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Query: 3k6c_A mol:protein length:95 Uncharacterized protein NE0167, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MANDGYFEPTQELSDETRDMHRAIISLREELEAVDLYNQRVNACKDKELKAILAHNRDEEKEHAAMLLEWIRRCDPAFDKELKDYLFTNKPIAHELast
1 -48.8003k6c_A mol:protein length:95 Uncharacterized protein NE0167  ali model  100  1MANDGYFEPTQELSDETRDMHRAIISLREELEAVDLYNQRVNACKDKELKAILAHNRDEEKEHAAMLLEWIRRCDPAFDKELKDYLFTNKPIAHE 95
2 -44.2005l8f_A mol:protein length:116 Rru_A0973  ali model follow..  54  3QSSNSTHEPLEVLKEETVNRHRAIVSVMEALEAVDWYDQRVDASTDPELTAILAHNRDEAKEAAAMTLEWLRRNDAKWAEHLRTYLFTEGPITA. 96
3 -43.7005n5f_A mol:protein length:98 encapsulated ferritin  ali model follow..  51  2GSSEQLHEPAELLSEETKNMHRALVTLIEELEAVDWYQQRADACSEPGLHDVLIHNKNEEVEHAMMTLEWIRRRSPVFDAHMRTYLFTERPILE. 95
4 -42.1005da5_A mol:protein length:116 Rru_A0973  ali model follow..  57  3QSSNSTHEPLEVLKEETVNRHRAIVSVMEELEAVDWYDQRVDASTDPELTAILAHNRDEEKEHAAMTLEWLRRNDAKWAEHLRTYLFTEGPITA. 96
5 -31.6005n5e_e mol:protein length:99 PFC_05175  ali model follow..  24  13..........DKPYTKEELMEILRLAIIAELDAINLYEQMARYSEDENVRKILLDVAREEKAHVGEFMALLLNLDPEQVTELKGGFEEVKEL... 94
6 -31.0002e0z_A mol:protein length:345 Virus-like particle  ali model follow..  22  1MLSINPTLNRDKPYTKEELMEILRLAIIAELDAINLYEQMARYSEDENVRKILLDVAREEKAHVGEFMALLLNLDPEQVTELKGGFEEVKELT.. 94
7 -27.3002hz8_A mol:protein length:115 De novo designed diiron protein  ali model follow..  15  27............EGDEQELARLIQEIVKAEKQAVKVYKEAAEKARNPEKRQVIDKILEDEEKHIEWLKAASKQGNAEQ................. 92
8 -25.1001vjx_A mol:protein length:157 putative ferritin-like diiron-carboxylate protein TM1526  ali model follow..  20  89............RRKDLTLKEVLDIAISVEKDSIILYYELKDGLVNSDAQKTVKKIIDQEKEHLRKLLEMKREST.................... 151
9 -24.7004r42_A mol:protein length:236 Alr3090 protein  ali model follow..  16  114..........SYLNEGGDVVRDLRANIAAEAGARQTYEELIKLSPDEGTKQTLVHLLTREISHTQMFMKALDSLGKL.................. 180
10 -22.6002fzf_A mol:protein length:175 hypothetical protein  ali model follow..  18  98..........RELEKVQDIIDLIRWAMKAEEIAAEFYLKLEEMVKEEEKKRLMRYLADMERGHYYTLRAEYELL..................... 161
11 -22.2001mft_A mol:protein length:53 Four-helix bundle model  ali model follow..  21  1...................MDYLRELYKLEQQAMKLYREASEKARNPEKKSVLQKILEDEEKHIEWLETIN........................ 52
12 -22.0001jku_A mol:protein length:266 pseudocatalase  ali model follow..  127........NAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEH.... 209
13 -21.8002oh3_A mol:protein length:167 COG1633: Uncharacterized conserved protein  ali model follow..  20  86..........NDIHYLMTPYHALRYARDNEIRGMEYYKEAAANSADPEVKRLGADFAAEEAEHVVALDKWIEKTPRPS................. 153
14 -21.7001za0_A mol:protein length:275 POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE)  ali model follow..  144..............EKYTQVETLVYMAFYERCGAVFCRNLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDETIAAIAAR...... 218
