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Query: 3j7o_M mol:protein length:213 Ribosomal protein eL14, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKLEVKKLQKAALLKASPKKALAKGAAAAAAAAAAKVPVKKITTAGKKAPAQKAPAQKAAGQKAAPPPKAQKVQKPPAQKAPAPKASGEKALast
1 -87.7003j7o_M mol:protein length:213 Ribosomal protein eL14  ali model  100  1MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKLEVKKLQKAALLKASPKKALAKGAAAAAAAAAAKVPVKKITTAGKKAPAQKAPAQKAAGQKAAPPPKAQKVQKPPAQKAPAPKASGEKA 213
2 -78.5004d5y_M mol:protein length:215 60S RIBOSOMAL PROTEIN EL14  ali model follow..  85  1MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITSKKAPAQKVPAQKATGQKAAPAPKAQKGQKAPAQKAPAPKASGKKA 215
3 -75.9005lzs_M mol:protein length:218 Uncharacterized protein  ali model follow..  84  1MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIEARERKAKMTDFDRYKVMKAKKMRNRIIKNEVKKLQRAAPKKAPVAKGAVAAAAAAAKVPAKKATAAGKKAAAQKAPAQKAPAQKAAGQKAAQPPKAQKGQKPPAQKAPAPKASGKKA 218
4 -72.5006d90_M mol:protein length:198 eL14  ali model follow..  90  1MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIEARERKAKMTDFDRYKVMKAKKMRNRIIKNEVKKLQRAALLKASPKKAPVAKGAVAAAAAAAKVPAKKATAAGK---------------KAAQPPKAQKGQKPPAQKAPAPKASGKKA 198
5 -66.4003jcs_K mol:protein length:233 ribosomal protein L14e  ali model follow..  21  59MVKSHYICAGRLVRILRGPRQDRVGVIVDIVDANRVLVENPEDKMWRHVQNLKNVEPLKYCVSVSRNCSAKALKDALASSKALEKYAKTRTAARVEAKKACAASTDFERYQLRVARRSRAHWARKVFDEKDAKTPVSWHKVALKKMQKKAAKMDSTEGAKRRMQKAIAARKAKK....................................... 233
6 -63.7003j79_N mol:protein length:165 60S ribosomal protein eL14  ali model follow..  26  19LLFKRFVEPGRLCLIEYGPYAGKLCFIVDIVTITRVIVDGAFTGVPRMVIPLKRLKLLKERIKINKNCKSGFLRKTVNSTKVLEEFNNSKLGKKMIIKKKRDEATDFERFQVYFAKRELKKKMTTIKNKKNGENKKVKKNVQKVKA................................................................... 165
7 -62.8003jct_M mol:protein length:138 60S ribosomal protein L14-A  ali model follow..  43  9ASNWRLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAAVCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAKA................................................................................... 138
8 -61.2005xy3_M mol:protein length:128 Ribosomal protein L14, putative  ali model follow..  34  1MPFKQFVEIGRVALINFGELVDKLAIIVDIVDDKRVLIDVLEFDAPRQTIPIQRLKLTDYVAKIQRNAAPEAAKAAAK--DFIKQFYESAWGKQVIARKNKAQMNDFQRFKYAQLEAKRDALVAKELNN.................................................................................... 127
9 -60.4005t5h_P mol:protein length:149 40S ribosomal protein L14  ali model follow..  23  1....NYIRAGRLVRIIRGPRQDRVGVVVDIIDGNRVLVENPAKKMWRHVQNLKNVEPLKFSVELSRNCSTKTLKNVLAEKKILEKYAATKSARRIAAKRAFARSTDFERYQLRVAKRSRAFWTRKVFDENDKKKPVSWHKVALKKLQKNAKK............................................................. 149
10 -58.5005xxb_L mol:protein length:134 Ribosomal protein eL14  ali model follow..  44  3.LFTRYYQPGRLCVVQYGPDAGKLCFVVDIINQTRVLVDGAVTGVKRQSMPVRRIALTDQYLKIPRSVRSATLKKALEKDDVIAKFNQSSWGKRRLAKEQRANMSDFDRFKLMVILKQRRKVMQQKLKSLKK................................................................................. 134
11 -57.6004adx_7 mol:protein length:126 RPL14E  ali model follow..  39  1MVFNKFVQVGRVVYINYGADKGKLAVIVNIINQNRILIDGE--HIVRQVIPIRRVHLTKFQINVELNQRTVLLKKKIAKFDLTKKYAETSFAKKQAIKTKRANLGDFDRFRVMVLKKKLARTSAKS....................................................................................... 125
12 -36.8002joy_A mol:protein length:96 50S ribosomal protein L14e  ali model follow..  28  2....PAIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKTGVKRRRVNILHLEPTDKKIDIQKGASDEEVKKKLEESNLTEYMKEKIKIRMPT..................................................................................................................... 95
