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Query: 3j7o_Y mol:protein length:145 Ribosomal protein uL24, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .
# Score Template Links and tools%idFirst MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETIEKMQELast
1 -84.7003j7o_Y mol:protein length:145 Ribosomal protein uL24  ali model  100  1MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETIEKMQE 145
2 -75.5005xxb_X mol:protein length:141 Ribosomal protein uL24  ali model follow..  64  1MKFSSQVSSSRRKSRKAHFSAPSSVRRKIMTAPLCKELRKKYNVRSLPIRKDDEVMVVRGHHHDR-EGKVTKVYRKKWVIHIERVTRDKANGETVTIGIHPSKVVITKAKLDKDRKALLERKSRATTKGKYTEKDVAMS...... 138
3 -74.6003j79_Z mol:protein length:126 60S ribosomal protein uL24  ali model follow..  61  1MKFNKQKSSSRRKMRKAHFTAPAGLRRKIMSSKLSKELRLKYKTRSLPVRKDDEVLICRGHNHGR-EGKVVKINRKRYKIYVERVTREKVNGESTFIGIHPSNVVLTKLKVDKNRKKILDRKAAKEN.................. 126
4 -73.7005t2a_X mol:protein length:143 uL24  ali model follow..  57  1..MVSIKCGSRRKARRAHFQAPSHVRRVLMSAPLSKELRAKYNVRAMPVRKDDEVIVKRGAFKGR-EGKVTACYRLKWVIHIDKVNREKANGSTVAVGIHPSNVEITKLKLTHHRKAILERKDRSSKSDKGKGKISAADKAMQQ. 141
5 -73.7003jcs_W mol:protein length:143 ribosomal protein L24  ali model follow..  57  1..MASIKCGSRRKARRAHFQAPSHVRRVLMSAPLSKELRAKYNVRAMPVRKDDEVIVKRGTFKGR-EGKVTACYRLKWVILIDKVNREKANGSTVAVGIHPSNVEITKLKLTHHRKSILERKDRSSKSDKGKGKISAADKAMQQ. 141
6 -73.5005xy3_Y mol:protein length:138 Ribosomal protein L24, putative  ali model follow..  40  2VKTNPFVSSQARKVRKSYFNAKKDAKHVAMSAPLSKELQEANGIKRLPIRRDDEVMIFSGRMQNR-TGKVTAVKLSEMRIYVDTFTTEKINGQAVSFPVHPSNVVITKLKMDKARKNLIELRRLGRDQILAKLGHKKQ....... 138
7 -73.1002ww9_L mol:protein length:127 60S RIBOSOMAL PROTEIN L26-A  ali model follow..  51  2AKQSLDVSSDRRKARKAYFTAPSSQRRVLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQ-EGKISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVITKLHLDKDRKALIQRKGGKLE.................. 127
8 -68.5005t5h_Z mol:protein length:113 60S ribosomal protein L26  ali model follow..  66  1........GSRRKARRAHFQAPSHVRRILMSAPLSKELRAKYNVRAMPVRKDDEVRVKRGAYKGR-EGKVTACYRLRWVIHIDKVNREKANGTTVPVGVHPSNVEITKLKLNHNRKAILERK....................... 113
9 -52.5001s72_T mol:protein length:120 50S ribosomal protein L24P  ali model follow..  30  1......MSKQPDKQRKSQRRAPLHERHKQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGE-EGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLDLEDEKREARLESEDDSA.................. 120
10 -19.4001nkw_S mol:protein length:115 50S ribosomal protein L24  ali model follow..  22  1.................................MPRPSAGSHHNDKLHFKKGDTVIVLSGKHKGQ-TGKVLLALPRDQKVVVEGVNVITKNVKQRELALHASKVALVDPETGKATR............................. 93
11 -17.7005mlc_W mol:protein length:191 50S ribosomal protein L24, chloroplastic  ali model follow..  14  23.QRLFPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKP-NSLPKLHKRHVKVGDTVKVISGGEKGK-IGEISKIHKHNSTVIIKDLNFKTKH-IKIEAAIHSSNVMLILKEQEVADRVGHKILEDVRKV................. 158
12 -15.8005v7q_U mol:protein length:105 50S ribosomal protein L24  ali model follow..  36  1..............................................MKVHKGDTVLVISGKDKGA-KGKVLQAYPDRNRVLVEGVNRIKKHTATQEAPIHVSNVMVV...................................... 74
