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Query: 3j7o_Z mol:protein length:136 Ribosomal protein eL27, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .
# Score Template Links and tools%idFirst MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRFLast
1 -88.0003j7o_Z mol:protein length:136 Ribosomal protein eL27  ali model  100  1MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
2 -87.0003jct_Z mol:protein length:136 60S ribosomal protein L27-A  ali model follow..  55  1MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136
3 -83.8003jcs_Y mol:protein length:134 ribosomal protein L27e  ali model follow..  49  1MTKFLKPGKVVIVTAGRYAGHKAVIVQNSDIATKERPYGRALLAGIKKYPKKVVRGMSKQTIARRSQVGVFLRVVNHKHFLPTRYNVDMS--KELRGKINVSDASKRSRSKRLVRHVFQARYNAGSSMWFFQRLRF 134
4 -81.9005t5h_a mol:protein length:132 Ribosomal protein L27  ali model follow..  45  1..KFLKPGKVVIVTSGRYAGKKAVIVQNTDSKSKERPYGHSLIAGMKKYPKKVVRGMSKRTIQRRSRVGVFLRVVNHKHFLPTRYNMDLS--RELRGRINVSDASKKAKSKQLVRKLFQARYNAGSNRWFFQRLRF 132
5 -80.7005xy3_Z mol:protein length:139 Ribosomal protein L27e, putative  ali model follow..  32  2..SLLQAGRFVVMLQGRHAGKKAVVLAAYPEGTEDRKFPYAIVMGIEKYPKKVTKDMPTEVLVKKTQVKLFVKAVNFNHVMLTRHNVKDEDFFKKISVEKVVAAPAKKALLTEYAAVLRQKYLNNKMAWFFKPLQF 139
6 -78.8003j79_1 mol:protein length:146 60S ribosomal protein eL27  ali model follow..  44  1MGKLLKPGKVIIILNGRRAGKKAVIVNTYEGQTRERPYSYCLVAGIEKHPLKVNKSMTKKKIVKRSKVKAFIKCINVNHILPTRYQVANDFDIKSLASDDVLKSKNKKKEVKKLGKIFRDKFLEPVNKFLHKKLYF 146
7 -76.7005xxb_Y mol:protein length:146 Ribosomal protein eL27  ali model follow..  42  1MVKLLKSGRVVVVLNGRHAGKKGVVVNT-WEGSKERQFAFCLVAGIEKAPLKVHKKMPAKKIEKRMRVKPFLKYINVNHLMPTRYTVSSDMDKTMVPEDAMRTVDDRKAAKKGLKKIFYEKFTNPVNEFLRKKLRF 146
8 -18.2002joy_A mol:protein length:96 50S ribosomal protein L14e  ali model follow..  27  2..PAIEVGRICVKVKGREAGSKCVIVDIIDDN-------FVLVTG-----------------KDITGVKR--RRVNILHLEPTDKKIDI---QKGASDEEVKKKLEESNLTEYMKEKIKIR............... 92
9 -16.5003j79_I mol:protein length:221 60S ribosomal protein eL6  ali model follow..  17  50LRKSIEVGKVAIILTGKHMGKRCIITKILNSG--------LAVVG----PYEING----------------LKRVDSRYLVVTSTNIFNF--AQDIDDDSFIKTLEIKKKQKKLLKNKNEALFMNNVI........ 163
10 -16.2005xxb_L mol:protein length:134 Ribosomal protein eL14  ali model follow..  13  6..RYYQPGRLCVVQYGPDAGKLCFVVDIINQTRVLVDGAGVTGVKRQSMPVRYLKIPRSVRSATLKKALEKDDVIAKFNQSSWGKRRLAKEQRANMSDDRFKLMVILKQRRKVMQQKLKSLKK............. 134
11 -14.0005xy3_E mol:protein length:151 60S ribosomal protein L6, putative  ali model follow..  23  52TRANLKVGTVVIIVGGEHQGKRAVVVADQGAG--------VKVAG--------------------------VNEISQDYLIATSTSIDVA--ANATEAQVEAAAAKVPEMVDYLKAPFTIKKGNRIHLMKF..... 151
