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Query: 3jx8_A mol:protein length:250 Putative lipoprotein, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GAADKRIDGNGNPETREIKISDYDEITFVGSADFEYEQSDKAPYLSVTIDENLFDYLVTEVEGGTLKIYPKSIKKGFNNNSYDLRPTVYKIKSNSKELKELNTVGSGSFIISKPTKVNRMEINMAGSGNVELRGPVKGYKLECNMAGSGNIIAKDIQLDNLSCSLASSGEIEVIGTVDRASFNVAGSGEIKAFDCQARKAECNIASSGEISVYATQILDANIVGSGEIHYKGDPEISKSIMGSGSINKVKLast
1 -76.3003jx8_A mol:protein length:250 Putative lipoprotein  ali model  100  1GAADKRIDGNGNPETREIKISDYDEITFVGSADFEYEQSDKAPYLSVTIDENLFDYLVTEVEGGTLKIYPKSIKKGFNNNSYDLRPTVYKIKSNSKELKELNTVGSGSFIISKPTKVNRMEINMAGSGNVELRGPVKGYKLECNMAGSGNIIAKDIQLDNLSCSLASSGEIEVIGTVDRASFNVAGSGEIKAFDCQARKAECNIASSGEISVYATQILDANIVGSGEIHYKGDPEISKSIMGSGSINKVK 250
2 -69.6004opw_A mol:protein length:241 Uncharacterized protein  ali model follow..  33  1..GADHVKGNGKLSTKKITIDDFNAIKFDGVIDFNYEQSESTPHIEITVDENLHPYVNIDIQDRVLTVGFKGA--------KVDHFTKFIVKTNSKWLKEVKASGNANFIANSPLKGDELKINANSNCLVQLKQKVEVGKLDLNVSGSANMVVNELKTDKLECSINGSGTINLAGNAEEADYSITTDGEIMAFGVAVPEVNCKITGKGSAQIHPTDNLKATIVGKGNIRYKGPTAVQQKVIGKGTVEEVK 241
3 -68.5003ljy_A mol:protein length:243 putative adhesin  ali model follow..  31  2..AADHVKGDGKLTSKKISVADYNEIKVDGVIDFNYEQSDDPSTVEVTVDQNLHPYVNIEVKDRVLTIAFKGA--------KVDHFTKFIVKTNSKWLAAAKVSGNANFMVNSPLTGDETVIKANANSLVQLKETVTVGKLDLNVSGSANMVVNHLEADKIECDIDGSGSITIKGNAKEGDYSIVSSGDIHAFGLAVPQLSCKVTGNGLAEVHATDNLKANVVGKGNIRYKGPTAVQQRIIGKGTVEEVK 242
4 -66.3003lyc_A mol:protein length:241 Putative pectinase  ali model follow..  36  1.......GGDGNITTENIPVSEYDCLELEGGGMVVNTQSDAPEGLEIKTDRNIFEKYEFNVENHKLKIRPKKEFRKHTN----FRPTEFMVTANSRNLKKLAAAGSTHVNINSPLQAEEFEAGLAGSGIIQFHDTASFTNLKIEIAGSGDFVGHKVYCEELNGDMAGSNTIVLGGTVGIAEFSIAGSGTVRAFDCTMDELECKIAGSGDIEAFVVNKIKAEIAGSGSVKYKGDPQIQKKVMGSGKIEKVE 241
5 -60.6003pet_A mol:protein length:221 Putative adhesin  ali model follow..  25  1..GGEGIQPSKKLITRDYKVKEFNKIDAGTVGNIYYTQSTDKTDLQIYGPDNIVALIQVAVKDNTLFLSIDKSKKVR-------NFKKMKITITSPTLNGISFKGVGDVHIENGLTTDNLDI---------------------ESKGVGNVDIQSLTCQKLNVQSMGVGDVKLEGTAQIAALHSKGVGNIEAGNLRANAVEASSQGVGDITCNATESIDAAVRGVGSIKYKGSPTISLSKKGVGTIKNI. 221
6 -47.6004ygu_A mol:protein length:184 putative adhesin  ali model follow..  21  1........GQDAKESEVRKVDAFSSIEITSVGTIHFTQSDTY-SFRIEGREKYVKNTETTVKDGRLLIGFKDKKNKSRRN----QKDGVTIWISAPDLKEVEFTGVGEFNCEKPLKLDEVSF---------------------EVKGVGEVNVADLTCNVLKVALRGVGSADIHVVCDYLSAQMGGVGSVTL-SGSAGRADISKGGIGGVNTDNLKIGR............................... 184
7 -7.1606f0t_A mol:protein length:256 Pizza6-SFW  ali model follow..  10  20.......................SGVAVDSAGTVYVTDHGNNRVVKLAAGSNTQTVLPFTGLNTPSGVAVDSAGTVYVTDHGNNRVVKLAAGSNTQTVSGVAVDSAGTVYVTDHGNNRVVKLAAGSNTQTVLPFTGLNTPSGVAVDSAGTVYVTDHGNNRVVKLAAGSNTQTVLPWTG-SGVAVDSAGTVYVTDHGNNRVVKLAAGSNTQTVLPFTGLNVAVDSAGTVYVHGNNRVVKLAAG........ 256
8 -7.0503snv_A mol:protein length:143 Symfoil-4T/Permutation #1 synthetic protein  ali model follow..  16  17...................................................................................................RINPDGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTHIQQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTFQISPEGNGEVLLKSTE.................................. 137
9 -7.0006f0q_A mol:protein length:256 Pizza6-AYW  ali model follow..  10  20.......................SGVAVDSAGTVWVTDHGNNRVVKLAAGSNTQTVLPFTGLNTPSGVAVDSAGTVWVTDHGNNRVVKLAAGSNTQTVSGVAVDSAGTVWVTDHGNNRVVKLAAGSNTQTVLPFTGLNTPSGVAVDSAGTVWVTDHGNNRVVKLAAGSNTQTVLPFTG-SGVAVDSAGTVWVTDHGNNRVVKLAAGSPFTGLNTPSGVAVDSAGTVWVTDHGNNRVVKLAAG........ 256
10 -6.8703sze_A mol:protein length:968 Serine protease espP  ali model follow..  11  290..................................................................................................KDLIFTGGGDILLKSSFDNGAGGLVFNDKKTYRVNGDFTFKGAGVDTRNGSTVEWNIRYDNKDNLHKIGDGTLDVRKTQNT-----TGEGLVILGAEKTFNNIYITSGDGTVRLNAENALSGG-KNGGTLDLNGYNQSFNKIAATDS..... 442
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.