYTKIENVVSSTSIDIASMSIILQLDNEMLKDKGVTVDDVKKAIGRLKLGDFMIEESEDSTLNINFAN---------------------------------------------------IDSIAALFKLRDKILNTKIKGIKGIKRAIVQK-------------KGDEYIILTDGSNLSGVLSVKGVDVAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGLDVDIRHILLIADVMTRTGIVRQIGRHGVTGEKNSVLARAAFEVTVKHLLDAAARGDVEEFKGVVENIIIGHPIKLGTGMVELTMRPIL......................................................................................................................................................................................................................................................................................................... 394
20 -20.4005z56_v mol:protein length:464 Splicing factor 3A subunit 2  ali model follow..  15  15.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GVASSSESNRDRRERLRQLALETID-----INKDPYFMKNHLGSYE-LTLHNNEGSYLAHTQGKKQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVTKQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKMEKPPAPPSLPA-LPESLPPPPPGGLPLPPMPPTGPAPSGPPGPPQLPPPAPGVHPPAPVVHPPASGVHPPAPGVHPPAPGVHPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGHPPPSAGVHPQAPGVHPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSAPGVHPQPPGVHPSNPGVHPPTPM 441
21 -12.8005wtj_A mol:protein length:1397 CRISPR-associated endoribonuclease C2c2  ali model follow..  13  24..........................................................................................................................................................................................................................................................KVKVKRNYDGNKYILNINENNNKEKIDNNKFIRKYINYKKNDNILKEFTRKFHAG------------------------NILFKLKGKEGIIR---IENNDDFETEEVV-----LYIEAYGKSEKLALGITKKKIID----EAIRQGITKDDKK---IEIKRQENEEEIEIDIRDEYTNKTLNDCSIILRIIENDELIFKNINMSLYKI-------KIIENETEKV-----------FENRYYEEHLREKLLKDDKIDVILTNFMEI---KSNLEILGFVK------FYLNVGGDKKKSKNKKMLVEKILNINVDLTVEDIIKELEFWNITKRIEKVKKVNNEFLEKRRNRTYIK---SYVLLDKHE-IVKFFVENIKNNSIKEKIEKILAEFKIDELIKKLEKELKKGNCDTEIFGIFKKHYKVNFDSKKFSKKSDEEKELYKIIYRYLKGRIEKILVNEQKVRLKKMEKIEIEKILNES---LSEKILKRVKQYTLEHIMYLGKLR-TTVNTDDFSRLHAKEELDLELIT--FSRENINNDENIDFFGGDR--ILNSKIKIIRDLDFI----DNKNNITNNFIRTNERNRILHAISKDLQGTQDDYN--------KVINIIQNLKISDEEVSKALNLDVVFKDKKNIITKINDIKISEENNN...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 665
22 -12.6005ife_C mol:protein length:1304 Splicing factor 3B subunit 1  ali model follow..  11  1...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDST--YYDQEIYGGSDSRFAGYVTSI-KKPGYHAPVALLNDIPQSTEQDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMSTPVLTPKTPIGTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPSDEELDAMFPEGYKVLPPPAGYVPIRTPARKLTATPTPL 438
23 -12.0005w3n_A mol:protein length:241 RNA-binding protein FUS  ali model follow..  15  2.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SYYDYDIPTTENLYFQGAMDPASNDYTQQATQSYGAYPTQPGQGYSQQSSQPYGQQSYSGYSQSTDTSGYGQSSYSSYGQSQNTGYGTQSTPQGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQQSYGQQQSYNPPQGQQNQYNSSSGGGGGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRG....... 235
24 -11.5004ai6_A mol:protein length:2695 GLUTATHIONE S-TRANSFERASE CLASS-MU 26 KDA ISOZYME, DYNEIN HEAVY CHAIN CYTOPLASMIC  ali model follow..  8  207...................................................................................................................................................................ATFGGGDHPPKSDEFVIEKSLNRIKKFWKEAQYEVIEHSSGLKLVREWD--VLEQACKEDLEELVSMKASEVQFYWLDLYGILGENLDIQNFLPLETSKFKTSEYKMITTRAFQLDTTIEVIHIPNFDTTLTIDSLKMIKSSLSTFLERQRRQFPRFYFLGNDDLLKIIGSGKHHD-QVSKFMKGEVLNLNEKIELKDSIQAQLNILDTEIKLSVFTQFRDCLGQIKTELVEKCLQTNQFSKYWKEVDMKIKGLLDKLNKSSDNVKKKIEA--LLVEYLHFNNVILKNCSTKAKVQKFYQKNDTLDDLNSVFISQSGYLQYKFEYIGIPERIYTPLLLIGKTETVVVFNCDDSFDYQVLSRLLVGITQDSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNP---YNGRS-----LPENLKKSFREF---SMKSPQSGTIAEMILQIMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFLRTLKGV----LRNCSPLIS-EKTVVESLKRVILPSLGDTDELVFKDELSKIFDSAGTPLNSKAIVQCLKDAGQRSGFSMSEEFLKKCMQMQKTQQALILVGKAGC-GKTIDTKVLTKLYGSMLKATLEWRDGLFTSILRRVNDDITGTFKNSDLDPEYVEAMNSV------------LDDNKILTLPNG--ERRILFETDNLDHTTPATITRCGLLWFS................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 1072
25 -11.5002mk0_A mol:protein length:120 HEP200 protein  ali model follow..  24  1...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SYYTMMPSEPSSQPSCGEVIEECPIDACFLPKSDSARPPDCTAVGRPDCNLPFPNNICPSCCPFCSPDNPMTPSPDGSPPNCSPTLPSPSPSAVT-VPLTPTMLPS-PS 114
26 -11.2005zz8_t mol:protein length:3122 UL36  ali model follow..  13  807..........................................................................................................................................................................................................................QASDSHDCRFHVASAAVVPMVQLLESLPAPPPPL-----------ATSPQAILLRDLLQRGQTL--------------DAPEDLAAWLSVLTDAATQGL------ERKPLEELARSIHGQQARRSSGLLAQQLDSDAAFVPATGPAPYVDGGGLS---------PE-ATRMAEDALRQAAKMTAELAPEARSRLRERAHALELNDARERAKVAHDAREKFLHKLQG-DFVGLKACP-----AVLATLRASLPAGWTDLADAVTAALRADLWG-EALEH-PTPDTATALA-AFVVVLKTLFADAPETPVL--VQFFSDHAPTIAKA---------VSNAINAGSAAVATASPAATVDAAVRAHGALADAVSALGAAARDPASPLSFLAALADSAYVKATRLALGAIDETTLGSAAADLVHAALIDAAARATTAARESLAGHEAGFLHAEG-TAG--DHSPSGRALQELGKVIGATRRRADELEAAVADAKMAAQRARGSSERWAAGVEAALDRVENRAEFDVVE--------RLQALAGTHGYNPRAEQALAANAEAVTLALDTAFAFNPYTLPPLAASAAFHAAAETYADMFRVDAEPLEGLLEMAQAGDGFIDAVGRLADDGYVHRALGGVPLDLAAAAESAARNDPEATAELV-SEDALVACAAALERVDQSPVKNTAYAEYVAFVTRQDTAETKDAV------VRAKQQRAEATERVMAGLREALAARERRAQIEAEGLANLKTMLKVVAVPATVAKTLDQARSVAEIADQVEVLLDQTEKTRELDVPAVI.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1680
27 -11.1004rh7_A mol:protein length:3450 Green fluorescent protein/Cytoplasmic dynein 2 heavy chain 1  ali model follow..  12  494...............LEPIFGRGALPKEQTRFNRVDEDFRSIMTDIKKDNTHAGIRNSLLTILDQLQRCQ---------RSLNEFLEEKRSAFPRFYFIGDDDLLEILGQSTNPSVIQSHLKKLFAGINSVCFDEKSKHITAMKSLEGEVVPFKNKVPLSNNVETWLNDLA-LEMKKTLEQLLKECVTTGRSSQGAVDPSLFPSQILCLAEQIKDVENAIKDHSLHQIETQLVNKLEQYTNIDTSS-------EDPGNTESGILELKLKALILDIIHNIDVVKQLNQIQVHTTEDWAWKKQLRF----YMKSD---------------HTCCVQMVDSEFQYTYEYQGN----ASKLVYTP-----TDKCYLTLTQAMKMGL-----------------GGNPYGPAGT------GKTESVKALGGLLGRQVGIDVKSMGRIFVG----FNR--EESVLSAVSMQIQTIQGKEVEVNSITMNPAGKGYGG---RQKLPDNLKQLFRPVAMSHPDNELIAESEGFKDAKVLSRKLVAIFNLSREL--LTPQQHYD-----------------------WGLRALKTVLRGSGNLLRQLNKSGTTQNANESHIVVQDCTRFDALIKDVFPGDELSAALKQVFEEANYEIIPNQIKKALELYEQLCQRMGVVI----VGPSGAGKSTLWRMLRAALCKTGKVVKQYT------NPKAMPRYQLLGHIDMDTREWSDGVLTNSARQVVREPQ---IICDGSLNSVLDDNRLLTM-----PSGERIQFGPNVNFV--FETHDLSCASPATIS---RMGM----FLSDEETDLNSLIKSWLRNQPENWIGDYFEKALQWVLKQNDYVVETSLVGTVM................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 1315
