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Query: 3j79_1 mol:protein length:146 60S ribosomal protein eL27, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGKLLKPGKVIIILNGRRAGKKAVIVNTYEGQTRERPYSYCLVAGIEKHPLKVNKSMTKKKIVKRSKVKAFIKCINVNHILPTRYQVANDFDIKSLASDDVLKSKNKKKEVKKLGKIFRDKFLEPVNKKTGEVSKDISFLHKKLYFLast
1 -89.5003j79_1 mol:protein length:146 60S ribosomal protein eL27  ali model  100  1MGKLLKPGKVIIILNGRRAGKKAVIVNTYEGQTRERPYSYCLVAGIEKHPLKVNKSMTKKKIVKRSKVKAFIKCINVNHILPTRYQVANDFDIKSLASDDVLKSKNKKKEVKKLGKIFRDKFLEPVNKKTGEVSKDISFLHKKLYF 146
2 -81.5005xxb_Y mol:protein length:146 Ribosomal protein eL27  ali model follow..  55  1MVKLLKSGRVVVVLNGRHAGKKGVVVNT-WEGSKERQFAFCLVAGIEKAPLKVHKKMPAKKIEKRMRVKPFLKYINVNHLMPTRYTVSSDMDVKTMVPEDAMRTVDDRKAAKGLKKIFYEKFTNPVNEKVGKVSKDLLFLRKKLRF 146
3 -78.8003j7o_Z mol:protein length:136 Ribosomal protein eL27  ali model follow..  44  1MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNK----------WFFQKLRF 136
4 -78.3003jct_Z mol:protein length:136 60S ribosomal protein L27-A  ali model follow..  38  1MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQ----------WFFSKLRF 136
5 -75.9003jcs_Y mol:protein length:134 ribosomal protein L27e  ali model follow..  38  1MTKFLKPGKVVIVTAGRYAGHKAVIVQNSDIATKERPYGRALLAGIKKYPKKVVRGMSKQTIARRSQVGVFLRVVNHKHFLPTRYNVDMS---KELRGKINVSDASKRSRSRLVRHVFQARYNAGSSM----------WFFQRLRF 134
6 -74.3005t5h_a mol:protein length:132 Ribosomal protein L27  ali model follow..  39  1..KFLKPGKVVIVTSGRYAGKKAVIVQNTDSKSKERPYGHSLIAGMKKYPKKVVRGMSKRTIQRRSRVGVFLRVVNHKHFLPTRYNMDLS---RELRGRINVSDASKKAKSKQVRKLFQARYNAGSNR----------WFFQRLRF 132
7 -74.2005xy3_Z mol:protein length:139 Ribosomal protein L27e, putative  ali model follow..  34  2..SLLQAGRFVVMLQGRHAGKKAVVLAAYPEGTEDRKFPYAIVMGIEKYPKKVTKDMPTEVLVKKTQVKLFVKAVNFNHVMLTRHNVKDEDFFKKISVEKVVAAPAKKALLTEYAAVLRQKYLNNKMA----------WFFKPLQF 139
8 -19.0002joy_A mol:protein length:96 50S ribosomal protein L14e  ali model follow..  24  2..PAIEVGRICVKVKGREAGSKCVIVDIIDDN-------FVLVTG-----------------KDITGVKR--RRVNILHLEPTDKKIDIQKGASDEEVKKKLEESNLTEYMKEKIK.............................. 90
9 -16.2003j79_I mol:protein length:221 60S ribosomal protein eL6  ali model follow..  21  50LRKSIEVGKVAIILTGKHMGKRCIITKILNSG--------LAVVG----PYEING----------------LKRVDSRYLVVTSTNIFNF--AQDIDDDSFIKTLEIKKKQKKLLKNKNEALFMNNVIDKIKEIRK.......... 171
10 -15.4005xxb_L mol:protein length:134 Ribosomal protein eL14  ali model follow..  12  6..RYYQPGRLCVVQYGPDAGKLCFVVDIINQTRVLVDGAGVTGVKRQSMPVRYLKIPRSVRSATLKKALEKDDVIAKFNQSSWGKRRLAKEQRANMSDFDRFKLMVILKQRRKVMQQKLKSLKK...................... 134