13 -19.4003j79_I mol:protein length:221 60S ribosomal protein eL6  ali model follow..  19  51...RKSIEVGKVAIILTGKHMGKRCIITKILNSGLLAVVGP-NGVPLKRVDSRYLVVTSTNIFNFENIAKLKDDFLNYAQDIDDDFIKTLEIKKKQKKLLKNKNEALFMNNVIDKIKEIRKEDPKVQKLEGIQKD.............................................................................. 185
14 -15.4005xy3_E mol:protein length:151 60S ribosomal protein L6, putative  ali model follow..  21  52..TRANLKVGTVVIIVGGEHQGKRAVVVADQGAGIVKVAGPVVPVNE--ISQDYLIATSTSIDVAANATEAQVEAAAAKVPEMVDYLKAPFTIK....................................................................................................................... 141
15 -13.3003jbs_A mol:protein length:176 eL6  ali model follow..  17  31...RASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEA-QNKEIKAERVEDQKVVDKALIAEIKKTP.............................................................................................. 153
16 -12.7005apo_E mol:protein length:176 60S RIBOSOMAL PROTEIN EL6  ali model follow..  18  31...RASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEXXXXXXXXXX-XXKEIKAERVEDQKVVDKALIAEIKKTP.............................................................................................. 153
17 -11.7005t5h_a mol:protein length:132 Ribosomal protein L27  ali model follow..  21  1....KFLKPGKVVIVTSGRYAGKKAVIVQNTDSKHSLIAGPKKVVRGRVVNHKHFLPTRYNMDLSRELRGRINVSDASKKAKSKQLVRKLFQARYNAGSNR................................................................................................................ 124
18 -11.5003j7o_E mol:protein length:236 Ribosomal protein eL6  ali model follow..  18  89...RASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVP.............................................................................................. 213
19 -11.3005t5h_v mol:protein length:171 60S ribosomal protein L6  ali model follow..  13  5..LRKSCKPGTIAIILAGRFRGRRVVILKQLPRNGPLISGPMNGVPIRRIDSRYIIATSTKVDIKNVDVSGITPDIFKRPKQEKRVKSEGEFMGDKAKKAAEQKAKKPKGIVSDARAQLQKKVDAA....................................................................................... 136
20 -11.2005xxb_Y mol:protein length:146 Ribosomal protein eL27  ali model follow..  19  3....KLLKSGRVVVVLNGRHAGKKGVVVNTWEGSKCLVAGIEKAPLKKYINVNHLMPTRYTVSSDMDVKTMVPEDAMRTVDDRKA................................................................................................................................ 109
21 -11.2003j79_1 mol:protein length:146 60S ribosomal protein eL27  ali model follow..  15  3....KLLKPGKVIIILNGRRAGKKAVIVNTYEGQYCLVAGPLKVNKSKCINVNHILPTRYQVANDFDIKSLASDDVLKSKNKKKEVKKLG........................................................................................................................... 115
22 -11.1003jcs_Y mol:protein length:134 ribosomal protein L27e  ali model follow..  23  3....KFLKPGKVVIVTAGRYAGHKAVIVQNSDIARALLAGPKKVVRGRVVNHKHFLPTRYNVDMSKELRGKINVSDASKRSRSKRLVRHVFQARYNAGSSM................................................................................................................ 126
23 -11.0005xxb_E mol:protein length:193 Ribosomal protein eL6  ali model follow..  13  37...RSSITPGTVLILLSGGHRGKRVVFLKQLAPSGLLVTGPFNGVPLRRVNQRYVIATTTKVDISGVDVSSIKDEQFGASKKEKFAERKL-RKKQDEGMFVQQSDSKAKQALPAQFKQLQDSVDKA....................................................................................... 161
24 -10.9005xy3_Z mol:protein length:139 Ribosomal protein L27e, putative  ali model follow..  19  2....SLLQAGRFVVMLQGRHAGKKAVVLAAYPEGYAIVMGIEKYPKKKAVNFNHVMLTRHNVKDE-------DFFKKISVEKVVAALKDAPAKKALLTEYAAVLRQ........................................................................................................... 123
25 -10.9003jct_Z mol:protein length:136 60S ribosomal protein L27-A  ali model follow..  21  3....KFLKAGKVAVVVRGRYAGKKVVIVKPHDEGHALVAGPLKVTKKKVVNYNHLLPTRYTLDVE-----------AFKSVVSTETFEQPSQREEAKKVVKKAFE--ERHQAGKNQ................................................................................................. 128