28 -11.1004dt5_A mol:protein length:143 Antifreeze protein  ali model follow..  9  2................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................YSCRAVGVDGRAVTDIQGTCHAKATGAGAMASGTSEPGSTSTATATGRGATARSTSTGRGTATTTATGTASATSNAIGQGTATTTATGSAGGRATGSATTSSSASQPTQTQTITGPGFQTAKSFARNTATTTVTAS 137
29 -10.9005fur_J mol:protein length:677 TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6  ali model follow..  13  281........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................YLMRMVKALMDNPTLYLEKYVHELIPAVMT--------NHWALRDFAARLVAQIHFSTTTNNIQSRITKTFTKSWVDEKTPWRYGSIAELGHDVIKTLILPRLQQEGERIRSVLDGPVLSNIDRIGADHVQSLLLKHCAPVLAKLRPPPDNQDAYRAEFGSLGPLLCSQVVKARAQAALQAQQVNRTTLTITQPRPTLTLSQAPQPGPRTPGLLKVPGSIALPVQTLVSARAAAPPQPS--------PPPTKFIVMSSSSSAPSTQQVLSLSTSAPGSGSTTTSPVTTTVPSVQPIVKLVSTATTAPPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPV--PPPASSPSPLSGSALCGGKQEAGDSPPPAPGTPKANGSQP--NSGSPQPAP.... 677
30 -10.8002j7n_A mol:protein length:1022 RNA-DEPENDENT RNA POLYMERASE  ali model follow..  10  297.......................................................................................................................................................................................................SKTYAIMTLEPHQIRHHKTDLLSPSGTGEVMNDGVGRMSRSVAKRI--VPSATYPSQRK---ECDFVDKHQRTLEVRSVASELPVLEDRARDKVKMRQ---AIGDRLINDLQRQFSEQKHALNRPVEFRQWVYESYSSRATRVSHGRVPF---LAGLPDSQEETLNFLMNSGFDPKKQKYLQ--DIAWDLQKRKCDTLKSKLNIRVGRSAYIADFWGV---LEENE-GFSSKFRDEEESFTLLSDCD-VLVARSPAHFPSDIQ--RVRAVFKPELH-SLKDVIIFGGDYDGDMAWV-LSRYLKKDKTTFKQLMASHGTGSAAKEQTTYDMIQKSFLGMCRLCYINNSVSNKPAIILS--------SLVGNLVDQSK---QGIVFNEASWAQLRRELLGGALSLPDPMYKS--------------DSWLGRGEPTHIIDYLKFSIARPAIDKELEAFHNAMKAAKDTEDGAHFWDDLASYYTFFKEISDKSRSSALLFTTLKNRIGERLVKNKEMRDSKDPYPVRVNQVYEKWCAITPEAMDKSGANYDSLELSFLADREMNTWALLRASTAFKLYYHKSPKFVWQMAGRQLAYIKAQMTSRPGEG-MTAFMYAGLMPDKKFTKQYVARLE-FDGIGFTGNGDY.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 1022
31 -10.8006cgr_n mol:protein length:3139 Large tegument protein deneddylase  ali model follow..  13  893.......................................................................................................................................................................................................TDAANQGLIERKPLDELARSIRDINAELRRFDALDAALGQQLDSDAAFVPAPGASPYPDDGG---SPEATRMAEEALRQARAMDAAKLTAELAPDARARLRERARSLEAMLEGARERAKVARDAREKFLHKLQGVLRGLKATLRASLPAGWSDL--PEAVRGAPPLRADMWGLLGQYRDALEHPTPDTATALSGLKNLFADAPETP--APIIAHAVSNAINAGSAAVATADPASTVDAAVR-LVDAVTAL--SDPALAFLAAMADSAA----KATRLQLTTLGSAAADLEGEHASLIQAATRATTGARESLAGHEGRFLLHAEGSPSGRALQELVIGA----------TRRRADELEAATADLREKMAAQRARSSHERWAADRVESGAEFDVVELRRLQANPRDFRKRAEQALGTNAKAVTLALETALA-----AAIHRIFGAAADTYADMFLARLLRLAGGLLERAQANDGFIDY----------HEAVLHLSEDLGGVVPFFQKGYAEYVDIRDRLDALRADARRAIGSVALDLAAAAEEISAVRNDPAAAAELVRAGVTLPCPSVACVAALERVDQSPVKDTAYADYVAFVTRQDLADTKDAVVTERVTAGLR------EVLAAREGLANTVAKTLDQA---RSAEEIADQVEILVDQTEKARELDVQAVAW.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 1686
32 -10.7001nkt_A mol:protein length:922 Preprotein translocase secA 1 subunit  ali model follow..  12  45............................................................................................................................................................................KRLKKVADYVGTLSDDVEKLTDAELRAKTDEFKRRLADQKLPEAFAVAREAAWRVLDQRP-----DVQVMGAAALHLGNVAEMKTGEGKTLTCNALAGNGVHIVTVNDYLAK-----RDSEWMGRVHRFLGLQVGVILAT--------MTPDERRVAYNADITYGTNNEFRDNMAHSLDDLVQRAIVDEVDSILIDEARTPLIIS-----PADGASNWYTEFARLA---PLMEKDVHYEVDLRKRTVGVHEK-SYLNNALKAKELFSRDVRDGEVLIVDE-----------FTGRVLIGRRYN-------------EGMHQAIEAKEHVEIKAENQTLATITLQ-LAGMTGTAQTEAAE--LHEIYKLGVTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYA--KGQPVL------------------------GTTSVERSEYLSRQFTKR-------RIPHNVLNAKYHEQEATIIAVAGRRGGVTVATNMAGRGT-DIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEA------------------KEVIEAGGLYVLGTERHESRRID-NQLRGRSGRQGDPGERFYLSLGDELMRRFNGADDVPIEAKMVTRAIKSAQTQVE---QNFEVRKNVLDEVMNQQRK-YAERRRILEGENLKDQALDMVRDVITAYVDGATGEG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 721
33 -10.6005aor_A mol:protein length:1293 DOSAGE COMPENSATION REGULATOR  ali model follow..  10  357........................................................................................................................................................................................................................................................................SMDYERSLRDRRQNDNEYRQFLEFREKLPIAAMRSEILT----AINDNPV-------------------IIRGNTG------CGKTTQIGYANIYVTQPR-RISAISVAERVARER-----------EQLGDTV-----------------GYSVRFESVFPRPYGAI--------FCTVG--VLLRKEAGLRGVS----------------HIIVDEIHERDVNSDFLLVILRDMVDTYPDLHVILMSAT-LEVPGRAFPV---LEDIIQMTDFVPSAESRRKRKEVEDEEQLLSEDKDEAEINYNKVCEDKYSQKTRNAMAMLSSFELLEALLMHIKSKNIPGAILV----FLPGLQNTNIFGDTSQYQILPCHSQIPRDEQRKVFEPVPEGVTKIILSTNISITIDDIVFVIDICKARMKLFTSHNSKTNLEQRKGRAGRVRPGEDNLTPEMFRTPLHEMALTIKGSIHHFLSKALEPIEAEVLLREMRCLDANDELTPLGRLLARLPIEGKMMVLGAVFGCAD-IGQRRLANHQKALSGTKCSDHVAMIVASQMWRREKQRGEHMEARFCDWKGLQMSTMNVIWDAKQQLLDLLQQAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 975
34 -10.6003va7_A mol:protein length:1236 KLLA0E08119p  ali model follow..  14  7.............................................................................................................................................................................................................................................................GLVPRGSHMASEAQKKKPFETVLIANRIMKTLKRMGIKSVAVYSDPDKYSQHV-TDADFSVALHGRTAAETYLDIDKIINAAKKTGGFLSENAFSDRCSQENIVFVGPSGDA-AERAKVPKEVAKKLEYPVMV---------KSTAGGGGI--GLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMRHVEFGKAIIGERDCSLQR-----RNQKVIEGSLLKYKCAGTVEFIYDEQRDEVNARL-QVEHPITEMVTGLDLVEWMLRIAANDSPDFDNTKIEVSGASIEAR--LYAENPVKDFRPSPGQLTSVSFPSWARVDTWVKKGTNVYDPTLAKIIKDRNDAIMKLNQALNETAVIASSKMFKEAKVATKVLDSFDYKPCAFEVLAPGANTSVQDYPGRTGYWRIGVPPSGYSFRLANRVVGNNSKSPALEITLNGPK-------LFHTETVIAVSGGTVSCTLNDAQIAQNEPIEVKRGDILSVGKVTVGRAYLSIRGGIDGSRSAMGNMGGYNGRILKLGDVLPQAAPKSLLPTLSTNKDGPHSIDLFKEEYIEQFFNDKWKVHYNSNRFGLIGPKPKWAEAGLHPSNAHDY-EPVIITCDGVAEAELWKVGQLTPGD............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 771