15 -21.4003q4n_A mol:protein length:193 Uncharacterized protein MJ0754  ali model follow..  100................KSEVDALKVGATIEDLDIADLEKWINKTDNEDIKFVYENLMKGSRNHMRAFVRMLNNYGSNYTPQY............. 165
16 -20.8003q4o_A mol:protein length:196 Uncharacterized protein MJ0754  ali model follow..  104...............DKSEVDALKVGATIEDLDIADLEKWINKTDNEDIKFVYENLMKGSRNHMRAFVRMLNNYGSNYTPQY............. 170
17 -20.2002cwl_A mol:protein length:302 manganese-free pseudocatalase  ali model follow..  136..........EYVFTSGNLILDLLHNFFLEVAARTHKLRVYEMTDNPVAREMIGYLLVRGGVHAAAYGKALESLTGVEMTK.............. 206
18 -20.2004di0_A mol:protein length:144 Rubrerythrin  ali model follow..  14  9..............KGSKTEENLKYAFAGESQANRRYLYFASKADVNDIAALFRSTAEGETGHAHGHLEYLEAVGDP.................. 74
19 -19.2003sid_A mol:protein length:180 Symerythrin  ali model follow..  10  116.................GLRRALETALEVETIESQAFAKLAAEQGNMEVATAFEAIVKSETKHANWVKRALENLLE................... 178
20 -18.5001j30_A mol:protein length:144 144aa long hypothetical rubrerythrin  ali model follow..  19  5..............KGTKTAENLKQGFIGESMANRRYLYFAKRADEPEIAGLLRSIAEGETAHAFGHLDFIRQGG.................... 68
21 -18.1004quw_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  20  96..........AAAAEGKVVTCLLIQSLIIECFAIAAYNIYIPVA-DAFARKITEGVVRDEYLHRNFGEEWLKANFDASKAELEEANRQ....... 172
22 -18.1004z5s_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  20  96..........HAFSEGKVVTCLLIQALIIEAFAIAAYNIYIPVA-DDFARKITEGVVKDEYTHLNYGEEWLKANFATAKEELEQANKENLPLV.. 177
23 -18.1002clb_A mol:protein length:188 DPS-LIKE PROTEIN  ali model follow..  18  111................KDPKEILKVLLEAEQCAIRTWKEVCDMTYDPRTYDLAQRILQEEIEHEAWFLELLYGRPS................... 172
24 -17.9002qqy_A mol:protein length:149 Sigma B operon  ali model follow..  16  84................EDVREMLEYARQSEYETIKRYEKRKEQAAMTELVVKLEDMIADETNHMEELDRLLNDKA.................... 145
25 -17.7005uxi_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  19  97..........TAAAEGKVVTCLLIQSLIIECFAIAAYNIYIPVA-DDFARKITEGVVKEEYSHLNFGEVWLKEHFAESKAELELANRQ....... 173
26 -17.7005uwz_A mol:protein length:243 Aldehyde decarbonylase  ali model follow..  14  97..........QAAAEGDLTTCMVIQALIIECFAIAAYNVYIPVA-DAFARKVTEGVVKDEYTHLNFGQQWLKERFVTVREGIERANAQ....... 173
27 -17.5005k53_A mol:protein length:262 aldehyde deformylating oxygenase  ali model follow..  19  122..........TAAAQGQIVTCLLIQSLIIECFAIAAYNIYIPVA-DDFARKITEGVVKEEYSHLNFGEVWLQAHFEESKAELEAANRQ....... 198
28 -17.3005k52_A mol:protein length:265 Aldehyde decarbonylase  ali model follow..  18  122..........VAAAAGNIVTCLLIQALIIEAFAISAYNVYIPHA-DDFARKITENVVKDEYLHLNFGEQWLKANFESAKDELERANRENLAIV.. 203
29 -17.0004pgi_A mol:protein length:250 Aldehyde decarbonylase  ali model follow..  18  112............LGQGKTPTCLLIQALLIEAFAISAYHTYIPVS-DPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELLEANRENLPLI.. 191