12 -13.8003jbs_A mol:protein length:176 eL6  ali model follow..  23  30LRASLVPGTVLILLAGRFRGKRVVYLKHLEDNT-------LLISG----PFKVNG----------------LRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEANLFPEQQN............. 127
13 -13.4005t5h_v mol:protein length:171 60S ribosomal protein L6  ali model follow..  21  5LRKSCKPGTIAIILAGRFRGRRVVILKQLPRN------GPLVISG----PMKYNG----------------IRRIDSRYIIATSTKVDIKNVDVSGITPDIFKRPKQEKRVKSEGEFMGDKAKKAAEQ........ 108
14 -12.6005apo_E mol:protein length:176 60S RIBOSOMAL PROTEIN EL6  ali model follow..  22  30LRASLVPGTVLILLAGRFRGKRVVYLKHLEDNT-------LLISG----PFKVNG----------------LRRVNARYVIATSTKVSVEGVNKFNVEYFAKEXXXXXXXXXXXXXXXXXXKEIKAER........ 134
15 -12.4005xxb_E mol:protein length:193 Ribosomal protein eL6  ali model follow..  22  36LRSSITPGTVLILLSGGHRGKRVVFLKQLAPS------GLLLVTGVNGVP---------------------LRRVNQRYVIATTTKVDISGVDVSSIKDEQFGASKKEKFAERKLRKKQDE............... 132
16 -12.3003jcs_F mol:protein length:195 ribosomal protein L6e  ali model follow..  23  29LRKSCAPGVIAIILAGRFRGRRAVILKQLPHNG-------LVVSGYNGVP---------------------IRRIDSRYVIATSTKVDISSVDTAPITPEVFQRPKAEKLTKSEGDFMGDKQKARAEK........ 132
17 -12.0003j7o_E mol:protein length:236 Ribosomal protein eL6  ali model follow..  23  88LRASITPGTILIILTGRHRGKRVIFLKQLSSG--------LLVTG----PLVLNR----------------LRRTHQKFVIATSTKIDISGVK----PKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQR. 194
18 -12.0005t2a_t mol:protein length:195 eL6  ali model follow..  23  29LRKSCAPGAIAIILAGRFRGRRAVILKQLPHN------GPLVVSGYNGVP---------------------IRRIDSRYVIATSTTVDISSVDTASITAEVFQRPKAEKPTKSEGDFMGDKQKAKAEK........ 132
19 -11.5004d5y_E mol:protein length:288 60S RIBOSOMAL PROTEIN EL6  ali model follow..  25  140LRASITPGTILIILTGRHRGKRVVFLKQLASG--------LLVTG----PLVLNR----------------LRRTHQKFVIATSTKIDISNVK----PKHLTDAYFKKKKLRKPRHQEGEIFDTEKEK........ 239
20 -11.5003jct_M mol:protein length:138 60S ribosomal protein L14-A  ali model follow..  20  13..RLVEVGRVVLIKKGQSAGKLAAIVEIIDQK-------KVLIDGPKAGVPR--------------------QAINLGQVVLTPLTFALPWAAAAVCEKWAASSWAKKIAQRERRAALTERFQVMVLR........ 124
21 -11.5003j92_E mol:protein length:284 eL6  ali model follow..  18  136LRASITPGTILIILTGRHRGKRVIFLKQLSSG--------LLVTG----PLVLNR----------------LRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKY.......... 236
22 -11.1005lzs_E mol:protein length:291 60S ribosomal protein L6  ali model follow..  25  143LRASITPGTILIILTGRHRGKRVVFLKQLSSG--------LLVTG----PLSLNR----------------LRRTHQKFVIATSTKIDI---SGVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEK........ 242
23 -11.1005xy3_M mol:protein length:128 Ribosomal protein L14, putative  ali model follow..  19  5..QFVEIGRVALINFGELVDKLAIIVDIVDDK-------RVLIDVLEFDAPR--------------------QTIPIQRLKLTDYVAKIQ-AAPEAAKAAAKDFIKQFYESAWGKQVIARKNKAQMNDF....... 105