35 -10.3002gv9_A mol:protein length:1193 DNA polymerase  ali model follow..  9  399...........................................................................................................................................................................................................................................DSEFEMLLAFMTLVKQYGPEF-VTGYNIINFDWPFLLAKIITDKIKLSSYKLNAVAEAVLKDKKKDLSYRIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKFLPHLELSAVARLAGINITRTIYDGQQIRVFTCLLRLADQKGFILPDTQGR-FRGAGGEAPKRPAAAREDEERPEEEGEDEDEREEGGGEREPEGARETAGRHVGYQGAKVL---DP---TSGFHVNPVVVFDFAS--LYPSIIQAHNLCFSTLSLRADAVAHLEAGKDYLEIEVGGRRFVKAHVRESLLSILLRDWLAMRKQI-RSRIPQSSPEEAVLLDKQQAAIKVVCNSVVAATVTTIGREMLLAYVHARWAAFEQLLADFPEAADMRAPGPYSMRIIYGDTDSIFVLCRGLTA----------AGLTAMGDKMASHISRALFLPPIKLECEKTFTKLLLIAKKKKGVDLVRKNNCAFINRTSRALVDL-----YDDTVSGAAAALAERPAEEWLARPLPELQAFGAVLVDAHRRITDPERDIQDFV-----LTAELSRHPRAYTNKRLAHLTVYYKLMARRA---QVPSIK-DRIPYVI--VAQTREVEETVLRELDA-APPAALPSPAKRP.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 1076
36 -10.2005n8o_A mol:protein length:1756 DNA helicase I  ali model follow..  9  1............................................................................................................................................................................................................................................................................................................MMSIAAGNYYTDKLGSMGERWAGKGAEQLGLQGSVDKDV--FTRLLEGRLPD--GADLSRMQDGSNKHRPGY------DLTFPKSVS------MMAML--------GDKRLIDNQAVDFAVRQVEALASTRVMTDGQS-ETVLTGNLVM-SRDPQLHTHAVVANVTQ--EWKTLSSDKVGKTGFIENVYANQIAFGRLYREKLKEQVEAL------------GYETEVVGKHGMWEMPGVPVEAFSGRSQAIREAVGEDASLK----------------SRDVAALDTRKSKQHVDPEIRMAEWMQTLKETGFDIRAYRDAADQRTEIRTQAPG------GPDVQQAVTQAIAGLSERKVQFTYTDVLARTVGILPPENGVIERARAGIDEAISREQLIPLDREKGLFTSGIHVLDELSVRALSRDIMKQNRVTVHPEKSVPRTAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVADRRSQMNLKQ-DERLSGELITGRRQLLEGMAFTPGSTV---------IVDQGLSLKETLTLLD-GAARHNVQVLITDSGQRTGTGSALMAMK-DAGVNTYRWQGGEQRPATIISEPDRNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTQAIRSELKTQGVLGHPEVTMTALSPVWLDSRSRYLRDMYRPG------MVMEQWNPETRSHDRYVIDRVTAQSHSLTLRDAQGETQVVRISSLDSSWSLFRPEKMP-------------------VADGERLRVTGKIPGLRVSGG---DRLQVASVSEDAMTVVVPGRAEPASLPVSDSPFTALKLENGWVETPGHSVSDSATVFASVTQMAMDNATLNGLARSGRDVRLYSSLDETRTAEKLARHPSFTVVSEQIKARAGETLLETAISLQKAGLHTPAQQAIHLALPVLESKNLAFSMVDLLTEAKSFAAEGTGFTELGGEINAQIKRGDLLYVDVAK---YGTGLLVSRASYEAEKSILRHILEGKEAVTPLMERVPGELMETLTSGQRAATRMILETSDRFTVVQGYAGVGKTVMSAVNMLPASERPRV--------VGLGPTHRAVGEMRSAGVDAQTASFLHDTQ-SNTLFLLDESSMVGNTERAYALIAAVASGQLQAIAPG................................................................................................................................................................................................................................................................................................................... 1109
37 -10.1003pie_A mol:protein length:1155 5`  ali model follow..  12  3....................................................................................................................................................................................................................IPKFFHFISERWPQISQLIDGSQIPEFLYLDMNSILHNCTHGDGSEVNSRLSEEEV---YSKIFSYIDHLFHTIK-----------KQTFYMAID-----GVAPRAKMNQQRARRFRTAMDAEKALQKAIENGDELPKGEPFDSNAITPGTEF--------AKLTENLKY-FIHDKITNDT--KVIFSGHEV-PG-------EGQHKIMDYIRA--IRAQEDYNPNTRHCIDADLIILG---STHDHHFCLLREEVTFGKRFLLHLSILREY--DF-GNDFLPNLPDLHLKKGAFPVLLQTFKEALQHMDG---------------YINEQGK-INLARFSIWLKYLSDFEYL-----NFEKKDIDVEWFNQQLENISLEGERKRTRMGKKLLMKQQKKLIGAVKPWLLKTVQRKVTSELQDADFEIFPLEDKELVRANLDFLKEFAFDLGLILAHSKSKDLYYFKLDLDSINXXXXXXXXXXXXXXXXXXXIYSERFVEWKDQYYKDKLDFSINDTDSLKEMTENYVGGLSDVIKGIDQNIEFHKGQPFKFQQLMAVLPER-----------SKNLIPVYRPLMYDEHSP--ILDFY-----PNEVELDLNGKTEAVV----------FVQKRLVEAMAPYKLSPDEKKRNSFGTDLIFIFNPQ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 664
38 -10.1005go9_A mol:protein length:4968 RyR2  ali model follow..  13 1458...........................................................................................................................................................................................................................................................................................DLDRVRTVTVTLGDEKGKVHESIKRSNCYMVCAGESMSPGQGRNNNGLE-VVDAASGLLTFTANGKDLSFPAVFAQATSPNVFQFELGMPLSAGLKNPVPQCPPRLHVQFLSHVLMPNQFLKVDVSRISERQGWLVQCLEPLQFMSLHIPEENRSV------DILELTEQEELHY-------------HTLRLYSAVCALGN----AHALCSHV--------EPQLLYAIENKYMP----GLLRAGYYDLLIDIHLMMNNEFIVPMTEETKSITLFPDENKKHGLPGILRPRMQFSSPSFVSI----NNECYQYSPEFPLDILKAKTIQMLTEAVQEGSLHRDPVGGTTEFLFVPLIKLFYTLLIMGIFEDLKHI-LQLIEPSVFKEAAGP--LEKEPCASEDSRLEGPAEEESKGGKRPKEGLLQ----MKLPEPVKLQMCLLLQYLCDCQVRHRIEAIVAFSDDFV-LQDNQRFRYNEVMQMSAALTARKTKEFRSPPQEQINMLLNFKDDKSECPCPEEI--------------------RDQLLD........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 1999
39 -10.1004anj_A mol:protein length:1054 UNCONVENTIONAL MYOSIN-VI, GREEN FLUORESCENT PROTEIN  ali model follow..  11  20........................................................................................................................................................................................................................................................................................NIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRI---YTYVANILIAVNPYFDIPKI--PHVFA--IADKAFRDMKVLKLSQSIIVSGES---GA-------GKTENTKFVLRYLTESYGTGQDIDDRIVEANPLLFGNAKTVRNNNSSRF------GKFVEIHFGFVSHYLLE-GKEERNYHI-ASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQIGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLETSSYFIGVLDIA---EHNSFEQFCINYCNEKLQQFQELYQKEGLG-VDNQDCIDLIEARLVGILDILDEEN---RLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDE--------IIRHFA-GAVCYETTQFVEKNFKTQLSTGASFIRCIKPNLGMVSV-LDLMQGGFPSRA---SFHELYNMY.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 718
