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Query: 3j79_I mol:protein length:221 60S ribosomal protein eL6, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTNTSNELKHYNVKGKKKVLVPVNAKKTINKKYFGRKVASKKKYVVQRKLRKSIEVGKVAIILTGKHMGKRCIITKILNSGLLAVVGPYEINGVPLKRVDSRYLVVTSTNIFNFENIAKLKDDFLNYAQDIDDDSFIKTLEIKKKQKKLLKNKNEALFMNNVIDKIKEIRKEDPKVQKLEGIQKDIGSLLKPEILKNKVFAHYLKSKFTLRNDMVLHKMKFLast
1 -107.0003j79_I mol:protein length:221 60S ribosomal protein eL6  ali model  100  1MTNTSNELKHYNVKGKKKVLVPVNAKKTINKKYFGRKVASKKKYVVQRKLRKSIEVGKVAIILTGKHMGKRCIITKILNSGLLAVVGPYEINGVPLKRVDSRYLVVTSTNIFNFENIAKLKDDFLNYAQDIDDDSFIKTLEIKKKQKKLLKNKNEALFMNNVIDKIKEIRKEDPKVQKLEGIQKDIGSLLKPEILKNKVFAHYLKSKFTLRNDMVLHKMKF 221
2 -81.3005xxb_E mol:protein length:193 Ribosomal protein eL6  ali model follow..  28  3................PTAAALAKKRLRTRKPKRQLYKSPAGAAKRMAKLRSSITPGTVLILLSGGHRGKRVVFLKQLAPGLLLVTGPFKVNGVPLRRVNQRYVIATTTKVDISG---------VDVSSIKDEQFGASKKEKFAERKLRKKQD------EGMFVQQSDSKAKQALPAQFKQLQDSVDKALLASLSKDKLLTQYLKTRFTLRGNMRPHEMKF 193
3 -81.1003jbs_A mol:protein length:176 eL6  ali model follow..  28  1...................MSAQKAPKWYPSEDVAAL-KKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEG---------VNVEKFNVEYFAKEKLTKKEKKEA----------------NLFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176
4 -81.0005t2a_t mol:protein length:195 eL6  ali model follow..  28  2........................AATKSAASAAKRKAAKKRKSPEYTTLRKSCAPGAIAIILAGRFRGRRAVILKQLPHGPLVVSGPMKYNGVPIRRIDSRYVIATSTTVDISS---------VDTASITAEVFQRPKAEKPTKSEGDFMGDKQKAKAEKAAKKTSKAGKKTLVSDARAQLQKKIDAALIAAIKKDAEKAGYLRSVFTVKPGDAPHRWNW 195
5 -80.0005apo_E mol:protein length:176 60S RIBOSOMAL PROTEIN EL6  ali model follow..  29  1...................MSAQKAPKWYPSEDVAAL-KKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEG---------VNVEKFNVEYFAKEXXXXXXXXXX----------------XXXXXXXXKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176
6 -79.9003j7o_E mol:protein length:236 Ribosomal protein eL6  ali model follow..  28  38.ATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISG---------VKIPKHLTDAYFKKKKLRKPR--------------HQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 236
7 -79.8003jcs_F mol:protein length:195 ribosomal protein L6e  ali model follow..  28  2........................AATKSAASAAKRKAAKSRKSPEYTTLRKSCAPGVIAIILAGRFRGRRAVILKQLPHNPLVVSGPMKYNGVPIRRIDSRYVIATSTKVDISS---------VDTAPITPEVFQRPKAEKLTKSEGDFMGDKQKARAEKAAKKTSKAGKKTPVSDARAQLQKKIDAALIAAIKKDAEKAGYLRSVFTVKPGDAPHRWNW 195
8 -78.7005t5h_v mol:protein length:171 60S ribosomal protein L6  ali model follow..  28  1.............................................EYTTLRKSCKPGTIAIILAGRFRGRRVVILKQLPRGPLVISGPMKYNGVPIRRIDSRYIIATSTKVDIKN---------VDVSGITPDIFKRPKQEKRVKSEGEFMGDKAKKAAEQKAKKTAKAAPKGIVSDARAQLQKKVDAALIEAIRKDPEKAGYLHSVFTIKPGDAPHRMRW 171
9 -76.4005lzs_E mol:protein length:291 60S ribosomal protein L6  ali model follow..  28  92LATVTKPVGGDKNGGTRVV-KLRKMPRYYPTEDVPRKLLSHGKKQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISG---------VKIPKHLTDAYFKKKKLRKPR--------------HQEGEIFDTEKEKYEITEQRKVDQKAVDSQILPKIKAVPQLQGYLRSVFALTNGVYPHKLVF 291
10 -74.7003j92_E mol:protein length:284 eL6  ali model follow..  27  85LATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISG---------VKIPKHLTDAYFKKKKLRKPR--------------HQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 284
11 -73.6004d5y_E mol:protein length:288 60S RIBOSOMAL PROTEIN EL6  ali model follow..  27  89LATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISN---------VKIPKHLTDAYFKKKKLRKPR--------------HQEGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF 288