24 -11.1003jcs_K mol:protein length:233 ribosomal protein L14e  ali model follow..  19  63..HYICAGRLVRILRGPRQDRVGVIVDIVDAN-------RVLVENPEDAKMW--------------------HVQNLKNVEPLKYCVSVSLASSKALEKYAKTRTAARVEAKKACAASTERYQLRVAR........ 175
25 -11.0003j79_N mol:protein length:165 60S ribosomal protein eL14  ali model follow..  17  23..RFVEPGRLCLIEYGPYAGKLCFIVDIVTIT-------RVIVDGAFITGVP--------------------MVIPLKRLKLLKERIKINVNSTKVLEEFNNSKLGKKMIIKKKRDEATERFQVYFAK........ 135
26 -10.8003j7o_M mol:protein length:213 Ribosomal protein eL14  ali model follow..  25  5..RFVEVGRVAYVSFGPHAGKLVAIVDVIDQN-------RALVDG----PCTQVRR----------------QAMPFKCMQLTDFILKFPWEKADINAKWAATRWAKKIEAREKKAKMTDRYKVMKAR........ 116
27 -10.6004d5y_M mol:protein length:215 60S RIBOSOMAL PROTEIN EL14  ali model follow..  27  5..RFVEVGRVAYVSFGPHAGKLVAIVDVIDQN-------RALVDG----PCTQVRR----------------QAMPFKCMQLTDFILKFP.............................................. 65
28 -10.5005lzs_M mol:protein length:218 Uncharacterized protein  ali model follow..  23  5..RFVEVGRVAYVSFGPHAGKLVAIVDVIDQN-------RALVDG----PCTRVRR----------------QAMPFKCMQLTDFILKFPWEKADINTKWAATRWAKKIEARERKAKMTD................ 106
29 -10.2005t5h_P mol:protein length:149 40S ribosomal protein L14  ali model follow..  20  1..NYIRAGRLVRIIRGPRQDRVGVVVDIIDGN-------RVLVENPADKKMW--------------------HVQNLKNVEPLKFSVELSLAEKKILEKYAATKSARRIAAKRAFARSTERYQLRVAK........ 113
30 -9.6602do3_A mol:protein length:69 Transcription elongation factor SPT5  ali model follow..  35  14LRKYFKMGDHVKVIAGRFEGDTGLIVRVEEN......................................................................................................... 44
31 -9.6004adx_7 mol:protein length:126 RPL14E  ali model follow..  40  5..KFVQVGRVVYINYGADKGKLAVIVNIINQN........................................................................................................ 34
32 -9.1605v7q_U mol:protein length:105 50S ribosomal protein L24  ali model follow..  20  3....VHKGDTVLVISGKDKGAKGKVLQAYPDRNR------VLVEGVNRIKKHTAISTTQRGARSGGIVT................................................................... 61
33 -9.0505o60_V mol:protein length:105 50S ribosomal protein L24  ali model follow..  18  3....VHKGDTVLVISGKDKGAKGKVLVAYPDRNK------VLVEGVNRIKKHTAVSANERGASSGGIVTQ-IHVSNVMVVDSD..................................................... 77
34 -9.0106d90_M mol:protein length:198 eL14  ali model follow..  27  5..RFVEVGRVAYVSFGPHAGKLVAIVDVIDQN-------RALVDG----PCTRVRR----------------QAMPFKCMQLTDFILKFP.............................................. 65

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 2 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.