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Query: 3jcs_F mol:protein length:195 ribosomal protein L6e, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAATKSAASAAKRKAAKKVSRKSPEYTTLRKSCAPGVIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSRYVIATSTKVDISSVDTAPITPEVFQRPKAEKLTKSEGDFMGDKQKARAEKAAKKTSKAGKKTPVSDARAQLQKKIDAALIAAIKKDAQGKEKAGYLRSVFTVKPGDAPHRWNWLast
1 -108.0003jcs_F mol:protein length:195 ribosomal protein L6e  ali model  100  1MAATKSAASAAKRKAAKKVSRKSPEYTTLRKSCAPGVIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSRYVIATSTKVDISSVDTAPITPEVFQRPKAEKLTKSEGDFMGDKQKARAEKAAKKTSKAGKKTPVSDARAQLQKKIDAALIAAIKKDAQGKEKAGYLRSVFTVKPGDAPHRWNW 195
2 -106.0005t2a_t mol:protein length:195 eL6  ali model follow..  96  1MAATKSAASAAKRKAAKKVSRKSPEYTTLRKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSRYVIATSTTVDISSVDTASITAEVFQRPKAEKPTKSEGDFMGDKQKAKAEKAAKKTSKAGKKTLVSDARAQLQKKIDAALIAAIKKDAQGKEKAGYLRSVFTVKPGDAPHRWNW 195
3 -99.9005t5h_v mol:protein length:171 60S ribosomal protein L6  ali model follow..  78  1........................EYTTLRKSCKPGTIAIILAGRFRGRRVVILKQLPRNGPLVISGPMKYNGVPIRRIDSRYIIATSTKVDIKNVDVSGITPDIFKRPKQEKRVKSEGEFMGDKAKKAAEQKAKKTAKAAPKGIVSDARAQLQKKVDAALIEAIRKDPLGKEKAGYLHSVFTIKPGDAPHRMRW 171
4 -87.7005xxb_E mol:protein length:193 Ribosomal protein eL6  ali model follow..  38  8LAKKRLRTRKPKRQLYKSPAGAAKRMAKLRSSITPGTVLILLSGGHRGKRVVFLKQLAPSGLLLVTGPFKVNGVPLRRVNQRYVIATTTKVDISGVDVSSIKDEQFGASKKEKFAERK------LRKKQDEGMFVQQSDSKAKQALPAQFKQLQDSVDKALLASLSKDK---LLTQYLKTRFTLRGNMRPHEMKF 193
5 -84.9005apo_E mol:protein length:176 60S RIBOSOMAL PROTEIN EL6  ali model follow..  42  6.APKWYPSEDVAALKK---TRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDN-TLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEXXXXXXXXX----------------XXXXXXXXXKEIKAERVEDQKVVDKALIAEIKKTP---LLKQYLSASFSLKNGDKPHMLKF 176
6 -82.2003jbs_A mol:protein length:176 eL6  ali model follow..  40  6.APKWYPSEDVAALKK---TRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDN-TLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKE----------------ANLFPEQQNKEIKAERVEDQKVVDKALIAEIKKTP---LLKQYLSASFSLKNGDKPHMLKF 176
7 -79.8003j79_I mol:protein length:221 60S ribosomal protein eL6  ali model follow..  28  25.AKKTINKKYFGRKVAS--KKKYVVQRKLRKSIEVGKVAIILTGKHMGKRCIITKILNSG-LLAVVGPYEINGVPLKRVDSRYLVVTSTNIFNFELNYAQDIDDDSFIKTLEIKKKQKKLLKNKNEALFMNNVIDKIKEIRKEDPKVQKLEGIQKDIGSLLKPEILKNK---VFAHYLKSKFTLRNDMVLHKMKF 221
8 -78.3003j7o_E mol:protein length:236 Ribosomal protein eL6  ali model follow..  34  64....YPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSG-LLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQ--------------EGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQ---GYLRSVFALTNGIYPHKLVF 236
9 -74.4005lzs_E mol:protein length:291 60S ribosomal protein L6  ali model follow..  34  115.MPRYYPTEDVPRKLLSHKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLSSG-LLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQ--------------EGEIFDTEKEKYEITEQRKVDQKAVDSQILPKIKAVPQLQ---GYLRSVFALTNGVYPHKLVF 291
10 -72.8003j92_E mol:protein length:284 eL6  ali model follow..  32  109.PRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSG-LLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQ--------------EGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVP---QLQGYLRSVFALTNGIYPHKLVF 284
