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Query: 3jw4_A mol:protein length:148 Transcriptional regulator, MarR/EmrR family, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SNAMKESNHLMDTPYSYLIRSIGMKLKTSADARLAELGLNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFNNIFLEVEESITKGLTKDEQKQLMSILIKVNRSMLast
1 -63.7003jw4_A mol:protein length:148 Transcriptional regulator, MarR/EmrR family  ali model  100  1SNAMKESNHLMDTPYSYLIRSIGMKLKTSADARLAELGLNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFNNIFLEVEESITKGLTKDEQKQLMSILIKVNRSM 148
2 -58.1005fb2_A mol:protein length:140 MarR family regulatory protein  ali model follow..  35  3...........EFTYSYLFRMISHEMKQKADQKLEQLDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQTLVSQLSEEENEQMKANLTKMLSSL 139
3 -57.9004ld5_A mol:protein length:145 MepR  ali model follow..  34  1..........MEFTYSYLFRMISHEMKPKADQKLEQFDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQTLVSQLSEEENEQMKANLTKMLSSL 138
4 -57.9004l9t_A mol:protein length:145 MepR  ali model follow..  35  1..........MEFTYSYLFRMISHEMKQKADQKLEQLDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQTLVSQLSEEENEQMKANLTKMLSSL 138
5 -57.8004l9n_A mol:protein length:145 MepR  ali model follow..  34  1..........MEFTYSYLFRMISHEMKQKADQKLEQFDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEVFTSIFDEMEQTLVSQLSEEENEQMKANLTKMLSSL 138
6 -57.1003bro_A mol:protein length:141 Transcriptional regulator  ali model follow..  23  1.......SNAMSRDLGRLLKIASNQMSTRFDIFAKKYDLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIILSYMDSDQSQMTSGLNKEEVVFLEKILKRMIES. 140
7 -56.9005f6f_A mol:protein length:161 MarR family regulatory protein  ali model follow..  33  18...........EFTYSYLFRMISHEMKQKADQKLEQFDITNEQRHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQTLVSQLSEEENEQMKANLTKMLSSL 154
8 -56.0003q5f_A mol:protein length:147 Transcriptional regulator slyA  ali model follow..  22  1.......SNAMESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNIHQL-PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEMEEVIHKTRGEILAGISSEEIELLIKLIAKLEHNI 140
9 -56.0002fbh_A mol:protein length:146 transcriptional regulator PA3341  ali model follow..  22  4.......AQTDKHYFGTLLAQTSRAWRAELDRRLSHLGLSQARWLVLLHLARHR-DSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIEAIAASVRNDVLTGIDESEQALCQQVLLRILANL 143
10 -55.4003deu_A mol:protein length:166 Transcriptional regulator slyA  ali model follow..  22  3SSGHIEGRHMLESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNIHQL-PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEMEEVIHKTRGEILAGISSEEIELLIKLIAKLEHNI 149
11 -55.2004aih_A mol:protein length:151 TRANSCRIPTIONAL REGULATOR SLYA  ali model follow..  21  1..........MESTLGSDLARLVRVWRALIDHRLKPLELTQTHWVTLYNINRL-PPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQVDGVISSTRKEILGGISSDEIAVLSGLIDKLEKNI 137
12 -55.2003oop_A mol:protein length:143 Lin2960 protein  ali model follow..  17  1....SNAMRGYYDEISFDVNTTAKKMHLFLMRSIASYDVTPEQWSVLEGIEA--NEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELRDIVEASCEKMFAGVTRTDLEQFTAILKNISTNI 142
