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Query: 3j79_Z mol:protein length:126 60S ribosomal protein uL24, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKFNKQKSSSRRKMRKAHFTAPAGLRRKIMSSKLSKELRLKYKTRSLPVRKDDEVLICRGHNHGREGKVVKINRKRYKIYVERVTREKVNGESTFIGIHPSNVVLTKLKVDKNRKKILDRKAAKENLast
1 -79.9003j79_Z mol:protein length:126 60S ribosomal protein uL24  ali model  100  1MKFNKQKSSSRRKMRKAHFTAPAGLRRKIMSSKLSKELRLKYKTRSLPVRKDDEVLICRGHNHGREGKVVKINRKRYKIYVERVTREKVNGESTFIGIHPSNVVLTKLKVDKNRKKILDRKAAKEN 126
2 -76.6005xxb_X mol:protein length:141 Ribosomal protein uL24  ali model follow..  62  1MKFSSQVSSSRRKSRKAHFSAPSSVRRKIMTAPLCKELRKKYNVRSLPIRKDDEVMVVRGHHHDREGKVTKVYRKKWVIHIERVTRDKANGETVTIGIHPSKVVITKAKLDKDRKALLERKSRATT 126
3 -75.7002ww9_L mol:protein length:127 60S RIBOSOMAL PROTEIN L26-A  ali model follow..  49  2AKQSLDVSSDRRKARKAYFTAPSSQRRVLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVITKLHLDKDRKALIQRKGGKLE 127
4 -74.6003j7o_Y mol:protein length:145 Ribosomal protein uL24  ali model follow..  61  1MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQ 127
5 -72.9005xy3_Y mol:protein length:138 Ribosomal protein L24, putative  ali model follow..  41  2VKTNPFVSSQARKVRKSYFNAKKDAKHVAMSAPLSKELQEANGIKRLPIRRDDEVMIFSGRMQNRTGKVTAVKLSEMRIYVDTFTTEKINGQAVSFPVHPSNVVITKLKMDKARKNLIELRRLGRD 127
6 -72.3005t5h_Z mol:protein length:113 60S ribosomal protein L26  ali model follow..  57  1........GSRRKARRAHFQAPSHVRRILMSAPLSKELRAKYNVRAMPVRKDDEVRVKRGAYKGREGKVTACYRLRWVIHIDKVNREKANGTTVPVGVHPSNVEITKLKLNHNRKAILERK..... 113
7 -71.8003jcs_W mol:protein length:143 ribosomal protein L24  ali model follow..  52  1..MASIKCGSRRKARRAHFQAPSHVRRVLMSAPLSKELRAKYNVRAMPVRKDDEVIVKRGTFKGREGKVTACYRLKWVILIDKVNREKANGSTVAVGIHPSNVEITKLKLTHHRKSILERKDRSSK 124
8 -71.7005t2a_X mol:protein length:143 uL24  ali model follow..  52  1..MVSIKCGSRRKARRAHFQAPSHVRRVLMSAPLSKELRAKYNVRAMPVRKDDEVIVKRGAFKGREGKVTACYRLKWVIHIDKVNREKANGSTVAVGIHPSNVEITKLKLTHHRKAILERKDRSSK 124
9 -54.2001s72_T mol:protein length:120 50S ribosomal protein L24P  ali model follow..  30  1......MSKQPDKQRKSQRRAPLHERHKQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLDLEDEKREARLESEDDSA 120
10 -21.9001nkw_S mol:protein length:115 50S ribosomal protein L24  ali model follow..  21  1.................................MPRPSAGSHHNDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKQRELALHASKVALVDPETGKATRVRKQIVDGKK. 103
11 -19.1005mlc_W mol:protein length:191 50S ribosomal protein L24, chloroplastic  ali model follow..  16  23.QRLFPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKP-NSLPKLHKRHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNFKTKH-IKIEAAIHSSNVMLILKEQEVADRVGHKILEDVRK 157
12 -18.3004wce_R mol:protein length:105 50S ribosomal protein L24  ali model follow..  29  1..............................................MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKETEAAIHVSNVQLLDPKTNEPTRVGYKFVDGKK. 90
13 -18.0005v7q_U mol:protein length:105 50S ribosomal protein L24  ali model follow..  35  1..............................................MKVHKGDTVLVISGKDKGAKGKVLQAYPDRNRVLVEGVNRIKKHTATQEAPIHVSNVMVV.................... 74
14 -18.0005o60_V mol:protein length:105 50S ribosomal protein L24  ali model follow..  36  1..............................................MKVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTATQEAPIHVSNVMVV.................... 74
15 -17.9003j3v_U mol:protein length:103 50S ribosomal protein L24  ali model follow..  24  1..............................................MHVKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNMVKKHSKNQEAPIHVSNVMPLDPKTGEVTRVGYKVEDGKK. 90
16 -17.6004v4i_S mol:protein length:110 50S ribosomal protein L24  ali model follow..  25  3............................................VKMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVREKEAPLHASKVRPICPACGKPTRVRKKFLENGKK 95
17 -17.4004ce4_Y mol:protein length:216 MRPL24  ali model follow..  16  1MRLSALLALASKVTLPPNYRSLSDKRKNPPGTRRRRVPVEPISDEDWHLFCGDKVEILEGKDAGKQGKVVQVIRQRNWVVVEGLNTHYRY-IPSEAPLLHNQVKLVDPTDRKPTDVEWRFTEAGE. 142
18 -17.4003j7z_U mol:protein length:104 50S ribosomal protein L24  ali model follow..  22  2.............................................AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKK. 92
19 -16.0005mmi_V mol:protein length:192 plastid ribosomal protein uL24c  ali model follow..  16  56..................................DCKPNSLPKLHKMHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNLKTKH-IKIEAAIHSSNVMLYSKEQEVASRVGHKILEDGRK 158