11 -71.9004d5y_E mol:protein length:288 60S RIBOSOMAL PROTEIN EL6  ali model follow..  33  113.PRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASG-LLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQ--------------EGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQLQ---GYLRSVFALTNGIYPHKLVF 288
12 -55.8005xy3_E mol:protein length:151 60S ribosomal protein L6, putative  ali model follow..  27  24..PRISFTRPAVAADPIAKPACNAKAVETRANLKVGTVVIIVGGEHQGKRAVVVADQGAG-IVKVAGPV----VPVNEISQDYLIATSTSIDV-----------------------------------------------------------AANATEAQVEAAAAKVPEMV---DYLKAPFTIKKGNRIHLMKF 151
13 -25.6002joy_A mol:protein length:96 50S ribosomal protein L14e  ali model follow..  22  2..............................PAIEVGRICVKVKGREAGSKCVIVDIIDDN-FVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQKGASDEEVKKKLEESNLTEYMKEK............................................................................. 88
14 -14.7005xxb_L mol:protein length:134 Ribosomal protein eL14  ali model follow..  13  8................................YQPGRLCVVQYGPDAGKLCFVVDIINQTRVL-VDGA-GVTGVKRQSMPVRRIALTDQYLKIPRSVRSATLKKALEKDDVIAKFNQSSWGKRRLAKEQRANMSDF-----DRFKLMVILKQRRKVMQQKLKSLKK............................. 134
15 -13.7003jct_M mol:protein length:138 60S ribosomal protein L14-A  ali model follow..  18  15................................VEVGRVVLIKKGQSAGKLAAIVEIIDQKKVL-IDGP---AGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAAVCEKWAASSWAKKIAQRERRAALTDF-----ERFQVMVLRKQKRYTVKKALAKA............................... 138
16 -13.2003j79_N mol:protein length:165 60S ribosomal protein eL14  ali model follow..  15  15......................SKKNLLFKRFVEPGRLCLIEYGPYAGKLCFIVDIVTITRVI-VDGA-FITGVPRMVIPLKRLKLLKERIKINKNCKSGFLRKTVNSTKVLEEFNNSKLGKKMIIKKKRDEATDF-----ERFQVYFAKRELKKKMTTIKNKKNGENKKVKKNVQKVKA............... 165
17 -12.7005t5h_P mol:protein length:149 40S ribosomal protein L14  ali model follow..  13  3................................IRAGRLVRIIRGPRQDRVGVVVDIIDGNRVL-VENP-ADKKMWRHVQNLKNVEPLKFSVELSRNCSTKTLKNVLAEKKILEKYAATKSARRIAAKRAFARSTDF-----ERYQLRVAKRSRAFWTRKVFDENDKKKP.......................... 132
18 -12.7003j79_1 mol:protein length:146 60S ribosomal protein eL27  ali model follow..  24  5................................LKPGKVIIILNGRRAGKKAVIVNTYEGQT-CLVAG---IEKHPIKCINVNHILPTRYQVANDFDIKSLASDDVLKSKNKKKEVKKLGKIFRDKFLEPVNKK.............................................................. 129
19 -12.5005xxb_Y mol:protein length:146 Ribosomal protein eL27  ali model follow..  13  1............................MVKLLKSGRVVVVLNGRHAGKKGVVVNTWEGSK-CLVAG---IEKAPLKYINVNHLMPTRYTVSSDMDVKTMVPEDAMRTVDDRKAAKKGLKKIFYEKFTNPVNEKVGKVSKDLLFLRKKLR............................................. 145
20 -12.4003jct_Z mol:protein length:136 60S ribosomal protein L27-A  ali model follow..  19  1............................MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGS-ALVAG---IERYPIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQ............................................................... 128
21 -12.3005t5h_a mol:protein length:132 Ribosomal protein L27  ali model follow..  19  3................................LKPGKVVIVTSGRYAGKKAVIVQNTDSKS-SLIAG---MKKYPLRVVNHKHFLPTRYNMDLSRELRGRINVSDASKKAKSKQLVRK............................................................................. 112
22 -12.3003j7o_Z mol:protein length:136 Ribosomal protein eL27  ali model follow..  23  1............................MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGT-ALVAG---IDRYPVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNK............................................................... 128