13 -54.6004hbl_A mol:protein length:149 Transcriptional regulator, MarR family  ali model follow..  17  1SNAMKQEQMRLANQLCFSAYNVSRLFAQFYEKKLKQFGITYSQYLVMLTLWE--ENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAVFEAISSCLPQEFDTTEYDETKYVFEELEQTLKHL 146
14 -54.3001lj9_A mol:protein length:144 transcriptional regulator SlyA  ali model follow..  23  1............TDILREIGMIARALDSISNIEFKELSLTRGQYLYLVRVCEN--PGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNV 134
15 -53.7004mnu_A mol:protein length:153 SlyA-like transcription regulator  ali model follow..  24  2.........NAMKDILRDIGVIARALDSISNIEFKELNLAKGQFIYLVRICEN--QGIIQEKLVDILKIDRTTASRAIKNLEKNGLIIKKQNKNNKKNKLLFPTEKGQQLYPLIIRENEYSNAVALKGFTEAEINMLTDALKKVKENI 138
16 -53.5003bpx_A mol:protein length:148 Transcriptional regulator  ali model follow..  24  1.....GSHMDRDIPLKGLLSIILRSHRVFIGRELGHLNLTDAQVACLLRIHRE--PGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLILKVEERWEDLLFRDFTEDERKLFRKMCRRLAEEA 141
17 -53.3005hli_A mol:protein length:149 MarR family transcriptional regulator  ali model follow..  15  1QSNMKQEQMRLANQLCFSAYNVSRLFAQFYEKKLKQFGITYSQYLVLLTLWE--ENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAVFEAISSCLPQEFDTTEYDETKYVFEELEQTLKHL 146
18 -52.9003s2w_A mol:protein length:159 Transcriptional regulator, MarR family  ali model follow..  15  10DGISHAEGLCDKEFIGKAISYLYRYGQIYIGKKIEPYGIGSGQFPFLMRLYRE--DGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDMKKIASEWGEILFSSFDDRQRREITNSLEIMFENG 155
19 -52.7003fm5_A mol:protein length:150 Transcriptional regulator  ali model follow..  16  4.....AESQALSDDIGFLLSRVGGMVLGAVNKALVPTGLRVRSYSVLVLACEQA-EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAKARVDAAHGRYFEGIPDTVVNQMRDTLQSIAFPT 145
20 -52.5003k0l_A mol:protein length:162 Repressor protein  ali model follow..  15  6RSSSVDRKREEEPRLSYMIARVDRIISKYLTEHLSALEISLPQFTALSVLAA--KPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCNQVVQQLEAQMLQGVDINLAFLIRNNLELMVKNL 151
21 -52.4003bja_A mol:protein length:139 Transcriptional regulator, MarR family, putative  ali model follow..  17  4...........NRELYGNIRDVYHLLQKNLDKAIEQYDISYVQFGVIQVLAK--SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQVDVQYSDFLKENCGCFTKEEEGILEDLLLKWKKHL 138
22 -52.2003cjn_A mol:protein length:162 Transcriptional regulator, MarR family  ali model follow..  17  16....ELAEIGLEGYAPYLMNRIMGRYNANLRKEMTALGLSTAKMRALAILSA--KDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRLWPHMRASHDRMFQGITPQERQAFLATLNKMLANI 157
23 -51.6003bj6_A mol:protein length:152 Transcriptional regulator, MarR family  ali model follow..  17  1SNAMTHET-DQLYQAVQATRPLLRNITAAVERGTLREGVTVGQRAILEGLSLT--PGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAIRADEMAKLALFSEGFSSVELTAYHKVQLALTRFF 145
24 -51.4002a61_A mol:protein length:145 transcriptional regulator Tm0710  ali model follow..  21  2.........SMKQPFERILREICFMVKVEGRKVLRDFGITPAQFDILQKIYF--EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVIERRENFIEKITSDLGKEKSSKILDYLKELKGVM 138
25 -51.3005hsm_A mol:protein length:160 Uncharacterized HTH-type transcriptional regulator Rv2887  ali model follow..  20  20..........DDAPLGYLLYRVGAVLRPEVSAALSPLGLTLPEFVCLRMLSQS--PGLSSAELARHASVTPQAMNTVLRKLEDAGAVARPASVSSGRSLPATLTARGRALAKRAEAVVRAADARVLARLTAPQQREFKRMLEKLGSD. 154