40 -10.0005eul_A mol:protein length:836 Protein translocase subunit SecA, Insertion Peptide Chimera  ali model follow..  12  1...........................................................................................................................................................................................................................................................................MLGILNKMFDPTKRTLNRYEK------IANDIDAIRGDYENLSDDA---------------------LKHKTIEFKERLEGATTD-------------------LVEAFA--VVREASRRVTGMFPFKVQLMGGVALHDG-NIAEMKTGEGKTLTSTLPVYLNALT-------HVVTVNEYLASRDKIFEFLGLTVGLNLNSMSKDEK------EAYAADFD-DNMVLYKEQMVQRPLH-FAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVV--IVDRLMKGRRYSEGLHQAIEEIQNESMTLATITFQNYFRMYEKLAGMTYNMQVVTIPTNRPVVRDDR-GKFKAVAEDVAQRYMTGQVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKGAVTIATNMAGRGTDIGVKELGGLVGTERHESRRIDNQLRGRSLDRFGMDDSTPIQSKMVSRAVESSQKRVE---NNFDSRKQLLDDVLRQQRE-YKQRFEVIDSENLREIVENMIKSSLERAIA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 640
41 -9.9405mq0_V mol:protein length:1145 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22  ali model follow..  12  485..................................................................................................................................................................................................................................................................................VYAMRSELIQAVRDNQFLVIVGETGSGKTTQITQYL--SNYGMIGCTQPRRVAAVSVAKRVAEEVG------VGHDVGYTIRDVTGPDTRIKYMTDGM---LQREALLDPEMSKYSVIMLDEA--------------ERTVATDVLFALLKKAAIKRPELKVIVTSATLNSAKFYFLNCPIIN-----------IPGKTFPVEVLYSQTPQMDYPGDIL-VFLTGQEEIDSCCEILYDRVKTLILPVYSA-LPSEIQSKIFE-----------TPKGSRKVVFATNIAETSITIDGIY-------------VVDPGFAKINIYNARAGIEQLIVSPISQAQANQRKG-----RAGRTGPGKCYRLYTEFYNEMLENTVPEIQRQNLSHTILMLKAMGINDLLKFDFMDPPPKNLMLNALTELYHLQSLDDEGKLTNLGKEMSLFPMDPTLSR------------------------SLLSSVDNQCSDEIVTIISMLSVQNV-----------FYRPKDRQLEADSKKAKFHYGDHLTLLNVYTRWQQANYSEQ-LHFRHLKRARD--VKSQISMIFKKIGLKLISCHSDPDLIRKTFVSG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 1028
42 -9.8302qf7_A mol:protein length:1165 Pyruvate carboxylase protein  ali model follow..  13  1...........................................................................................................................................................................................................................................................................MGGPISKILVANRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDLGPIESYADAIHPGYGLLSES-FVDACNKAGIIFIGPKADT-AISVGVPAKMAAAIGYPVML---------KASWGGGGR--GMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLRHVEHGNVVLFERDCSVQRPYLSEAQRQELAAYSLKIAGAT-GAGTVEYDADTGKFYF-------IEVNPRIQVEHTVTEVVTGIDIV--AQIHILDGAAIGTPQSGVPNQEDIRLNGHALQCRVTTEDPE--------------HNFIPDYGRITAYRSASGFGIRLDGGTSYSGAII--PLLVKVTAAPNPLEAISRMFRIRGVATNLTFLEAINSYTTRFIDTT-LLTYLADVTVNGHPEAKKQLLDTLGPKKFGEWMRNEKRVLLTDTTMRDGHQSL------LATRMRTDIARIAGTYSHALPNLLSLECWG--GATFDVSRLALI--REGAPNLLLQMLLRGANGVGYTNYP-DNVVKYFVRQAAKGGIDLFRVFMDAIAEENKLCEAATNLAVAGLLKKVLFKALRGLPIHHDTSGIAAATVLAAVEAGVDAVDAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 775
43 -9.8101tf2_A mol:protein length:844 Preprotein translocase secA subunit  ali model follow..  11  4...........................................................................................................................................................................................................................................................................MLGILNKMFDPTKRTLNRYEK------IANDIDAIRGDYENLSDDA---------------------LKHKTIEFKERLEGATTD-------------------LVEAFA--VVREASRRVTGMFPFKVQLMGGVALHDG-NIAEMKTGEGKTLTSTLPVYLNALT-------HVVTVNEYLASRDKIFEFLGLTVGLNLNSMSKDEK------EAYAADFD-DNMVLYKEQMVQRPLH-FAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQIVDSFTGRLMKGRRYSEGLHQAIEEIQNESMTLATITFQNYFRMYEKLAGMTYNMQVVTIPTNRPVVRDDR-GKFKAVAEDVAQRYMTGQVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKGAVTIATNMAGRGTDIGVKELGGLVGTERHESRRIDNQLRGRS----RQGDPG-------ITQFY--LSMEDELMRRFGAEMAMLDRFGMDDSTPIQSKMVSRAVESSQKRVEGNNFDSRKQLLQY---DDVLRQQR..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 610
44 -9.8005i8i_A mol:protein length:1829 Urea Amidolyase  ali model follow..  14  561................................................................................................................................................................................................................................................FIAMVP-EPLGIGSVELESGEQVTEAQKKKPFETVLIANRIMKTLKRMGIKSVAVYSDPDKYSQHV-TDADFSVALHGRTAAETYLDIDKIINAAKKTGGFLSENAFSDRCSQENIVFVGPSGDA-AERAKVPKEVAKKLEYPVMV---------KSTAGGGGI--GLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMRHVEFGKAIIGERDCSLQR-----RNQKVIEGSLLKYKCAGTVEFIYDEQRDEVNARL-QVEHPITEMVTGLDLVEWMLRIAANDSPDFDNTKIEVSGASIEAR--LYAENPVKDFRPSPGQLTSVSFPSWARVDTWVKKGTNVYDPTLAKIIKDRNDAIMKLNQALNETAVIASSKMFKEAKVATKVLDSFDYKPCAFEVLAPGANTSVQDYPGRTGYWRIGVPPSGYSFRLANRVVGNNSKSPALEITLNGPK-------LFHTETVIAVSGGTVSCTLNDAQIAQNEPIEVKRGDILSVGKVTVGCRAYLSIRGG-GSRSTMGNMGGYNGRILKLGDVLPQAAPKSLLPTLSTNKDGPHSIDLFKEEYIEQFFNDKWKVHYNSNRFGLIGPKPKWAEAGLHPSNAHDY-EPVIITCDGVAEAELWKVGQLTPG-DTIQFVPLSYGVARQLKESQDKSIDNFEEGSLLE.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1403
45 -9.7405lj5_Q mol:protein length:1071 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16  ali model follow..  14  348..................................................................................................................................................................................................................................................EQLPV------------------FRCRSQLLSLIRENQVVVIIGETGS------KTTQLAQYLYEEGYANDRGKSIVVTQPRRVAAISVAKRVAMEMQ------LGKEVGYSIRVTDSECTKLKFVTDGI---LLRETLLDDTLDKYSC-----IIDEAHERSLNTDILL---GFFKILLARRRDLKL------IITSATMNAKKFFFGNAPQFT-----------IPGRTFPVQTIYTSNPVQDYSGDIL-IFMTGQEDIETTFDTLQEKFLQVYSKKFGTANFEEINDIILPIY------SALPADLQFKIFQDLHGTKRKIIIATNIAETSL-TIKGIRYVIDCGYSKLKVYNPKIGLDSLVITPISKANADQRSG-----RAGRTAPGTAYRLYTEFKEDMYLQTIPEIQRTNLSNTLLLLKSLDVTDELSKPFIDKPPLQTFLSSLYELWFIGAIDTSGQLTPLGLQMAKFPLQPSLSK------------------------ILLIAVRNGCSDEMLTIVSMLSVPQV-----------FYRPKERQKEADIARNKFFKSDHLTLLNVFEQWRANNFSSH-VQYKSLVRARD--IRDQLLTILKSQKIPVISSGKDWDIIKKCICSG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 910