12 -64.2005xy3_E mol:protein length:151 60S ribosomal protein L6, putative  ali model follow..  24  4.LLFISPIAKKDIKRPSWRGIPRISFTRPAVAAEVDPIAKPACNAKAVETRANLKVGTVVIIVGGEHQGKRAVVVADQGAGIVKVAGPV----VPVNEISQDYLIATSTSIDV--------------------------------------------------------------------AANATEAQVEAAAAKVPEMVDYLKAPFTIKKGNRIHLMKF 151
13 -29.2002joy_A mol:protein length:96 50S ribosomal protein L14e  ali model follow..  22  2...................................................PAIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQKGASDEEVKKKLEESNLTEYMKEKIKIRMPT............................................................................ 95
14 -21.1005xxb_L mol:protein length:134 Ribosomal protein eL14  ali model follow..  15  5..................................................TRYYQPGRLCVVQYGPDAGKLCFVVDIINQTRVLVDGA-GVTGVKRQSMPVRRIALTDQYLKIPRSVRSATLKKALEKDDVIAKFNQSSWGKRRLAKEQRANMSDF--------------DRFKLMVILKQRRKVMQQKLKSLKK.......................... 134
15 -20.6003j79_N mol:protein length:165 60S ribosomal protein eL14  ali model follow..  17  22..................................................KRFVEPGRLCLIEYGPYAGKLCFIVDIVTITRVIVDGA-FITGVPRMVIPLKRLKLLKERIKINKNCKSGFLRKTVNSTKVLEE-FNNSKLGKKMIIKKKRDEATDFERFQVYFAKRELKKKMTTIKNKKNGENKKVKKNVQKVKA......................... 165
16 -20.4003jct_M mol:protein length:138 60S ribosomal protein L14-A  ali model follow..  16  12..................................................WRLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGP---AGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAAVCEKWAASSWAKKIAQRERRAALTDF--------------ERFQVMVLRKQKRYTVKKALAKA............................ 138
17 -19.7005t5h_P mol:protein length:149 40S ribosomal protein L14  ali model follow..  8  3.....................................................IRAGRLVRIIRGPRQDRVGVVVDIIDGNRVLVENP-ADKKMWRHVQNLKNVEPLKFSVELSRNCSTKTLKNVLAEKKILEKYAATKSARRIAAKRAFARSTDF--------------ERYQLRVAKRSRAFWTRKVFDENDKKKP....................... 132
18 -19.5003jcs_K mol:protein length:233 ribosomal protein L14e  ali model follow..  10  62..................................................SHYICAGRLVRILRGPRQDRVGVIVDIVDANRVLVENP-EDAKMWRHVQNLKNVEPLKYCVSVSRNCSAKALKDALASSKALEKYAKTRTAARVEAKKACAASTDF--------------ERYQLRVARRSRAHWARKVFDEKDAKTP....................... 194
19 -19.4003j7o_M mol:protein length:213 Ribosomal protein eL14  ali model follow..  19  4..................................................RRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGP---TQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAK-WAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKLEVKKLQKAAL.................................... 135
20 -18.7005lzs_M mol:protein length:218 Uncharacterized protein  ali model follow..  18  4..................................................RRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGP---TRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIEARERKAKMTD.................................................................. 106
21 -18.6004d5y_M mol:protein length:215 60S RIBOSOMAL PROTEIN EL14  ali model follow..  19  4..................................................RRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGP---TQVRRQAMPFKCMQLTDFILKFPHSAHQKYVRQAWQKADINTK-WAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQKAALLKAS................................ 139