26 -50.7003tgn_A mol:protein length:146 Adc operon repressor AdcR  ali model follow..  17  1...MRQLAKDINAFLNEVILQAENQHEILIGHCTSEVALTNTQEHILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEEHTLL--TYEQVATQFTPNEQKVIQRFLTALVGEI 140
27 -50.5005eri_A mol:protein length:169 MarR family transcriptional regulator  ali model follow..  20  16.......IKTLDSNILREVGTLSRAVNSINDIKYKELKLQKGQFTFLTRICEN--PGINLVELSNMLKVDKATTTKAIQKLIKAGYVDKKQDKFDKRGYNLTPTDKSLEVYELIIEEENRSIEICFDNFTDEEKQVVTKLLEKMSKNV 154
28 -50.4002rdp_A mol:protein length:150 putative transcriptional regulator MarR  ali model follow..  21  1SNAMPSANERTVAELEKLLRYIAANLKQRGREILTNYPITPPQFVALQWLLE--EGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVIEKRQRDLANVLESFSDEEIVVFERCLRKLHQEM 147
29 -50.2003cdh_A mol:protein length:155 Transcriptional regulator, MarR family  ali model follow..  13  7....TPDDTFVSGYLLYLLAASSEEASAQFHDHIRAQGLRVPEWRVLACLVDN--DAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAESLVASARAHETRLLSALADTDAARIKGVLRTLLDVL 148
30 -50.0003e6m_A mol:protein length:161 MarR family Transcriptional regulator  ali model follow..  14  17....YGSPGELNSFLPYLLTRITHIWSSELNQALASEKLPTPKLRLLSSLSAY--GELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEISPLINDFHAELVGNVDPDKLQTCIEVLGEILKGK 158
31 -49.8003kp2_A mol:protein length:151 Transcriptional regulator TcaR  ali model follow..  13  1...MVRRIEDHISFLEKFINDVNTLTAKLLKDLQTEYGISAEQSHVLNML---SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVEKPDSNTDQRLKIIKLSNKGKKYIKERKAIMSHIASDMTSDFDSKEIEKVRQVLEIIDYRI 144
32 -49.8005e1w_A mol:protein length:180 Transcriptional regulator, MarR family  ali model follow..  13  11QGPNEFETLELEHLLWVNITQVKHSIERAWTRELKSLNLSTEKFAILHELMCLGGE-STPHTLARRIVFEPHSVSAIVSRMEKDGLIIKTKDLDKKHMVRIKLSEKAIDTFYQALEISNRVYKQMMASITREEKVELSKTLTKLRNHT 157
33 -49.6002pfb_A mol:protein length:153 Transcriptional regulator OhrR  ali model follow..  19  7TTARTDTLLQLDNQLCFALYSANLAMHKLYRGLLKALDLTYPQYLVMLVLWE--TDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSKAGAVPEQVFCAS--ASSLDELRQLKQELEKLRSSL 150
34 -49.6002pex_A mol:protein length:153 Transcriptional regulator OhrR  ali model follow..  20  7TTARTDTLLQLDNQLSFALYSANLAMHKLYRGLLKALDLTYPQYLVMLVLWE--TDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSKAGAVPEQVFCAS--ACSLDELRQLKQELEKLRSSL 150
35 -48.7004xrf_A mol:protein length:142 Transcriptional regulator, MarR family  ali model follow..  22  5............DKIQALAFSIGKKMQTELLEQMQATGLTPPQFYILKILDH--YGASRATTLAKKMYVKPSAITVMIDRLIDQELVERYHDKDDRRVVIIELTKKGKARVEEAMTARNEHIAKYFSHLELQEREDLLRLFEKLETII 138
36 -48.5005aip_A mol:protein length:146 TRANSCRIPTIONAL REGULATOR, MARR FAMILY  ali model follow..  22  2......PTQSKHASINIGLIQAREALMTQFRPILNQANITDQQWRIIRLLAE--NGTLDFQDLANQACILRPSLTGILTRLEKAGLVVRLKPSNDQRRVFLKLTAEGEKLYEEIGEEVDERYDAIEEVLGREKMLLLKDLLAELAKIE 141
37 -48.4002eth_A mol:protein length:154 transcriptional regulator, putative, Mar family  ali model follow..  13  1...MGSDKIMDALEIFKTLFSLVMRFSSYLPSNEEISDMKTTELYAFLYVALF--GPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEILSNFESLLKSVLEKFSEEDFKVVSEGFNRMVEAL 143
38 -48.1001z91_A mol:protein length:147 Organic hydroperoxide resistance transcriptional regulator  ali model follow..  20  4....KFDHMKLENQLSFLLYASSREMTKQYKPLLDKLNITYPQYLALLLLWE--HETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKAVDIPGTILG--LSKQSGEDLKQLKSALYTLLETL 143