46 -9.7305xjc_Y mol:protein length:1220 ATP-dependent RNA helicase DHX8  ali model follow..  12  567..................................................................................................................................................................................................................................................................................IYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYL--TSRGKIGCTQPRRVAAMSVAKRVSEEFG------LGQEVGYTIRDCTSPETVIKYMTDGM---LLRECLIDPDLTQYAIIMLDEA--------------ERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAV--YFYEAPIFT-----------IPGRTYPVEILYTKEPETDYPGDIL-VFLTGQEEIDTACEILYERMKSLILPVYSA-LPSEMQTRIF------------APPGSRKVVIATNIAETSLTIDGIY-------------VVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAG-----RAGRTGPGKCYRLYTEYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCK------------------------MLIMSVHLGCSEEMLTIVSMLSVQNV-----------FYRPKDKQALADQKKAKFHEGDHLTLLAVYNSWKNNKFSNP-IQARSLRRAQD--IRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 1110
47 -9.7303vkh_A mol:protein length:3367 Dynein heavy chain, cytoplasmic  ali model follow..  10  246...............LEGI---FSGSGDINQLLPAESTRFKSINSEFIAILKKVSGAPLI-IERIQQTMERLSDLLGKVQKALGYLERQRSAFARFYFVGDEDLLEIIGNSKDIIKIQKHFRKMFAGLANLTLDDEKTTIIGMSSAEETVTFKKPISIANGPKIHEWLTMVESEMKSTLATLLSESLQHFNQVDVNDHSKYSETSQIVWSTQVDQALGGGTLQQSKIQEQLQSIEQTTQMILNNLA-------DSVLQDLSAQKRKKFEHLITELVHQRDVVRQLQKCKNLTGNKDFDW---LYHMRYYYDAT----------QENVLHKLVIHMANATFYYGFEYLGI----GERLVQTP-----TDRCYLTLTQALESR-----------------MGGNPFGPAGT------GKTETVKALGSQLGRFVGFDLQAMSRIFVG----FNR--EERILSAVSQQIQLLGGKNISLHQDIFVTMNPGYAG---RSNLPDNLKKLFRSMAMIKPDREMIAQSQGFKTAEVLAGKIVPLFKLCQEQ--LSAQSHYDFGLRA------------LKSVLVSAGRKCQPPQLPPITDAESKTKADQIYCQYEIGVLLNDIPLIQSLLLDVFPGDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMM----VGPSGGGKTTSWEVYLEAIEQVDNIKSEAH------DPKAITKDQLFGSLDLTTREWTDGLFTATLRRIGESTKRHWIIFDGD--DPEWVENLNSLLDDNKLNGERLALPNNVRVM--FEVQDLKYATLATISR----GM----WFSEEILTTQMIFQNYLDTLSN---EPFDPQEKEQQKRNENAQLQQQQQTTIT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 1095
48 -9.7303vkg_A mol:protein length:3245 Dynein heavy chain, cytoplasmic  ali model follow..  10  246...............LEGI---FSGSGDINQLLPAESTRFKSINSEFIAILKKVSGAPLI-IERIQQTMERLSDLLGKVQKALGYLERQRSAFARFYFVGDEDLLEIIGNSKDIIKIQKHFRKMFAGLANLTLDDEKTTIIGMSSAEETVTFKKPISIANGPKIHEWLTMVESEMKSTLATLLSESLQHFNQVDVNDHSKYSETSQIVWSTQVDQALGGGTLQQSKIQEQLQSIEQTTQMILNNLA-------DSVLQDLSAQKRKKFEHLITELVHQRDVVRQLQKCKNLTGNKDFDW---LYHMRYYYDAT----------QENVLHKLVIHMANATFYYGFEYLGI----GERLVQTP-----TDRCYLTLTQALESR-----------------MGGNPFGPAGT------GKTETVKALGSQLGRFVGFDLQAMSRIFVG----FNR--EERILSAVSQQIQLLGGKNISLHQDIFVTMNPGYAG---RSNLPDNLKKLFRSMAMIKPDREMIAQSQGFKTAEVLAGKIVPLFKLCQEQ--LSAQSHYDFGLRA------------LKSVLVSAGRKCQPPQLPPITDAESKTKADQIYCQYEIGVLLNDIPLIQSLLLDVFPGDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMM----VGPSGGGKTTSWEVYLEAIEQVDNIKSEAH------DPKAITKDQLFGSLDLTTREWTDGLFTATLRRIGESTKRHWIIFDGD--DPEWVENLNSLLDDNKLNGERLALPNNVRVM--FEVQDLKYATLATISR----GM----WFSEEILTTQMIFQNYLDTLSN---EPFDPQEKEQQKRNENAQLQQQQQTTIT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 1095
49 -9.6605a22_A mol:protein length:2109 VESICULAR STOMATITIS VIRUS L POLYMERASE  ali model follow..  9  287.............KMVEPICNLKLMKLA----HFENHIKTSVDEGAKIDRGIRFLHDQIMSVKTVDLTLVIYGS-------HWGHIDYYTGLEKLHSQVTMKKDIDVSYAKALASDLARIVLFQQFNDHKKWFVNGDLLPHDHPFKSHVKENTWPTAAQVQDFGDKWHELPLIKCFEIPDLLDPSIIYSDKSHSMNRSERMNPNTPIPSKKVLQTMLDTKATNWKEFLKIDEKGLDDDDLIIGLKG------ERELKLAGRFFSLMSWKLREYFVITEYLIKTHFVPMFKGLTMADDLTAVIKEAICIANHIDYEK----RKLSNGPVFRVMGQFLGYPSLIERT-------FEKSLIYYNGMRVHNNTLGLRQKGWTILNLLVIQREAKIRNTAKVLAQGDNQ---VICTQYKTKKSRNVVELQGALNQMVSNNEKIMTAIKIG--LLINDDETMQSADYLNYKIPIFRGRWSRVTCVT----NDQIPTCANIM-VSTNALTVAHKYAMLYLDPSI----GGVSGMSLSRDPVTSLSFWRFIHVHARSEHLKEMSAVFGNPEIAKFRITVEDPTSL-SPANLLKTEVKKCLIESRQTIRNQVIKDATIYLYHEEDRLRSFLWSINPL-----RFLSEFKSGTFLGVADGLISLFQN-----------SRTIRNSFKKKYHRELDDLIVRSEVSSLTHLGKLHLRRGSCKMWTCSATHADTLRYKSWGRTVIGTTVPHPLEMLSGFNYVSVHCPDGIHDVFSSRGPLPAYLGSKTSESTSI-------------LQPWERESKVPLIKRATRLRDAISWFVEPDSKLAMTILSNIHSKRTGSALHRF----STSRMSHGGFASQSTAALTRLMATTDTMRDLGDQ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1263
50 -9.6203jcm_A mol:protein length:2413 Pre-mRNA-splicing factor 8  ali model follow..  10 1347...........................................................................................................................................................................................................REAIVATEPLLDILVKGETRIQNRVKLGLNSKMPTRF--PAVFYTPKELGGLGMISASHILIPASDLSWSKQTDTGITHFRAGMTHEDEKLIPTIFRYITTWENEFLDSQRVWAEYATKRQEAIQQNRRLAFEELEGSWDRGIRGHRIEFKQYSLERNSPFWWTNSHHDGKLWNLNAYRTDVIQALGGIELEHTLFKGTGF--EGLFWEKASGFEDSMQFKKLTHAQRTG-----LSQIPNRRFTLW--SPTINRANVVGFLVQLLHGKIPTLKISLIQIFRAHL--ESIVFDICQILDGELDVLQIESVTKETVHPRKSYKMNSSAADITM--WEVSKPSLLHETNDSFK----------------GLITNKMWFDVQ-----------------------------------LRYGDYDSHDISR---------------YVRAKFLDYTTDNVSMYPSPTGVMIGI-DLAAYGNWFNGLKPLIQNSMRTIMKANPALYRERIRKGLQIYQSSVQEPFLNS--SNYAELFNNDIKLFVDDTNVYRVTVHKTFEGN-VATKAINGCIGHLFLKIIHTSVWAGQKRLSQLAKWKTAEEVSALVRS-----LPKEEQPKQIIVTRKAMLDPAIRPTELRLPFSAAMSIDK------DVVMKATEPQMVLFNIYDDWLDRI...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1999
51 -9.5904zhj_A mol:protein length:1351 Mg-chelatase subunit ChlH  ali model follow..  10  913...............................................................................................................................................................................................................................................................................................................................EQVCADNEFGGLLQALEGEPGPGGDPIRNPNVLPTGKNIHALDPQS------IPTLAAVQS------KVVVDRLLERQRAENGGNYP--------ETIASVLWGTDNIKTYGESLAQIMW---------MVGAKPV-------------------------------DALGRVNKIEVPLEELGRPRIDVVVNCS-------------GVFRDLFINQMNLL--------DQAVKLAAEADE---------------------------------------------PLEMNFVRKHALEQAEEMGIGVREAATRIFSNASGSYSSNVNLAVENS-SELQEMYLKRKSFAFNSDN----PGMMDQNRDMFERALKTADATFQNLDSSLTDVSHYFDSDPTKLISTLRDVRTLSETVRLDARTKLLNPKWYEGMLSHGYEGVRELSKRLVNTMGWSA-------------TAGAVDNWVYEDANSTFIKDEEM-----CKRL-LNPNSFRRMVSTLLEVNGRGYWEERLQELYQEVEDRIEG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 1343
52 -9.5902nbi_A mol:protein length:494 HEP200 protein  ali model follow..  15  193................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TSPAPSSQPSQCAEVIEQCPIDECFLPYGDSSRPLDCTDPAVNRPDCDVLPTPQNINCPACCAFECRPDNPMFTPSPDGSPPICSPTMMPSPEPSSQPSDCGEVIEECPIDACFLPKSDSARPPDCTAVGRPDCNVLPFPNNIGCPSCCPFECSPDNPMFTPSPDGSPPNCSPTMLPSPSPSAVTVPLTPAPSSAPTRQPSSQPTGPQPSSQPSECALELCPYDTCFLPFDDSSRPPDCTDPSVNRPDCDKLSTAIDFTPTCCPTQC--RPDNPMFSPSPDGSPPVSPTMMPSLPS 491