20 -15.4003j7y_V mol:protein length:216 uL24  ali model follow..  18  43...................................PVVVEPISDEDWYLFCGDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRY-IPSEAPLLHRQVKLVDPMDRKPTEIEWRFTEAGE. 142
21 -15.1003j6b_Q mol:protein length:297 54S ribosomal protein L40, mitochondrial  ali model follow..  9  27.........LPHSEKFIKKSTPEFMKSDLKEV---DEKTSFKSEKEWKFIPGDRVVVMSGASKGNIAVIKSFDKRTNSFILDENGPTKTV-ITIPVSILGKDLRLVADIDDEKTPGKTRTVAVRD. 153
22 -11.7002e6z_A mol:protein length:59 Transcription elongation factor SPT5  ali model follow..  20  2..........................................SSGSSGFQPGDNVEVCEGELINLQGKILSVDGNKITIMPK............................................ 41
23 -11.2002kvq_G mol:protein length:63 Transcription antitermination protein nusG  ali model follow..  16  7.............................................KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV------SIFGRATPVELDFSQV....................... 60
24 -11.0005ohq_A mol:protein length:111 Transcription elongation factor SPT5  ali model follow..  12  54...........................................LEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMD............................................ 92
25 -11.0004zn1_A mol:protein length:147 Transcription elongation factor Spt5  ali model follow..  19  85............................................IIENIEKGDVVEIIAGPFKGERAKVIRVDKHKEEVTLELENA----AVPIPITLPVEGVKIVSKHKD............... 147
26 -10.9003qqc_D mol:protein length:163 Transcription antitermination protein nusG  ali model follow..  16  88............................................AVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDAIVP----------------IPVTIKGDYVRLISKLQKEEA 153
27 -10.7002mi6_A mol:protein length:62 Transcription termination/antitermination protein NusG  ali model follow..  14  6.............................................EVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKV------SIFGRETPVELTFGQV....................... 59
28 -10.6002ckk_A mol:protein length:127 KIN17  ali model follow..  20  66...........................................LETVIPAPGKRILVLNGGYRGNEGTLESINEKTFSATIV............................................ 104
29 -10.5006duq_M mol:protein length:60 Transcription termination/antitermination protein NusG  ali model follow..  16  4.............................................KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV------SIFGRATPVELDFSQV....................... 57
30 -10.5002do3_A mol:protein length:69 Transcription elongation factor SPT5  ali model follow..  22  12...................................QELRKYF-------KMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHE....................................... 56
31 -10.5004ytl_A mol:protein length:99 Transcription elongation factor SPT5  ali model follow..  17  1................................................FQPGDRIEVLNGEQRGSKGIVTRTTKDIATIKLN............................................ 34
32 -10.5001nz9_A mol:protein length:58 TRANSCRIPTION ANTITERMINATION PROTEIN NUSG  ali model follow..  27  2.............................................QVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKV------TIFGRETPVELDFSQV....................... 55
33 -10.4001m1g_A mol:protein length:248 Transcription antitermination protein nusG  ali model follow..  17  167...................GKPVPLKEEEVQN-ILNQIKRGVKPSKVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTV------SIFGRMTPVELDFDQV....................... 245
34 -10.3005oho_A mol:protein length:113 Transcription elongation factor SPT5  ali model follow..  16  37........................VRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLF--RSFAFLHCKKLVENGG----FVCKTRHLVLA.................... 113
35 -9.2702e70_A mol:protein length:71 Transcription elongation factor SPT5  ali model follow..  19  21...................................................GQTVRISQGPYKGYIGVVKDATESTARVELH............................................ 51
36 -9.0502lq8_A mol:protein length:177 Transcription antitermination protein nusG  ali model follow..  25  120.............................................ELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKV------TIFGRETPVVLHVSEV....................... 173
37 -9.0304ytk_A mol:protein length:130 Transcription elongation factor SPT5  ali model follow..  23  1................................................LEEGSYVRIKRGIYKGDLAMVDQISENNLEVMLKIVPR........................................ 38
38 -9.0005xog_W mol:protein length:83 Spt4/5 complex component  ali model follow..  25  21...................................................NKTVKIRQGGYKGKIGIVKEANGDRFRVELH............................................ 51
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.