39 -48.0002eb7_A mol:protein length:146 146aa long hypothetical transcriptional regulator  ali model follow..  17  3......ESNENRIQIMSTIAKIYRAMSRELNRRLGELNLSYLDFLVLRAT---SDGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKGIEIYKKLANEVTGDLSEDEVILVLDKISKILKRI 141
40 -47.9001s3j_A mol:protein length:155 YusO protein  ali model follow..  15  2.....KSADQLMSDIQLSLQALFQKIQPEMLESMEKQGVTPAQLFVLASLKKH--GSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEVLAGRKAIMARYLSFLTEEEMLQAAHITAKLAQAA 142
41 -47.9002fbi_A mol:protein length:142 probable transcriptional regulator  ali model follow..  16  5.........TPRPSLTLTLLQAREAAMSFFRPSLNQHGLTEQQWRVIRILRQ--QGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMSGDMEKNYQRIQERFGEEKLAQLLELLNELKKI. 140
42 -47.7003vb2_A mol:protein length:144 Multiple antibiotic resistance protein marR  ali model follow..  24  4....TSDLFNEIIPLGRLIHMVNQKKDRLLNEYLSPLDITAAQFKVLSSIRS--AASITPVELKKVLSVDLGALTRMLDRLVSKGWVERLPNPNDKRGVLVKLTTGGAAISEQSHQVGQDLHQELTKNLTADEVATLEYLLKKVLP.. 144
43 -47.5003hrm_A mol:protein length:140 HTH-type transcriptional regulator sarZ  ali model follow..  18  2......SHMYLSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIEN--DEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAEISVKVFNEF--NISEREASDIINNLRNFVSKN 139
44 -47.1004em0_B mol:protein length:178 Uncharacterized HTH-type transcriptional regulator SAR2349  ali model follow..  11  30......SDFMLSQEFFNSFITIYRPYLKLTEPILEKHNIYYGQWLILRDIAKH--QPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPKGHELYEIVCLDVQKLQQAVVANISQDQMQETINVMNQIHEIL 171
45 -47.0002fa5_A mol:protein length:162 transcriptional regulator marR/emrR family  ali model follow..  12  8TPSPHPVLLNLEQFLPYRLSVLSNRISGNIAKVYGDYGMAIPEWRVITILALY--PGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVAPLVNEMEQRLMSVFSAEEQQTLERLIDRLAKDG 154
46 -46.9001lnw_A mol:protein length:147 Multidrug resistance operon repressor  ali model follow..  19  2.......NYPVNPDLMPALMAVFQHVRTRIQSELQRLDLTPPDVHVLKLIDEQ--RGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHQHAEAIMSRVHDELFAPLTPVEQATLVHLLDQCLAAQ 142
47 -46.8003u2r_A mol:protein length:168 Regulatory protein MarR  ali model follow..  15  17...........TQEAYLQLWRTYDRMKAIEEEIFSQFELSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKDLEEPVRQCHERQLGHLAADELHELIRLMELARTPH 153
48 -46.7003ech_A mol:protein length:142 Multidrug resistance operon repressor  ali model follow..  20  2.......NYPVNPDLMPALMAVFQHVRTRIQSELQRLDLTPPDVHVLKLIDEQ--RGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAELIMSRVHDELFAPLTPVEQATLVHLLDQCLAA. 141
49 -46.7005h3r_A mol:protein length:147 Multiple antibiotic resistance protein MarR  ali model follow..  24  7....TSDLFNEIIPLGRLIHMVNQKKDRLLNEYLSPLDITAAQFKVLCSI--RCAACITPVELKKVLSVDLGALTRMLDRLVSKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQVGQDLHQELTKNLTADEVATLEYLLKKVLP.. 147
50 -46.5002nnn_A mol:protein length:140 Probable transcriptional regulator  ali model follow..  18  3....RTTPYRLDDQIGFILRQANQRYAALFANGIGN-GLTPTQWAALVRLGET--GPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAGLAAAREINRQALAPLSLQEQETLRGLLARL.... 139