53 -9.5702eyq_A mol:protein length:1151 Transcription-repair coupling factor  ali model follow..  10  433......................................................................................................................................................................................................................................................................................................AEHGFVDTVRNLALICESDLLGERVARRRQDSRIRNLAELHIGQ-GRYAGEAGGITGEYNDAKLYVPVSSLPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQR--AAKEGFAFKHDRE-QLFCDSFPFETTPDQAQAINAVLSDMCQPLAM------------------RLVCGDV-KTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFIEMISRFRSAKEQTQILAEVADILIGTHKLLQSDV-----KFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATP---------------------IPRTLNMMSGMRDLSIIATPPAR-VKTFVREYDSMV-------VREAILREILRGGQVYYLYN--------------VENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN-CTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHTPHPKAMTTDAQKRLEAIASLED-------LGAGFALATHDLEI--------RG-AGELLGEEQSGSMEELLENAVDAL.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 989
54 -9.5105n2e_A mol:protein length:1010 DNA polymerase  ali model follow..  9  450.....................................................................................................................................................................................................................................................................DYNLNIALDMARYCIHDACLCQYLWEYYGVETKTDAGASTYVLPQSMVFEY---------RASTVIKGPLLKLLLETKTILVRSETKQKFPYEGGKVFAPKQKMFSNNVLI---FDYNSLYPNVCIFGNLETLVGVVTNRLEEEINNQLLLQKYPPPRYITVHCEPRLPNLISEIAIFDRSIEG--TI----PRLLR-TFLAERARYKK----MLKQATSSTEKAIYDSMQYTYKI------------VANSVYGLMGFRNSALYSYASAKSCTGRRMILYLESVLNGAELSNGMLRFANPLSN----------PFYMDDRDINPIVKTSLPIDYR-----------------RFRSVYGDTDSVFTEIDSQDV----------DKSIEIAKELERLINNRVLFNNFKIEFEAVYKNLIMQSKKKTMKYSASSNSKSVPERINKGSETRRDVSKFHKNMKTYKTRLSEMLSEGRMNSNQVCIDILRSLETDLRSEFDSRSSPLELFM---------SRMHHSNYKSADNPNMYLVTEYNKNNP---ETIELG-ERYYFAYICPANVPWKLGSDQRIFYEVYFKRLTSEIVNLLDNKVLCISFFER-----------GSKPTFYEA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 1010
55 -9.4304qsh_A mol:protein length:1148 Pyruvate carboxylase  ali model follow..  14  2...........................................................................................................................................................................................................................................................................MMNRIKKVLVANRVMRACTELKIKTVAIYSQEDTGSFHRYKSDEAYLVGAGKKPIDAYLDIENIIEIAKESGGFLSEN-FARRCEQEGIIFVGPKSKH-ALLADIPEEFGEKNGYPLMI---------KASLGGGGR--GMRVVESKEHVKESFERASSEAKAAFGNDEVYVKHIEHGNIVLFERDCSIQR-----RHQKVVE-SELRVKLMKNVDYNAEFEGDEVNPRVQVEHTITEMITGIDIVQSQLFMPDTGR-VVTPFYDSLLVKLCTWGMTFEQATRKMRRNLIEFRIRGVKTNIPNVVRHPDFASGNYNTSFIDTTPELFKFPHIRDRGTKTLRKQILDAKGP----LLTDTTLRDAHQSLLATRVRSKDIFQIADAMAHLLPNMFSFEMWGGATFDVAYRFLNEDPWVRLETLVKQSAQSGVDVFRVFDS--LNWIKGMEVSIDAVREAGKIVEAAICYTGDIDDDTRTKYDMAKELVAQGT--HILGIKDMAGLLKPQAA--YRLIGELKDTDVPHLHTHDTSGNGIYTYAAAVSAGVDIVDVASSAMSGATSSMTGLYYGLVNGNRQTNLAQNSQIINHYWED-VRHYYKDFDNALNSPQ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 826
56 -9.3505gky_A mol:protein length:5037 Ryanodine receptor 1  ali model follow..  13 1497..........................................................................................................................................................................................................................................................................................................................GGDFVSPGQQGRISHTIGCLVDLATGLMTFTANGKESNTFFQVEPNTKPAVFVLELGMPLSAAMKNPAPQCPPRLEVQMLMPV-MPNHFLQVETRRAGERLGWAVQCQDPLTMMALHIPEENRCM------DILELSERLDLHS-------------HTLRLYRAVCA-------GNNRVAHALCSHVDQAQL--LHALEDAHLP----GPLRAGYYDLLISIHLESACRSRRSMLSEYIVPLTPETRAITLFPPGRKGGNA--PGVGVTTSLRPPHHFSPPCFVAALPAAGVAEAPARLSPAIPLEALRDKALRMLGEAV--HARDPVGGSVEFQFV--VLKLVSTLLV-----MGIEDV-------KQILKMIEEVFTEEEEEEEEEEEEEEEEEEDEEEKEEDEEEEEKEDAEKEEEEAPEGEKEDLEEGLLQMKLPESVKLQMCNLLEYFCDQELQ----HRV------ESLAAF-------------AERYVDKLQANQYALLMRAFTMSAAETARRTRE................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 1997
57 -9.3405xjy_A mol:protein length:2305 ATP-binding cassette sub-family A member 1  ali model follow..  10  922.........................................................................................................................................................................................................................................................................................................................IQNLVKVYRDGMKVVDGLALNFYEGQSFLGHNGAGKTTTMTSGTAYILGKDIRSENLGVPQHNVLHIWFYARLKGLSEKHVKAEMEQMTSQLSG--------GMQRKLSVA-----------------FVGGSKVVILDEPT--RRGIWELLLKYRQGRTI------------------LSTH------HMDEADVLG---DRIAIISHGK-CVGSSLNQLGTGYYLTLVKKDVESSLSSCRNSSSTVSYLKKEDSVSQSSSDAGLGSDHESDTLTIDVSAIS--------------------NLIRKHVSEARLVEDIGHELTYVLPYEAAKEG-----AFVEL-FHEIDDRLSDLGISSYGISETTLEEIFLKVAEESGVDAETSDGTLPARRNRRAFGDKQSCLRPFTEDDAADPNDSDIDPESRETDLLSGMDGKGSYQVKGWKLTQQQFVALLWKRLLIARRSRKGFFAQVLPAV-----------FVCIALV--LQPWMYFVS---GTLELLNALTKDPGFG-MEGNPIPDTPCQAGEEEWTTAPVPQTIMDLFQNGN........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1474
58 -9.3205nug_A mol:protein length:4646 Cytoplasmic dynein 1 heavy chain 1  ali model follow..  9 1364..................................................................................................................................................................................................................DALLNQLKSFPARLRQYASYEFVQRLLK--YMKINMLV-EALKDLMKRLHVNWVVSELT--LGQIWDVDAIVKDVLLVAQGEMALEEFLKQIREDLFNKVKEHINSVSAMKLSPEEDALSWEDKLNRIMALFDVWIDVQRRWVYLEGIFTGSADIKHL---LPVETQR-----------SISTEFLALMKKVSKSPLVMDVLNIQGVQRSLERLADLLGK-------IQKAL--GEYLERERSPRFYFVGLQKHFKKMFAGSSIILNEVVLGISSR--EGEEVMFKTPVSITEHPKINEWLTL----VEKEMRVTLAKLLAESVTEVEIFGKATSIDPNTYITWIDKYQAQ--------VVLSAQIAWS---------------------------ENVETALSSMGGGGDAAPLHSVLSNVEVTLNVLADSVLMEQPPLRRRKLEHLIT-------ELVHQRDVT---------RSLIKSKIDNAKSFEWLSQMRFYFDPKQTDVLQQLSIQMANVQTPLTDRCYLTMTQALE-------ARLGGSTGKTESVKALGHQLGRFVL---NCDETFDFQAM-----------------GRIFVGL--------CQVGAWGCFD------EFNRLEERMLSAVSQQVQCIQEALREHSNPNY--DKTSA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1995