30 -16.8005xx9_A mol:protein length:167 Bacterioferritin  ali model follow..  15  81................QSVTEMFQADREVELEAIDRLRRGIEVMRDITSANVFEAILADEEHHIDYLETQLDLIE.................... 142
31 -16.8002vzb_A mol:protein length:170 PUTATIVE BACTERIOFERRITIN-RELATED PROTEIN  ali model follow..  20  101................FDSVSLLNQNVSSERCAILRYQEIANFTNDYTTCDIAKHILAEEEEHEQDLQDYLTDIARMKESFLKK........... 170
32 -16.7004kvr_A mol:protein length:244 Aldehyde decarbonylase  ali model follow..  17  110..........TALGQGKTPTCLLIQALLIEAFAISAYHTYIPVS-DPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELLEANRENLPLIRR 193
33 -16.6003gvy_A mol:protein length:161 Bacterioferritin  ali model follow..  20  81................QTLRETLDADLAAEHDARTLYIEARDHCRDYPSKMLFEELIADEEGHIDYLETQIDLMG.................... 142
34 -16.6003bkn_A mol:protein length:161 Bacterioferritin  ali model follow..  16  81................QTLREQFEADLAIEYEVLERLKPGIVLCRDATSARLLEQILADEETHIDYLETQLQLMD.................... 142
35 -16.6002wtl_A mol:protein length:173 BACTERIOFERRITIN  ali model follow..  16  85................QTLREQFEADLAIEYDVLNRLKPGIVMCRDTTSAVLLEKIVADEEEHIDYLETQLELMD.................... 146
36 -16.5001nf4_A mol:protein length:179 bacterioferritin  ali model follow..  15  86................QAVPVIYESDADQEDATIEAYSQFLKVCKDIVTARLFERIIEEEQAHLTYYENIGSHIK.................... 147
37 -16.5003fvb_A mol:protein length:182 Bacterioferritin  ali model follow..  16  96................QNVKEVLEADLKGEYDARASYKESREICDDYVSKQLFDELLADEEGHIDFLETQLDLLA.................... 157
38 -16.4001yux_A mol:protein length:202 Nigerythrin  ali model follow..  10  21..........DSKTSVGSTLENLKAAIAGETGAHAKYTAFAKAAREEQIARLFEATAAAELIHIGLEYALVAEMEPG.................. 90
39 -16.4003qb9_A mol:protein length:174 Bacterioferritin  ali model follow..  16  83................QTLREQFEADLAIEYDVLNRLKPGIVMCRDTTSAVLLEKIVADEEEHIDYLETQLELMD.................... 144
40 -16.3001jgc_A mol:protein length:161 bacterioferritin  ali model follow..  23  81................EGPRETLECDLAGEHDALKLYREARDYCGDIVSKNIFESLITDEEGHVDFLETQISLYD.................... 142
41 -15.9003hl1_A mol:protein length:317 Ferritin like protein  ali model follow..  13  2.........MPPVWTLPRLYQHFQGAIDLELWTIPYYLTVLYSIKDTVPYRLIQAAVYQEMLHAQLVSNIANAY..................... 68
42 -15.9005ux2_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  21  101.....................LVIQGLIVECFAVAAYRHYLPVA-DAYARPITAAVMNDESEHLDYAETWLQRHFDQVKARVSAVVVE....... 166
43 -15.8004am2_A mol:protein length:159 BACTERIOFERRITIN  ali model follow..  18  81................QTVKEVLESDLAAEREARALYQEGAAYAGDFPSKNLFEELMGDEEHHIDFLETQLDLVS.................... 142
44 -15.7001sof_A mol:protein length:156 Bacterioferritin  ali model follow..  15  81................EHTKEMLECDLKLEQAGLPDLKAAIAYCEDYASRELLEDILESEEDHIDWLETQLDLID.................... 142
45 -15.7005zur_A mol:protein length:158 Bacterioferritin  ali model follow..  18  81................EDVPELLACDLKLEQAAHATVREAIAHCRDYVSRDLFQDILDDTEEHIDYLETQIDLID.................... 142
