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Query: 3jct_M mol:protein length:138 60S ribosomal protein L14-A, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .
# Score Template Links and tools%idFirst MSTDSIVKASNWRLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAAVCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAKALast
1 -92.9003jct_M mol:protein length:138 60S ribosomal protein L14-A  ali model  100  1MSTDSIVKASNWRLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAAVCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAKA 138
2 -81.8005xy3_M mol:protein length:128 Ribosomal protein L14, putative  ali model follow..  32  1........MPFKQFVEIGRVALINFGELVDKLAIIVDIVDDKRVLIDVLEFDAPRQTIPIQRLKLTDYVAKIQRNAAPEAAKAAAK--DFIKQFYESAWGKQVIARKNKAQMNDFQRFKYAQLEAKRDALVAKELNN. 127
3 -79.6006d90_M mol:protein length:198 eL14  ali model follow..  43  1........MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIEARERKAKMTDFDRYKVMKAKKMRNRIIKNEVKKL 130
4 -76.3005xxb_L mol:protein length:134 Ribosomal protein eL14  ali model follow..  36  2........GLFTRYYQPGRLCVVQYGPDAGKLCFVVDIINQTRVLVDGAGTGVKRQSMPVRRIALTDQYLKIPRSVRSATLKKALEKDDVIAKFNQSSWGKRRLAKEQRANMSDFDRFKLMVILKQRRKVMQQKLKSL 132
5 -75.7004adx_7 mol:protein length:126 RPL14E  ali model follow..  42  1........MVFNKFVQVGRVVYINYGADKGKLAVIVNIINQNRILIDGE--HIVRQVIPIRRVHLTKFQINVELNQRTVLLKKKIAKFDLTKKYAETSFAKKQAIKTKRANLGDFDRFRVMVLKKKLARTSAKS.... 125
6 -75.2003j79_N mol:protein length:165 60S ribosomal protein eL14  ali model follow..  31  18.......NLLFKRFVEPGRLCLIEYGPYAGKLCFIVDIVTITRVIVDGAFTGVPRMVIPLKRLKLLKERIKINKNCKSGFLRKTVNSTKVLEEFNNSKLGKKMIIKKKRDEATDFERFQVYFAKRELKKKMTTIKNKK 149
7 -74.6005t5h_P mol:protein length:149 40S ribosomal protein L14  ali model follow..  29  1............NYIRAGRLVRIIRGPRQDRVGVVVDIIDGNRVLVENPAKKMWRHVQNLKNVEPLKFSVELSRNCSTKTLKNVLAEKKILEKYAATKSARRIAAKRAFARSTDFERYQLRVAKRSRAFWTRKVFDEN 127
8 -72.5003jcs_K mol:protein length:233 ribosomal protein L14e  ali model follow..  23  51AQGIALCIMVKSHYICAGRLVRILRGPRQDRVGVIVDIVDANRVLVENPEDKMWRHVQNLKNVEPLKYCVSVSRNCSAKALKDALASSKALEKYAKTRTAARVEAKKACAASTDFERYQLRVARRSRAHWARKVFDEK 189
9 -62.8003j7o_M mol:protein length:213 Ribosomal protein eL14  ali model follow..  43  1........MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKLEVKKL 130
10 -61.8004d5y_M mol:protein length:215 60S RIBOSOMAL PROTEIN EL14  ali model follow..  43  1........MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKL 130
11 -61.4005lzs_M mol:protein length:218 Uncharacterized protein  ali model follow..  43  1........MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIEARERKAKMTDFDRYKVMKAKKMRNRIIKNEVKKL 130
12 -42.0002joy_A mol:protein length:96 50S ribosomal protein L14e  ali model follow..  31  2............PAIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKTGVKRRRVNILHLEPTDKKIDIQKGASDEEVKKKLEESNLTEYMKEKIKIRMPTL................................. 96
13 -20.4003j79_I mol:protein length:221 60S ribosomal protein eL6  ali model follow..  16  51...........RKSIEVGKVAIILTGKHMGKRCIITKILNSGLLAVVGP-NGVPLKRVDSRYLVVTSTNIFNFENIAKLKDDFLNYAQDIDDDSFIKTLEIKKKQKKLLKNKNEAKEDPKVQKLEGIQKDIGSLLKPE 193
14 -17.6005xy3_E mol:protein length:151 60S ribosomal protein L6, putative  ali model follow..  23  53...........RANLKVGTVVIIVGGEHQGKRAVVVADQGAGIVKVAGPVVPVNE--ISQDYLIATSTSIDVAANATEAQVEAAAAKVPEMVDYLKAPFTIK.................................... 141
15 -15.5005apo_E mol:protein length:176 60S RIBOSOMAL PROTEIN EL6  ali model follow..  21  34..............LVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGP-NGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEX-----------XXXXXXXXXXXXXXXXXKEIKAERVEDQKVVDKALIAE 148
16 -15.4003jbs_A mol:protein length:176 eL6  ali model follow..  17  31...........RASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGP-NGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEK-----------LTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKALIAE 148