59 -9.2405o9g_W mol:protein length:1468 Chromo domain-containing protein 1  ali model follow..  13  332..............................................................................................................................................................................................................................................................................................................PEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVKGGELRDQLTG--INWKGDNGILAD------EMGLGKTVQTVAFISWLIFARRQ--------NGP-VVP-----------LSTMPAWLDTFEKWAPDLNCI---CYMGNQ---SRD-TIREYEFY-TNPRAKGKKTMKFNVLLTT-YEKD---DE--AHRLKNAESSLESLNSFKVANRMLI--TGTPLQNNIKE-LAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSAL-----TAGAKGGHFSLLNIMNE-------------LKKASNHPYLFDN---------AEERVLQKFGDGKMTRENVLRGLIMS--SGKMV--------------LDQLLTRLKK------------------------DGHRVLISQMVRMLDILGLDG-TVPSAQRRISIDHFNS----PDSNDFV------------FLLSTRAGGLGIADTVVRAHRIGQKNHRLVDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGNMFTATDNQKKLEDLNLDDVLNHAEDHVTTPDL................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 907
60 -9.2404w8f_A mol:protein length:2661 Dynein heavy chain lysozyme chimera  ali model follow..  9  93...............LYGI---LGENLDIQNFLPLETSKFKSLTSEYKMITTRAFQLDTTHIPNFDTTLKLTIDSLKMIKSSLSFLERQRRQFPRFYFLGNDDLLKIIGSGKHHDQVSKFMKKMFGSIESIIFLEDFITGVRSVEGEVLNLNEKIELKDSIQAQEWLNILDTEIKLSVFTQFRDCLGQLKDGTDIEV---TELVEKCLQTNQFSKYWKEVDMKIKGLLDKLNKSSDNVKKKIEALLVE---------------------------LHFNNVIGQLKNCSTKEEARLLWAKVQKFYQK--------------NDTLDDLNSVFISQSGYLLQYKFEYIGI----PERLIYTP-----LLIGFATLTDSLHQKY-----------------GGCFFGPAGT------GKTETVKAFGQNLGRV---------------VVVFNCDDSFDYQVL---------SRLLV-GITQIGAWGC-F--DQFN---------RLDEKVLSAVSANIQQ----------IQNGL--------------QVGKSHITLLEEETPLSPHTAVFITLNPGYNGRS-----LPENLKKSFREF---SMKSPQSGTIAEMILQIMGFEDSKSLASKIVHFLELLSSHFGLRTLKGVLRNCSPLISEFGEGEKTVVSLKRVILP--------SLGDTDELVFKDELSKIFDSAGTPLNSKAIVQCLKDAGQRSGFSMSEEFLKKCMYMQKTQQALILVGKAGC-GKTATWKTVIDLYGSMLKATLEWRDGLFTSILRRVNDDITGTFKNSDLDPEYVEAMNSV------------LDDNKILTLPNG--NFRILFETDNLDHTTPATITRCGLLWFS................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 854
61 -9.2305fsw_A mol:protein length:1034 RNA DEPENDENT RNA POLYMERASE QDE-1  ali model follow..  9  328...............................................................................................................................................................................................................MSRSVARKIRDALGLSDIPMWLMDVADAGDDDWI---------ETYPSQRK---KCDDADALHRTLEIRSVSTELPVLEDRAKDKARMRR---AIAARLMNDLKKQFDSQKAAVERPLQFRQWVNECTNSRSERVRHGQVPF---LGGLPENKGEVLSFLLNSGF----RRQKYIQDLAFDLQKQRCEVLRTKLNIHVGRSAYVVDFWGVEVHVGFSSKFRDDVDDTTYML---LTDCD-VLVARSPAHFPSDIQ--KVRAVFKPQLH-ALKDVIVFGGDYDGDMAWV------------------DPDIVENFTNADMKTTFGELVRDTGRTGAAARHEAVYDMINKSFQFAMQPNYLGICTNYKERVCYHNNSV------------------------SDGVALLLSTLVGKLVDQSKQGGEPRHIVDYLKFAVAKPTIDRELEELHKVMQASRRAPDLAVYFENFKALTAESRSLRAVLEALQNALGAVEHEWKVLMSKGSSSSLTYPEKVRQLHAKWCAIEPRAVGRAGSNRLDAKTAALLEQP-AGTSYWALLRASTAFKAYYKTNPKFVWQMAGAQLAFIKAQMSSPGGGG-VTPLMYAGLAPDGRFVKQYLARLECDGSQYPDDDL................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 1010
62 -9.2004bzj_A mol:protein length:1273 PROTEIN TRANSPORT PROTEIN SEC31  ali model follow..  10  4...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LAEFSRTAT--LLVSGTVSGTVDANFSTDSSLELWSLAADSEKPIASLQVDSKFNDLDSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVVLASGGNNGEIFDMNKCTE--GQSMSSVDEVISLAWNQSLAHV------------FASAGSSNFASI------LKAKKEVIHLSYTSPNSGIKQQRVATATGSSILIWD--LRNANTPLQTLNQGHQGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTK----------------------------------------------------EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLV------------------------QITPDGKGVSITNPKISGLESNTTLSEALKTKDFKPLINQRLVKVIDDVNEEDWNLLEKLSMDGTEEFLKEALAFDNDESDAQDDANNEKEDDGEEFFQQIETNFQPEGDFSLSGNIEQTISKNLVSGNIKSAVK------------------------------------------------LENDLLMEAMVIALDSNNERLKESVKNAYFAKYGSKSSLSRIL-------------------YSISKREVDDLVENLDVSQWKFISKAQRNEMLIKLGDRLKENSLDKVASIWLSEDLEDKLKKDNKTIYEAHSECLTEFIERFTVFSNFINGSSTINNEQLIAKFLEFINLTTSTGNFELATELIASGKSLPAQNPATATTSKAKYTNAKTNKNVPVLPTPGMPSTTSIPSMQAPFYGMTPGASANALPPKPYVPATTTSAPVHTEGKYAPPSQPSMASPFVNKTNSSTRLNSFAPPPNPYATATVPATNVSTTSIPQNTFAPIQPGMPIMGDYNAQSSSIPSQPPINAVSGQTPHLNRKANDGWNDLPLKVKEKPSRAKAVSVAPPNILSTPTPLNGIPANAASTMPPPPLSRAPSSVSMVSPPPLHKNSRVPSLVATSESPRASISNPYAPPQSSQQFPIGTISTANQTSNTAQVASSNPY 1040
63 -9.1205x6o_C mol:protein length:2368 Serine/threonine-protein kinase MEC1  ali model follow..  8 1048........NNLKSSNKYVINQNLDDIEVYLRRKQTERSIDFTPKKVGQTSDITLVLGALLDTSHKRNLDKDLCEKCAKCISMIGVLD---V---------------------TKHEFKRTTYSENEVYDLNDSVQTIKFLIWVINDILVPAFWQSENPSKQLFVALVIQESLKYCGLSSESWDMNHKELYPNEAKLWEKFNSVSKTTIYPL-TLDLLKTGTTENHPLHVFSSLIREDDGSLSNFL--LPYISLDIIIKAEKGTPYNGIIIEFDSIFTCNLEGMNNLQVDSLRMCYESIFRVFE-YCKKWATEFKQNYSKLHGTFIIKDTKTTNMLLRIDETTPSDLLAQETDSFERSALYLEQCYRIGD-GV-GNLVSKIEELQYSENWKFNVLGK---DDPKTTTRMLKSMYDHQLYSQIPDVKEWYSIGLEAANLELKNWVE-QYNIAKALIAISNEDPLRTQKYIHNSFRLIGTNFITSTLLKKQN---MKLHSLYDLSFLSSAKDILSMRKSFDQLKMNEQADADLGKTFFTLAQLARNNARLD----IASESLMHCLERRLPQAELEFAEILWKQGENDRAL-----KIVQEIHEKYQENSSVNARDRAAVLLKFTEWLDLSNNSASEQIIKQY------QDIFQIDSKWDK----------YSIG--SRLLERKKAEGYITNGRFEYRAISYFLLAFEKNTAKVRENLPKVITFWLDIAAASISEAPG--NRKEMLSKATEDICSHVEEALQHCPTYLTQLLSRLLHSHQSSAQIIMHILLSLAVEYPSHIL--YITALVNSNSSKRVLRGKHILEKYRQHSQNPHDLVSSALD--LTKALTRVCL.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1986
64 -9.1002y35_A mol:protein length:1140 LD22664P  ali model follow..  12  3....................................................................................................................................................................................................................VPKFFRYISERYPCLSELAREHCIPEFLYLDMNGIVHNCSHPDDNNIHFHLEEEQI---FQEIFNYVDKLFYLIK-----------QRLFFLSVD-----GVAPRAKMNQQRSRRFRTAREAEQQEAKAAQRGELREHERFDS-NCITPGTEFRLQE-------GLRAFLKTKISTDPLWQRCTVILSGQEA-PG-------EGEHKIMDYIRYMKTQP-------TRHCLDAALIILG---CTHELHFVVLREEVKFGRNVKLHLGLLREY--DW-GNDFIPHLPCLHISSNALPLLYRTYIGIYPTLGG---------------NINENGK-LNLRRLQIFISALTEVELDH--------------EHADDLKYMNNKSEAFDMDVGEITESQNLDSDLGALINKSMLLYDDDSEEDCSDENAVLLKEFQNYKRNFYRNKFK----------------------DPNDELIEELCHHYVNALQWVLDYYYRGVQS---------------------------TPFISDLKNIEQVEIAFHMGT--PFLPFQQLLAVLPAA-----------SAKLLPV---HDLMLLPTSPLAEFY-----PLEFESDLNGKKEAVV----------FIEGRLLAAMLPCQLSLEERERNRHGPMYVYKYSTV........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 586