46 -15.4004tof_A mol:protein length:158 Bacterioferritin  ali model follow..  18  81................ENTQEMLQSDLNLELCATKDLREAIVHCHDYVSRDLLKDILESEEEHIDYLETQLGLIQ.................... 142
47 -15.4001bcf_A mol:protein length:158 BACTERIOFERRITIN  ali model follow..  11  81................EDVEEMLRSDLALELDGAKNLREAIGYADDYVSRDMMIEILRDEEGHIDWLETELDLIQ.................... 142
48 -15.3004cvp_A mol:protein length:159 BACTERIOFERRITIN  ali model follow..  11  82................EDVEEMLRSDLALELDGAKNLREAIGYADDYVSRDMMIEILRDEEGHIDWLETELDLIQ.................... 143
49 -15.3003e2c_A mol:protein length:158 Bacterioferritin  ali model follow..  11  81................EDVEEMLRSDLALELDGAKNLREAIGYAHDYVSRDMMIEILRDERGHIDWLRTELDLIQ.................... 142
50 -15.3003is7_A mol:protein length:158 Bacterioferritin  ali model follow..  18  81................ENTQEMLQCDLNLELKATKDLREAIVHCHDYVSRDLLKDILESEEEHIDYLETQLGLIQ.................... 142
51 -15.2005d8x_A mol:protein length:158 Ferroxidase  ali model follow..  18  81................ANTQEMLQCDLNLELKATKDLREAIVHCEDYVSRDLLKDILESEEEHIDYLETQLGLIQ.................... 142
52 -14.6004etr_A mol:protein length:153 Putative uncharacterized protein  ali model follow..  11  5...........NQTNLDDTLDVLNDLLQTSKDGEAGFHACAEDLRDPQLKAAMLEQSRDCAAAADELERIVLEL..................... 67
53 -14.4002ib0_A mol:protein length:170 CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN  ali model follow..  10  12........PKRSPSEGSADNAALCDALAVEHATIYGYGIVSALS-PPGVNFLVADALKQHRHRRDDVIVMLSA...................... 75
54 -14.2004mud_A mol:protein length:235 Ring oxydation complex/ phenylacetic acid degradation related protein  ali model follow..  12  16...............TNTLVNIIELRADFELAMVEQYSPWLVNAPTVDSRLFVAKLVSDELNHGWQLVRLLEEFKVKDVI............... 80
55 -14.1003r2h_A mol:protein length:154 Bacterioferritin  ali model follow..  26  1............MQGHPEVIDYLNTLLTGELAARDQYFIHSRMYEDSKLYERLNHEMEEETQHADALLRRILLLE.................... 66
56 -14.1001oq4_A mol:protein length:363 Acyl-[acyl-carrier protein] desaturase  ali model follow..  14  186...................YLGFIYTSFQERATFISHGRQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKL..................... 243
57 -13.9001b71_A mol:protein length:191 PROTEIN (RUBRERYTHRIN)  ali model follow..  23  5..............KGSRTEKNILTAFAGESQARNRYNYFGGQAKKVQISDIFAETADQEREHAKRLFKFLEGGDLE.................. 70
58 -13.5005uxg_A mol:protein length:220 aldehyde deformylating oxygenase  ali model follow..  11  11.............EIREGIKYLSAHFYPASIMDRWKILKKLSFEKAKIIANYSLQQVIEEIEHFDFFNEYFKED..................... 71
59 -13.2003pvr_A mol:protein length:311 Phenylacetic acid degradation protein paaA  ali model follow..  13  30...............RKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDIYQK........... 98
60 -13.0002uw1_A mol:protein length:338 PLASTID DELTA4 MULTIFUNCTIONAL ACYL-ACYL CARRIER PROTEIN DESATURASE  ali model follow..  14  161...................YLGFIYTSFQERATFISHAKLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIAFADM...... 233