11 -14.4003jbs_A mol:protein length:176 eL6  ali model follow..  25  34....LVPGTVLILLAGRFRGKRVVYLKHLEDNT-------LLISG----PFKVNG----------------LRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEANLFPEQQNKEIKAERVEDQKVV......... 141
12 -14.0005t5h_v mol:protein length:171 60S ribosomal protein L6  ali model follow..  21  5LRKSCKPGTIAIILAGRFRGRRVVILKQLPRN------GPLVISG----PMKYNG----------------IRRIDSRYIIATSTKVDIKVDVSGITPDIFKRPKQEKRVKSEGEFMGDKAKKAAEQKAKKTAKAAPKGIVSDAR. 126
13 -13.7003j7o_E mol:protein length:236 Ribosomal protein eL6  ali model follow..  21  92....ITPGTILIILTGRHRGKRVIFLKQLSSG--------LLVTGLNRVP---------------------LRRTHQKFVIATSTKIDISVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKVDQKA......... 200
14 -13.5005apo_E mol:protein length:176 60S RIBOSOMAL PROTEIN EL6  ali model follow..  25  34....LVPGTVLILLAGRFRGKRVVYLKHLEDNT-------LLISG----PFKVNG----------------LRRVNARYVIATSTKVSVEVNVEKFNVEYFAKEXXXXXXXXXXXXXXXXXXKEIKAERVEDQKVVDKALIAEIK. 150
15 -13.5005xxb_E mol:protein length:193 Ribosomal protein eL6  ali model follow..  21  36LRSSITPGTVLILLSGGHRGKRVVFLKQLAPS------GLLLVTGVNGVP---------------------LRRVNQRYVIATTTKVDISVDVSSIKDEQFGASKKEKFAERKLRKKQDEGMFVQQSDSKAKQA............ 146
16 -13.0003j92_E mol:protein length:284 eL6  ali model follow..  22  140....ITPGTILIILTGRHRGKRVIFLKQLSSG--------LLVTG----PLVLNR----------------LRRTHQKFVIATSTKIDISVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKVDQKA......... 248
17 -12.9004d5y_E mol:protein length:288 60S RIBOSOMAL PROTEIN EL6  ali model follow..  22  144....ITPGTILIILTGRHRGKRVVFLKQLASG--------LLVTG----PLVLNR----------------LRRTHQKFVIATSTKIDISVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKIDQKA......... 252
18 -12.8005xy3_M mol:protein length:128 Ribosomal protein L14, putative  ali model follow..  18  5..QFVEIGRVALINFGELVDKLAIIVDIVDDK-------RVLIDVLEFDAPR--------------------QTIPIQRLKLTDYVAKIQRNAAPEAAKAAAKDFIKQFYESAWGKQVIARKNKAQ.................... 101
19 -12.7005lzs_E mol:protein length:291 60S ribosomal protein L6  ali model follow..  22  147....ITPGTILIILTGRHRGKRVVFLKQLSSGL-------LLVTGLNRVP---------------------LRRTHQKFVIATSTKIDISVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKVDQKA......... 255
20 -12.7003jcs_F mol:protein length:195 ribosomal protein L6e  ali model follow..  24  33....CAPGVIAIILAGRFRGRRAVILKQLPHNG-------LVVSGYNGVP---------------------IRRIDSRYVIATSTKVDISSVDTAPITPEVFQRPKAEKLTKSEGDFMGDKQKARAEKA................. 133
21 -12.6005t2a_t mol:protein length:195 eL6  ali model follow..  19  29LRKSCAPGAIAIILAGRFRGRRAVILKQLPHN------GPLVVSGYNGVP---------------------IRRIDSRYVIATSTTVDISVDTASITAEVFQRPKAEKPTKSEGDFMGDKQKAKAEKAAKKTSKAGKKTLVSDAR. 150