13 -15.8004ce4_Y mol:protein length:216 MRPL24  ali model follow..  14  1MRLSALLALASKVTLPPNYRSLSDKRKNPPGTRRRRVPVEPISDEDWHLFCGDKVEILEGKDAGK-QGKVVQVIRQRNWVVVEGLNTHYRY-IPSEAPLLHNQVKLVDPTDRKPTDVEWRFTEAGERV................. 144
14 -15.8005o60_V mol:protein length:105 50S ribosomal protein L24  ali model follow..  34  1..............................................MKVHKGDTVLVISGKDKGA-KGKVLVAYPDRNKVLVEGVNRIKKHTATQEAPIHVSNVMVV...................................... 74
15 -15.7004wce_R mol:protein length:105 50S ribosomal protein L24  ali model follow..  31  1..............................................MHIKKGDNVKVIAGKDKGK-EGKVIATLPKKDRVVVEGVNIMKKHQKETEAAIHVSNVQLLDPKTNEPTR............................. 80
16 -15.4004v4i_S mol:protein length:110 50S ribosomal protein L24  ali model follow..  28  3............................................VKMHVKKGDTVLVASGKYKGR-VGKVKEVLPKKYAVIVEGVNIVKKAVREKEAPLHASKVRPICPACGKPTRVRKKFLENGKKI................. 96
17 -15.3003j3v_U mol:protein length:103 50S ribosomal protein L24  ali model follow..  29  1..............................................MHVKKGDKVMVISGKDKGK-QGTILAAFPKKDRVLVEGVNMVKKHSKNQEAPIHVSNVMPL...................................... 71
18 -14.8003j7z_U mol:protein length:104 50S ribosomal protein L24  ali model follow..  30  2.............................................AAKIRRDDEVIVLTGKDKGK-RGKVKNVLSSGKVIVEGINLVKKHQKPEKEAAIQVSNVAIFNAATGKADR............................. 82
19 -14.5005mmi_V mol:protein length:192 plastid ribosomal protein uL24c  ali model follow..  17  56..................................DCKPNSLPKLHKMHVKVGDTVKVISGGEKGK-IGEISKIHKHNSTVIIKDLNLKTKH-IKIEAAIHSSNVMLYSKEQEVASRVGHKILEDGRKV................. 159
20 -13.9003j7y_V mol:protein length:216 uL24  ali model follow..  14  42..................................RPVVVEPISDEDWYLFCGDTVEILEGKDAGK-QGKVVQVIRQRNWVVVGGLNTHYRY-IPSEAPLLHRQVKLVDPMDRKPTEIEWRFTEAGERV................. 144
21 -13.4003j6b_Q mol:protein length:297 54S ribosomal protein L40, mitochondrial  ali model follow..  12  27.........LPHSEKFIKKSTPEFMKSDLKEVDEKTSFKS---EKEWKFIPGDRVVVMSGASKGN-IAVIKSFDKRTNSFILDENGPTKTV-ITIPVSILGKDLRLV...................................... 134
22 -9.6802vc8_A mol:protein length:84 ENHANCER OF MRNA-DECAPPING PROTEIN 3  ali model follow..  15  9...................................................GSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDITELKI.................................... 66
23 -9.1505ohq_A mol:protein length:111 Transcription elongation factor SPT5  ali model follow..  12  54...........................................LEPITPTKNNKVKVILGEDREA-TGVLLSIDGEDGIVRMD.............................................................. 92
24 -9.0302e6z_A mol:protein length:59 Transcription elongation factor SPT5  ali model follow..  25  2..........................................SSGSSGFQPGDNVEVCEGELIN-LQGKILSVDGNKITIMPK.............................................................. 41
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35