51 -46.5003g3z_A mol:protein length:145 Transcriptional regulator, MarR family  ali model follow..  13  4.............NQLDQLGTRINLICNVFDKWIGQQDLNYNLFAVLYTLAT--EGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLTESAQEFSDKVFATFGDKRTTRLFADLDALAEVM 136
52 -46.0005yhx_A mol:protein length:146 Zinc transport transcriptional regulator  ali model follow..  13  3.....SLANQIDQFLGTIMQFAENKHEILLGKCESDVKLTSTQEHILMLL---AEQISTNAKIAEKLKISPAAVTKALKKLQEQELIKSSRATNDERVVLWSLTEKAVPVAKEHATHHEKTLSELGNKFTDEEQEVISKFLSALTEEF 145
53 -45.8003nrv_A mol:protein length:148 Putative transcriptional regulator (MarR/EmrR family)  ali model follow..  19  1..SNAMQKINIDRHATAQINMLANKLMLKSSTAYQKFGIGMTEWRIISVL--SSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKV 145
54 -45.6004fht_A mol:protein length:157 PcaV transcriptional regulator  ali model follow..  12  3....HMAAVDLATHPGHLARRLQQAHYLLWNT-MVSEETTSPQYAVLNALVAE--PGLDQRTVGERVGLDRSTIAEVVSRLGRRGLLDKVRDPQDGRRSLLRLTDEGLRVHRRLGVRIARMNQVFLAPLAADEQAVFFDLIRRVADAA 143
55 -45.4002bv6_A mol:protein length:142 HTH-TYPE TRANSCRIPTIONAL REGULATOR MGRA  ali model follow..  17  2......SHMNLKEQLCFSLYNAQRQVNRYYSNKFKKYNLTYPQFLVLTILWD--ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELSNASDKVAS--ASSLSQDEVKELNRLLGKVIHAF 140
56 -45.3005yi0_B mol:protein length:146 Zinc transport transcriptional regulator  ali model follow..  14  5.......ANQIDQFLGTIMQFAENKHEILLGKAESDVKLTSTQEAILMLLA---EQISTNAKIAEKLKISPAAVTKALKKLQEQELIKSSRATNDERVVLWSLTEKAVPVAKEHATHHEKTLSELGNKFTDEEQEVISKFLSALTEEF 145
57 -45.2003bdd_A mol:protein length:142 Regulatory protein MarR  ali model follow..  19  8.................LLYRLKVADETISNLFEKQLGISLTRYSILQTLLK--DAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQARELITNPSAHHQAIKTSMNQILTVEESEQFLATLDKLLIGL 137
58 -44.7002qww_A mol:protein length:154 Transcriptional regulator, MarR family  ali model follow..  23  6.....NTDTENISELLKTYWSIQRISAGYADQNAASLGLTIQQLAMINVIYST--PGISVADLTKRLIITGSSAAANVDGLISLGLVVKKTIPNDSMDLTLKLSKKGEDLSKRSTANMYKAMMKVFENLTENEIEELIRLNKKVETLL 150
59 -44.4004zzl_A mol:protein length:158 MULTIDRUG RESISTANCE OPERON REPRESSOR  ali model follow..  18  9TENLYFQSMVNPDLMPALMAVFQHVWTRIQSEDCQRLDLTPPDVHVLKLIDEQ--RGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHQHAEAIMSRVHDELFAPLTPVEQATLVHLLDQC.... 151
60 -43.9005jlu_A mol:protein length:150 Adhesin competence repressor  ali model follow..  11  1GSHMGTLEKKLDNLVNTILLKAENQHELLFGACQSDVKLTNTQEHILMLL---SQQRLTNTDLAKALNISQAAVTKAIKSLVKQDMLAGTKDTVDARVTYFELTELAKPIASEHTHHHDETLNRLLQKFSAKELEIVDKFVTVFAEEL 148
61 -43.8002fbk_A mol:protein length:181 transcriptional regulator, MarR family  ali model follow..  22  42.............LTLLLLERLHAALGREIERTYAASGLNAAGWDLLLTLYRSAPPGLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTHLLPAHLATTQRVLAPLSAQEQRTLEELAGRMLAGL 177
62 -43.6005jls_A mol:protein length:155 Adhesin competence repressor  ali model follow..  11  1...MGTLEKKLDNLVNTILLKAENQHELLFGACQSDVKLTNTQEHILMLL---SQQRLTNTDLAKALNISQAAVTKAIKSLVKQDMLAGTKDTVDARVTYFELTELAKPIASEHTHHHDETLNRLLQKFSAKELEIVDKFVTVFAEEL 145
63 -43.2006c28_A mol:protein length:186 Transcriptional regulator, MarR family  ali model follow..  19  50..........LSELLGYALKRAQLRVFEDFLHCVAPVQLTPAQFSVLLLLDAN--PGRNQTEIATTLGILRPNFVAMLDALEGRGLCVRTRSPSDRRSHILMLTDKGRATLARAKKVATRHEDRLTELLGRDNRDALLSMLATIAREF 186