22 -12.4005xy3_E mol:protein length:151 60S ribosomal protein L6, putative  ali model follow..  21  52TRANLKVGTVVIIVGGEHQGKRAVVVADQGAG--------VKVAG--------------------------VNEISQDYLIATSTSIDVA---ANATEAQVEAAAAKV---PEMVDYLKAPFTIKKGNR------------HLMKF 151
23 -12.0003jct_M mol:protein length:138 60S ribosomal protein L14-A  ali model follow..  19  13..RLVEVGRVVLIKKGQSAGKLAAIVEIIDQK-------KVLIDGPKAGVPR--------------------QAINLGQVVLTPLTFALPRGARTATVSKKWAAAAKKIAQRERRAALTERFQVMVLRKQ................ 126
24 -11.6003jcs_K mol:protein length:233 ribosomal protein L14e  ali model follow..  20  63..HYICAGRLVRILRGPRQDRVGVIVDIVDAN-------RVLVENPEDAKMW--------------------HVQNLKNVEPLKYCVSVSRNCSAKALKDALASSAARVEAKKACAASTERYQLRVARRS................ 177
25 -11.6003j79_N mol:protein length:165 60S ribosomal protein eL14  ali model follow..  18  23..RFVEPGRLCLIEYGPYAGKLCFIVDIVTIT-------RVIVDGAFITGVP--------------------MVIPLKRLKLLKERIKINKNCKSGFLRKTVNSTGKKMIIKKKRDEATERFQVYFAKRE................ 137
26 -11.2003j7o_M mol:protein length:213 Ribosomal protein eL14  ali model follow..  15  5..RFVEVGRVAYVSFGPHAGKLVAIVDVIDQN-------RALVDG----PCTQVRR----------------QAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATR............................... 90
27 -11.0004d5y_M mol:protein length:215 60S RIBOSOMAL PROTEIN EL14  ali model follow..  14  5..RFVEVGRVAYVSFGPHAGKLVAIVDVIDQN-------RALVDG----PCTQVRR----------------QAMPFKCMQLTDFILKFPHSAHQKYVRQAWQKADTKWAATRWAKKIEARERKAKMTDFDRFK............ 111
28 -10.9005lzs_M mol:protein length:218 Uncharacterized protein  ali model follow..  15  5..RFVEVGRVAYVSFGPHAGKLVAIVDVIDQN-------RALVDG----PCTRVRR----------------QAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATR............................... 90
29 -10.8005t5h_P mol:protein length:149 40S ribosomal protein L14  ali model follow..  17  1..NYIRAGRLVRIIRGPRQDRVGVVVDIIDGN-------RVLVEN------------ADKKMWRHV--------QNLKNVEPLKFSVELSRNCSTKTLKNVLAEKARRIAAKRAFARSTERYQLRVAKRS................ 115
30 -9.7604adx_7 mol:protein length:126 RPL14E  ali model follow..  23  5..KFVQVGRVVYINYGADKGKLAVIVNIINQN-------RILIDG---------------------------QVIPIRRVHLTKFQID-KIAKFDLTKKYAETSFAKKQAIKTKRANLGDRFRVMVLKKK................ 117
31 -9.7106d90_M mol:protein length:198 eL14  ali model follow..  16  5..RFVEVGRVAYVSFGPHAGKLVAIVDVIDQ-------NRALVDG----PCTRVRR----------------QAMPFKCMQLTDFILKFPHSARQKYVRKAWEKAAKKIEARERKAKMTDRYKVMKAKKM................ 118
32 -9.3702do3_A mol:protein length:69 Transcription elongation factor SPT5  ali model follow..  29  14LRKYFKMGDHVKVIAGRFEGDTGLIVRVEEN................................................................................................................... 44
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.