17 -14.5005t2a_t mol:protein length:195 eL6  ali model follow..  18  33..............CAPGAIAIILAGRFRGRRAVILKQLPHNGPLVSGPMNGVPIRRIDSRYVIATSTTVDISSVDTASITAEVFQRPKAEKPTKSEGDFMGDKQKAKAEKAAKKKKTLVSDARAQLQKKIDAALIAA 164
18 -14.4005t5h_v mol:protein length:171 60S ribosomal protein L6  ali model follow..  16  6...........RKSCKPGTIAIILAGRFRGRRVVILKQLPRNGPLISGP-NGVPIRRIDSRYIIATSTKVDIKNVDVSGITPDIFKRPKQEKRVKSEGEFMGDKAKKAAEQKAKKPKGIVSDARAQLQKKVDAALIEA 140
19 -13.7003jcs_F mol:protein length:195 ribosomal protein L6e  ali model follow..  18  33..............CAPGVIAIILAGRFRGRRAVILKQLPHNGPLVSGP-NGVPIRRIDSRYVIATSTKVDISSVDTAPITPEVFQRPKAEKLTKSEGDFMGDKQKARAEKAAKKKKTPVSDARAQLQKKIDAALIAA 164
20 -13.7003j7o_E mol:protein length:236 Ribosomal protein eL6  ali model follow..  15  89...........RASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGP-NRVPLRRTHQKFVIATSTKIDISG------------PKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRR 208
21 -13.4005xxb_E mol:protein length:193 Ribosomal protein eL6  ali model follow..  18  40..............ITPGTVLILLSGGHRGKRVVFLKQLAPSGLLVTGP-NGVPLRRVNQRYVIATTTKVDISGVDVSSIKDEQFGASKKEKFAERKL-RKKQDEGMFVQQSDSKAKQALPAQFKQLQDSVDKALLAS 165
22 -12.9005t5h_a mol:protein length:132 Ribosomal protein L27  ali model follow..  23  1............KFLKPGKVVIVTSGRYAGKKAVIVQNTDSKHSLIAGMKKYPKKRVVNHKHFLPTRYNMDLSRELRGRINVSDASKKAKSKQLVRKLFQARYNAGSNR............................. 124
23 -12.8003j92_E mol:protein length:284 eL6  ali model follow..  16  140..............ITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGP-NRVPLRRTHQKFVIATSTKIDISG------------PKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRR 256
24 -12.6005lzs_E mol:protein length:291 60S ribosomal protein L6  ali model follow..  16  147..............ITPGTILIILTGRHRGKRVVFLKQLSSGLLLVTGP-NRVPLRRTHQKFVIATSTKIDISG------------PKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKVDQKAVDSQILPK 263
25 -12.4003jcs_Y mol:protein length:134 ribosomal protein L27e  ali model follow..  16  3............KFLKPGKVVIVTAGRYAGHKAVIVQNSDIARALLAGIKKYPKKRVVNHKHFLPTRYNVDMSKELRGKINVSDASKRSRSKRLVRHVFQARYNAGSSM............................. 126
26 -12.3005xxb_Y mol:protein length:146 Ribosomal protein eL27  ali model follow..  21  3............KLLKSGRVVVVLNGRHAGKKGVVVNTWEGSKCLVAGIEKAPLKKYINVNHLMPTRYTVSSDMDVKTMVPEDAMRTVD----------DRKAAKKGLKKIFY--EKFTNPVNEKV............ 130
27 -12.0005xy3_Z mol:protein length:139 Ribosomal protein L27e, putative  ali model follow..  19  2............SLLQAGRFVVMLQGRHAGKKAVVLAAYPEGYAIVMGIEKYPKKKAVNFNHVMLTRHNVKDE-------DFFKKISVEKVVAALKDAPAKKALLTEYAAVLR--QKYLNNKMA.............. 131
28 -12.0003j79_1 mol:protein length:146 60S ribosomal protein eL27  ali model follow..  19  3............KLLKPGKVIIILNGRRAGKKAVIVNTYEGQYCLVAGIEKHPLKKCINVNHILPTRYQVANDFDIKSLASDDVLKSK-----------NKKKEVKKLGKIFR--DKFLEPVNKKT............ 130
29 -12.0004d5y_E mol:protein length:288 60S RIBOSOMAL PROTEIN EL6  ali model follow..  15  141...........RASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGP-NRVPLRRTHQKFVIATSTKIDISN------------PKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQILPK 260
30 -11.8003jct_Z mol:protein length:136 60S ribosomal protein L27-A  ali model follow..  17  3............KFLKAGKVAVVVRGRYAGKKVVIVKPHDEGHALVAGIERYPLKKVVNYNHLLPTRYTLDVE-----------AFKSVVSTETFEQPSQREEAKKVVKKAFE--ERHQAGKNQ.............. 128
31 -11.5003j7o_Z mol:protein length:136 Ribosomal protein eL27  ali model follow..  20  3............KFMKPGKVVLVLAGRYSGRKAVIVKNIDDGHALVAGIDRYPRKKVYNYNHLMPTRYSVDIP-----------LDKTVVNKDVFRDPALKRKARREAKVKFE--ERYKTGKNK.............. 128
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang B, Jaroszewski L, Rychlewski L, Godzik A. Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies. Fold Des. 1997;2(5):307-17.