23 -12.2003jcs_Y mol:protein length:134 ribosomal protein L27e  ali model follow..  22  1............................MTKFLKPGKVVIVTAGRYAGHKAVIVQNSDIAT-ALLAG---IKKYPLRVVNHKHFLPTRYNVDMSKELRGKINVSDASKRSRSKRLVRH............................................................................. 114
24 -12.1005xy3_Z mol:protein length:139 Ribosomal protein L27e, putative  ali model follow..  18  4................................LQAGRFVVMLQGRHAGKKAVVLAAYPEGT-AIVMG---IEKYPVKAVNFNHVMLTRHNVKDEKKISVEKVVAALKDAPAKKALLTEYAAVLRQKYLNNKMA.............................................................. 131
25 -11.9003jcs_K mol:protein length:233 ribosomal protein L14e  ali model follow..  15  62.............................SHYICAGRLVRILRGPRQDRVGVIVDIVDANRVL-VENP-EDAKMWRHVQNLKNVEPLKYCVSVSRNCSAKALKDALASSKALEKYAKTRTAARVEAKKACAASTDF-----ERYQLRVARRSRAHWARKVFDEKDAKTP.......................... 194
26 -11.4005xy3_M mol:protein length:128 Ribosomal protein L14, putative  ali model follow..  11  7................................VEIGRVALINFGELVDKLAIIVDIVDDKRVL-IDVL---FDAPRQTIPIQRLKLTDYVAKIQRNAAPEAAKAAAKDFIKQFYESAWGKQVIARKNKAQMND--------QRFKYAQLEAKRDALVAKELNN................................ 127
27 -10.3004adx_7 mol:protein length:126 RPL14E  ali model follow..  19  4.............................NKFVQVGRVVYINYGADKGKLAVIVNIINQNRIL-IDGE----HIVRQVIPIRRVHLTKFQID----NVELNQRTVLLKKKIAKFDLTKKYAETSFAKKQAIKTKRANLGDFDRFRVMVLKKKLARTSAKS................................... 125
28 -10.3006d90_M mol:protein length:198 eL14  ali model follow..  14  4.............................RRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRAL-VDGPC--TRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIEARERKAKMTDF-----DRYKVMKAKKMRNRIIKNEV-KKLQRAALLK....................... 137
29 -10.2005lzs_M mol:protein length:218 Uncharacterized protein  ali model follow..  13  4.............................RRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRAL-VDGP---TRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIEARERKAKMTDF-----DRYKVMKAKKMRNRIIKNEVKKLQRAALLKA....................... 138
30 -9.6204d5y_M mol:protein length:215 60S RIBOSOMAL PROTEIN EL14  ali model follow..  15  4.............................RRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRAL-VDGP---TQVRRQAMPFKCMQLTDFILKF-----PHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQKAALL......................... 136
31 -9.5903j7o_M mol:protein length:213 Ribosomal protein eL14  ali model follow..  14  4.............................RRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRAL-VDGPC--TQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDF-----DRYKVMKARKMRNRLIKLE................................... 126
32 -9.3903j7z_U mol:protein length:104 50S ribosomal protein L24  ali model follow..  12  1............................MAAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKH-VPALNQPGGIVEKEAAIQVSNVAI................................................................................................. 72
33 -9.2104v4i_S mol:protein length:110 50S ribosomal protein L24  ali model follow..  15  2...........................RVKMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKK-VSPKYPQGGFIEKEAPLHASKVRP................................................................................................. 74
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.