26 -10.8003j7o_Z mol:protein length:136 Ribosomal protein eL27  ali model follow..  25  3....KFMKPGKVVLVLAGRYSGRKAVIVKNIDDGHALVAGPRKVTAAKVYNYNHLMPTRYSVDIP-----------LDKTVVNKDVFRDPALKRKARREAKVKFE--ERYKTGKNK................................................................................................. 128
27 -10.5003j92_E mol:protein length:284 eL6  ali model follow..  18  137...RASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGP-NRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQE-EKYEISEQRKVDQKAVDSQILRRIKAVP.............................................................................................. 261
28 -10.3005t2a_t mol:protein length:195 eL6  ali model follow..  15  30...RKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVSGPMNGVPIRRIDSRYVIATSTTVDISSVDTASITAEVFQRPKAEKPTKSEGDFMGDKQKAKAEKAAKKKKTLVSDARAQLQKKIDAA....................................................................................... 160
29 -10.2004rco_A mol:protein length:295 Putative uncharacterized protein  ali model follow..  18  3...........................................................................................................................SSENLYFQGTTLSSTKVEAPQSTPPSTKIEAPQSKPNATTPPSTKVEAPQQTANATTPPSTKVTTPPSTNTPQPMQSTKSDTPQSPTTKQ 92
30 -9.9506b1t_X mol:protein length:217 Pre-protein VI  ali model follow..  10  32...............................................................................QMLRDKLKEQNFQQKVVLASGISGVVDLANQAVQNKINSKLDPRPPVEEPPPAVETVSPEGRGEKRPRPDREETLVTQIDEPPSYEEALKQGLPTTRPIAPMATGVLGQHTPVTLDLPPPADTQQKPVLPGPTA 167
31 -9.9304d5y_E mol:protein length:288 60S RIBOSOMAL PROTEIN EL6  ali model follow..  20  141...RASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGP-NRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKIFDTEKEKYEITEQRKIDQKAVDSQILPKIKA................................................................................................ 263
32 -9.6405lzs_E mol:protein length:291 60S ribosomal protein L6  ali model follow..  20  144...RASITPGTILIILTGRHRGKRVVFLKQLSSGLLLVTGPLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKIFDTEKEKYEITEQRKVDQKAVDSQILPKIKA................................................................................................ 266
33 -9.6003jcs_F mol:protein length:195 ribosomal protein L6e  ali model follow..  14  30...RKSCAPGVIAIILAGRFRGRRAVILKQLPHNGPLVSGPMNGVPIRRIDSRYVIATSTKVDISSVDTAPITPEVFQRPKAEKLTKSEGDFMGDKQKARAEKAAKKKKTPVSDARAQLQKKIDAA....................................................................................... 160
34 -9.5504fe8_A mol:protein length:452 Maltose-binding periplasmic protein,Huntingtin  ali model follow..  12  363................................................................................................................AAQTNAAAMATLEKLMKAFESLKSFQQQQQQQHQHQHQQQQQQQQQQQQQQQQQQQQQQQQQQQPPPPPP-----PPPPPQLPQPPPQAQPLLPQ...... 452
35 -9.2206az1_Y mol:protein length:159 ribosomal protein S21e  ali model follow..  20  80..................................................................................................................................RGIMRIKTGKPKRVSKSKSKKPTAGAAGQKGARPPAQKGARPSGQKGARPPAQKGARPPAQKGARPPAQKGAAPARKNRA... 159
36 -9.0002kpy_A mol:protein length:108 Major pollen allergen Art v 1  ali model follow..  17  38...........................................................................................................................................HKREAGKESCFCYFDCSKSPPGATPAPPGAAPPPAAGGSPSPPADGGSPPPPADGGSPPVDGGSPPPPST.... 107
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang B, Jaroszewski L, Rychlewski L, Godzik A. Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies. Fold Des. 1997;2(5):307-17.