64 -43.0002fxa_A mol:protein length:207 Protease production regulatory protein hpr  ali model follow..  15  13.....KEALVFTQKMAQLSKALWKSIEKDWQQWLKPYDLNINEHHILWIAYQ--LNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLEEFDPTRNAVFKGSQPLY--HLFGKFPEVAEMM 151
65 -43.0003nqo_A mol:protein length:189 MarR-family transcriptional regulator  ali model follow..  19  3DYSNELKELFLMNQTYATLFTLTNKIQIEGDKYFG--ILTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCSRTGINFMADVFHEFTKDELETLWSLLKKMYRFN 148
66 -42.5004b8x_A mol:protein length:147 POSSIBLE MARR-TRANSCRIPTIONAL REGULATOR  ali model follow..  14  13..................IMRAQQILLGEVDAVVKPYGLTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEAATRDLMAMDF-GLGAYDAEECGEIFAMLRPLRVAA 141
67 -40.6004rbr_A mol:protein length:139 HTH-type transcriptional regulator rot  ali model follow..  10  13................LQLETLLGDINSIFSEIESEYKMSREEILILLTLWQ--KGSMTLKEMDRFVEVKPYKRTRTYNNLVELEWIYKERPVDDERTVIIHFNEKLQQEKVELLNFISDAIASRATAMQNSLNAII........... 131
68 -40.6004q77_A mol:protein length:139 HTH-type transcriptional regulator rot  ali model follow..  10  13................LQLETLLGDINSIFSEIESEYKMSREEILILLTLWQ--KGSMTLKEMDRFVEVKPYKRTRTYNNLVELEWIYKERPVDDERTVIIHFNEKLQQEKVELLNFISDAIASRATAMQNSLNAII........... 131
69 -38.6002nyx_A mol:protein length:168 Probable transcriptional regulatory protein, Rv1404  ali model follow..  12  3PTEYPATAEESVDVITDALLTASRLLVAISAHSIAQVNITIPQFRTLVIL--SNHGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQVTEHRRTEIARIVEQMAPAERHGLVRALTAFTEAG 150
70 -38.3003f3x_A mol:protein length:144 Transcriptional regulator, marR family, putative  ali model follow..  18  2......QKIDEKLQLMNTIAKIYRGSIKEFNNRLKLMNLSYLDFSILKAT---SEEPRSMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEANEVLRNLVNEMLSDVENVE--ELLEGLNKILSRI 139
71 -38.2003boq_A mol:protein length:160 Transcriptional regulator, MarR family  ali model follow..  12  24..................ILRLHGLVFGDLNRQLDETGLSLAKFDAMAQLARNP-DGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQASEAHNRILAELLRAVSDQDMVEASAALRGILESM 153
72 -37.7004fx0_A mol:protein length:148 PROBABLE TRANSCRIPTIONAL REPRESSOR PROTEIN  ali model follow..  19  2.........AFDECACYTTRRAARQLGQAYDRALRPSGLTNTQFSTLAVISLSEGSALTMSELAARIGVERTTLTRNLEVMRRDGLV-RVMAGADARCKRIELTAKGRAALQKAVPLWRGVQAEVTASVG--DWPRVRRDIANLGQAA 140
73 -36.7003zmd_A mol:protein length:178 PUTATIVE TRANSCRIPTIONAL REGULATOR  ali model follow..  13  35..................HLEVNRLLTHQLEKDLQPFGLTMNDYEILVNLSESEGDRMRMSDLATATMQSKSRLSHQITRMENANLVRRENCESDRRGLFAVLTEHGLETMRKVAPHVASVRRHFIDLLAPEDLTELDKALKPIAEHL 165
74 -36.5002frh_A mol:protein length:127 Staphylococcal accessory regulator A  ali model follow..  13  6.........ITKINDCFELLSMVTYADKLKSLIKKEFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSRVNKRITEANNEIE.................. 126
75 -34.3004yif_A mol:protein length:164 MarR family protein Rv0880  ali model follow..  17  9VPRGSHMVLDSDARLASDLSLAVMRLSRQLRFRNPSSPVSLSQLSALTTLANEG--AMTPGALAIRERVRPPSMTRVIASLADMGFVDRAPHPIDGRQVLVSVSESGAELVKAARRARQEWLAERLATLNRSERDILRSAADLMLA.. 152
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.