65 -9.0705vyz_A mol:protein length:1145 Pyruvate carboxylase  ali model follow..  12  6............................................................................................................................................................................................................................................................................GSHMKKLLVANRVFRACNELGLSTVAVYAREDEYSVHRFKADESYLIGQGKKPIDAYLDIDDIIRVALESGGLLSEN-FATKVRAAGLVFVGPELHH-ADEAKVPLEFAKTYGYPVMI---------KAALGGGGR--GMRVARNDAEMHDGYARAKSEAIGAFGSGEIYVKHIEHGNIILHERDCSVQRVGLSPDFRNEICEAAVKLCKNV-NAGTVEFLVKDDKFYF-------IEVNPRVQVEHTITELITGVDIVQ-AQILIAQGKDLHREIGLPAQSEIPLLGSAIQCRITTEDPQNGFLPD---TGK-------------------DTYRSPGGFGIRLDVGNAYAGYEVTPYFDSLLVKVC--------ANEFSDSVRKMDRVLHEFRI-RGVKTNIP--------------FLINVIANENFTSGQATTTFIDNTPSLFNFPRLRDRGTKTLHYLSMITVNPLLNLEKKKTAKNILDEQGADAVVDYVKNTKEVLAHQSLLATRLRL-AIDQGLPELFSAEMWGGATFDVAYRFLN--TMFQMLFRGSNGYQNYPDNVIEAAHEGIDVFRIFDSLPQMEKSIQAVRDNGKIAEATICYTGDILDPSRPKYNIQYYKDLAKE....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 699
66 -9.0605lfc_A mol:protein length:1293 DsrV  ali model follow..  11  349...................................................................................................................................................................................SQLDLNNAALIVQEAIEKKISLEKSTKWLD-----DSIKSFIKSKRKDIQGNLVDTNPGWTIDSETGSTNHLQNGAFIFTNSPLVPEANAAEGNRLINRTPSQQTGNHISYASQPYSGDDWGYELLLGNDVDN---SNPIVQAEQLNWIHYLMNTITADPDAHLANFDSIRID----AVDNVDADL-LQIAGDYFKAAYQVGENDKNANQHIHILEDWSPNDVQQVNGNSQLTMDATMQNQLLAS---LTRPITSRDSMKSFTKDA--LLVHRTPN-HDSEVQTIIAKIISDKDSALYDEAFTEYNAD-QKQYTHNNMPS-------AYAILLTNKDTV-PRNGEYMANPYYDAITS--LLTARTKFVSGGQSLDVLTSVRYGKGALSATDNGSSDTRNQG---IGVIVSNNPNLD----------LNNDKVTLSMGISHAHQAYRPLLLTNSQGIVAYATDSEVPQNLYKTTNDKGELTFDASEIKGYD-GYLAVWVPVGASDEQDARTIASTEKNNGNSVYHSNAALDSQ--------------------------LIYEGFSNFQTVPSKNASADEYANVIIAKHAADFNKWGVTSFQMAPQYRSSTDGSF--DAVDTVQNGYFTDRYDLGFNPTKY-----GTDEDLRNAIKSLHAQKTYDGSSIQVMADFV---DQLYNMPLEQAVSVIRTDK........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1040
67 -9.0405msc_A mol:protein length:1174 Carboxylic acid reductase  ali model follow..  11  247.............................................................................................................................................................................................................................DPLALLIYTSGSTGTPKGAMYTNLNYMPMSH--GVLARGGTAAKSDMSTLFEDIGLVRPTE----------FFVPRVCDMVFQRYQSELDRRSVAGADLDTLDREVKADLRQNYLG--GRFLVAVVGSAHDGYGSTQIQRPPVLDYKLVDVPELGYFRTDRPHPR---------ELLLKAETTIPG--YYKRPE------VTAEIFDEDGFYKTGDIVAELEHDRLVYVDRRNNVLKLS-QGEFVTVAH-AVFASSPLIRQIFIYGSSERSYLLAVIVPTDDALRGRDTATLKSALAESIQRIAKDANLQPYEIPRDFLIETEPFTIANGLLS--------GIAKLLRPNLKERYGAQLEQMYTDLATGQADELLALRREAADLPVLETVS----RAAKAMLGVASADMRPDA-----FTDLGGDSALSFSNLLHEIF-------GVEVPVGVVVSPANELRDLANYIEAERNS-----GAKRPTFTSVHGGGSEIRAADLTLDKFIDARTLAAADSIPHAPVPAQTVLLTGANGYLGRFLTGGTLICVVRGSDAAAKRLDSAFDSGDPGLLEHYQQLAART-VLAGDIGDGLDDATWIVHPAAGTAEIVRLALSTVANGYGNSKWA--GEVLLRE---AHDLCGLPVAVFRSD............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 984
68 -9.0202vz8_A mol:protein length:2512 FATTY ACID SYNTHASE  ali model follow..  11  54........................................................................................................................................................................................................................LKDLSRFDASFFGVHSKQANPQ-MLLEVT-INPASLR-ALSRDPETLVGYSMIGCQRAMM--ANRLSFFFDFKGPSITISSSLLALQSAYQAIRGGEVGGLNVLLKPNSSLQFMKLGMLDGTTGYCRAEAVVTKKS-LARRVYATILNAGTNTDGSKEQ----VTFPSGDVQ---EQLIRSLYAPAGPDPESLEYIEAHGTGTKVGDPQELNGIVNALCATRREPLLIGSTLSLEHGPNLH-PALQDGRLQVVDRPLIRGGNVGINSFG--FGG--SNVHVILQPNSRPAPPPAQHAALPRLLQASGR-----TLEAVQT--LLEQGLRHSRDLAFVGMLNEIAAVSP--------------VAMPFRGYAVLGGEAGSQEVQQVPGSKRPVWFICSGMGAQWQGMLMRLDRFRDSILRSDQALKPLGLRVSDLLLSTLDDIVSSFVSLTSIQIALIDLL--TSLGLQPDGIIGHS---LGEVACGYADGCLTQEEEANVLPGAMAAVGLSWEECKQRCPPGI--VPACHNSKDTVTISGPQAA---MSEFLQQLKREDVFVKEVRIAFHSYFM-----ESIAPTLLRQLRKVILDPKPRSKRWLSTSIPEAQWQGSLARTFSAEYSVNNLVSP-----VLFQEALQHVPAHAVVVEIAPHAL......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 766
69 -9.0105fku_A mol:protein length:1160 DNA POLYMERASE III SUBUNIT ALPHA  ali model follow..  13  168..............................................................................................................................................................................................LELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQ--RSEEEMCELFADILANTVEIAKRCNVTVRLGEYFSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLEGFPGYFRGSGAGSLVAYA--KITDLDP-LNPERVSMPDF-KRDQVIEHVADMYGRDAVSQIITFGT----AAKAVIRDVGRVLGHPYGGMTLAKAFEAEPQLPEIYEADEEV-VTRNAGKHAGGVV-------------------------IAPTKITDFAPLYCDEEGKHPVTQFDKSDV---------AGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFED--ALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTEQVMQIAQVLSGYTLGGADML--------RRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIIKG----GEGPIEAIIEARGYFRELFDLCART-DTKKLNRRVLEKLAALMNSLGDALKAADQHAKAEAIGQLDL......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 923
70 -9.0105yzg_Z mol:protein length:1227 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16  ali model follow..  11  534..................................................................................................................................................................................................................................................................................IFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYL--TDYGMIGCTQPRRVAAMSVAKRVSEEMG------LGEEVGYAIRDCTSENTLIKYMTDGI---LLRESLREADLDHYSAIIMDEA--------------ERSLNTDVLFGLLREVVARRSDLKLIVTSATMDAE--FFGNVPIFH-----------IPGRTFPVDILFSKTPQEDYPGDIL-IFMPGQEDIEVTSDQIVEHLEELVLPIYSQ-LPSDLQAKIFQ-----------APDGVRKCIVATNIAETSLTVDGIM-------------VIDSGYCKLKVFNPRIGMDALQIYPISQANANQRSG-----RAGRTGPGQCFRLYTQYKNELLTTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSK------------------------MLIVSCDMGCSSEILLIVSMLSVPAI-----------FYRPKGREEESDQIREKFAESDHLTYLNVYLQWKNNNYSTI-IHAKAMRKVRE--VRAQLKDIMVQQRMSLASCGTDWDIVRKCICAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 1076
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Damiano JS, Stehlik C, Pio F, Godzik A., Reed JC. CLAN, a novel human CED-4-like gene. Genomics. 2001 Jul;75(1-3):77-83.