61 -12.5001nnq_A mol:protein length:171 Rubrerythrin  ali model follow..  4..............KRTMTKKFLEEAFAGESMAHMRYLIFAEKAEQENIAKLFRAIAYAEFVHAKNHFIALGKLGKTPENLQMGIEGETFEVEE. 86
62 -12.4004iit_A mol:protein length:320 Phenylacetate-CoA oxygenase subunit PaaA  ali model follow..  13  33...............RKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCARED............... 97
63 -12.2005ux1_A mol:protein length:237 tRNA-(MS(2)IO(6)A)-hydroxylase-like  ali model follow..  122..............EPQRMLDSFLVAGLIEARSHERMALLAEHSPDPQLRELYSDLLASEARHFGLYWVLCEQRYPREVERLEVLALAEVKALEG 204
64 -11.9003oj5_A mol:protein length:189 Ferritin family protein  ali model follow..  17  3..........EYEGPKTKFHALMQEQIHNEFTAAQQYVAIAVYFDSEDLPQLFYSQAVEERNHAMMLVQHLLD...................... 68
65 -11.6002lfd_A mol:protein length:115 Diiron protein  ali model follow..  11  29..............DEQELARLNQEIVKAEKQGVKVYKEAAEKARNPEKRQVIDKILEDEEKHIEQFASLVQQHLQDEQRHVEE........... 110
66 -11.5002jcd_A mol:protein length:345 N-OXIDASE  ali model follow..  11  195...................IAVLVWGAVAETCINALLALLARDATQPMHSLITTLHLRDETAHGSIVVEVVRELYARMNEQQRRALVRC...... 265
67 -11.5003qz3_A mol:protein length:184 Ferritin  ali model follow..  20  12...............SQAMVEHLNEQINLEFFSSNLYLQMSAWCEDKGFDGALRAHAVEEMQHMQRLFTYVSETG.................... 74
68 -11.2005u1b_A mol:protein length:189 MtrE protein,Ferritin chimera  ali model follow..  20  25...............SKDIIKLLNEQVNKEMNSSNLYMSMSSWCYTHSLDLFLFDHAAEEYEHAKKLIVFLNE...................... 85
69 -11.1004zlw_A mol:protein length:168 Ferritin  ali model follow..  11  1..............GSEELLDLFNRQVTQEFTASQVYLSASIWFDQNDWEGMMLAESAEEREHGLGFVDFANK...................... 62
70 -10.9002qf9_A mol:protein length:179 Putative secreted protein  ali model follow..  10  95MATDAEMKKLGTLDGKQAEVYYLQLMTEHHRGGVHMAKGCVERCTVGVEKRLARGMVESQESEIRLMADLLAE...................... 167
71 -10.9001jm0_A mol:protein length:50 PROTEIN (FOUR-HELIX BUNDLE MODEL)  ali model follow..  21  1...................XDYLRELLKLELQAIKQYREAL----EYVKLPVLAKILEDEEKHIEWLETIL........................ 48
72 -10.8002gyq_A mol:protein length:173 ycfI, putative structural protein  ali model follow..  11  14...............EDLLLHGLRDIYYAEQQITKALPKMIEQATNRDLSQGLTSHLEETQKQIERLDQVFKKLG.................... 73
73 -10.8001lt1_A mol:protein length:50 L13G-DF1  ali model follow..  19  1...................XDYLRELLKLELQGIKQYREAL----EYVKLPVLAKILEDEEKHIEWLETIL........................ 48
74 -10.7004zkh_A mol:protein length:169 Ferritin  ali model follow..  11  1..............GSEELLDLFNRQVTQEFTASQVYLSASIWFDQNDWEGMMLAQSAEEREHGLGFVDFANK...................... 62
75 -10.7004xgs_A mol:protein length:165 Ferritin  ali model follow..  18  3...............KPEMIEKLNEQMNLELYSSLLYQQMSAWCSYHTFEGALRRHAQEEMTHMQRLFDYLTD...................... 63

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.