22 -18.3005xy3_M mol:protein length:128 Ribosomal protein L14, putative  ali model follow..  15  4..................................................KQFVEIGRVALINFGELVDKLAIIVDIVDDKRVLIDVL---FDAPRQTIPIQRLKLTDYVAKIQR---NAAPEAAKAAAKDFIKQFYESAWGKQVIARKNKAQMNDF-------------QRFKYAQLEAKRDALVAKELNN............................. 127
23 -17.5006d90_M mol:protein length:198 eL14  ali model follow..  19  4..................................................RRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGP---TRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTK-WAATRWAKKIEARERKAKMTDFD-------------RYKVMKAKKMRNRIIKNEVKKLQRA......................... 133
24 -17.4004adx_7 mol:protein length:126 RPL14E  ali model follow..  20  4..................................................NKFVQVGRVVYINYGADKGKLAVIVNIINQNRILIDGE----HIVRQVIPIRRVHLTKFQIDNVELNQRTVLLKKKIAKFDLTKKYAETSFAKKQAIKTKRANLGDFDR.............................................................. 108
25 -16.6005xxb_Y mol:protein length:146 Ribosomal protein eL27  ali model follow..  18  1.................................................MVKLLKSGRVVVVLNGRHAGKKGVVVNTWEGAFCLVAGPLKVHK--LKYINVNHLMPTRYTVSSD----------MDVKTMVPEDAMRTVDDRKAAKKGLKKIFYEKFTNPVNEKVGKVSK................................................... 135
26 -16.5003j7o_Z mol:protein length:136 Ribosomal protein eL27  ali model follow..  17  1.................................................MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDG-ALVAGPRKVTA--VKVYNYNHLMPTRYSVDIP-------------KTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLR................................................... 135
27 -16.5005xy3_Z mol:protein length:139 Ribosomal protein L27e, putative  ali model follow..  16  2...................................................SLLQAGRFVVMLQGRHAGKKAVVLAAYPEGTAIVMGPKKVTK--VKAVNFNHVMLTRHNVKDE-------DFFKKISVEKVVAALKDAPAKKALLTEYAAVLRQKYLNNKMA.......................................................... 131
28 -16.4003jct_Z mol:protein length:136 60S ribosomal protein L27-A  ali model follow..  19  1.................................................MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEG-ALVAGPLKVTK--IKVVNYNHLLPTRYTLDVE-------------KSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLR................................................... 135
29 -16.2003j79_1 mol:protein length:146 60S ribosomal protein eL27  ali model follow..  21  1.................................................MGKLLKPGKVIIILNGRRAGKKAVIVNTYEGQ-CLVAGPLKVNK--IKCINVNHILPTRYQVAND-------------IKSLASDDVLKSKNKKKEVKKLGKIFRDKFLEPVNKKTGEVSKD.................................................. 136
30 -16.0003jcs_Y mol:protein length:134 ribosomal protein L27e  ali model follow..  12  1.................................................MTKFLKPGKVVIVTAGRYAGHKAVIVQNSDIA-ALLAGPKKVVR--LRVVNHKHFLPTRYNVDMSK-------------ELRGKINVSDASKRSRSKRLVRHVFQARYNAGSSMWFFQRLR................................................... 133
31 -16.0005t5h_a mol:protein length:132 Ribosomal protein L27  ali model follow..  16  1...................................................KFLKPGKVVIVTSGRYAGKKAVIVQNTDSKSSLIAGPKKVVR--LRVVNHKHFLPTRYNMDLSR-------------ELRGRINVSDASKKAKSKQLVRKLFQARYNAGSNR.......................................................... 124
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang B, Jaroszewski L, Rychlewski L, Godzik A. Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies. Fold Des. 1997;2(5):307-17.