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Query: 3kz3_A mol:protein length:80 Repressor protein CI, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80
# Score Template Links and tools%idFirst SLTQEQLEDARRLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVSVEEFSPSIAREIRLast
1 -44.8003kz3_A mol:protein length:80 Repressor protein CI  ali model  100  1SLTQEQLEDARRLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVSVEEFSPSIAREIR 80
2 -40.9001lli_A mol:protein length:92 PROTEIN (LAMBDA REPRESSOR)  ali model follow..  88  6PLTQEQLEDARRLKAIYEKKKNELGLSQESLADKLGMGQSGIGALFNGINALNAYNAALLAKILKVSVEEFSPSIAREIY 85
3 -40.9001rio_A mol:protein length:98 Repressor protein CI  ali model follow..  92  7PLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSIAREIY 86
4 -29.3002wiu_B mol:protein length:88 HTH-TYPE TRANSCRIPTIONAL REGULATOR HIPB  ali model follow..  12  2.MSFQKIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDAKNASP.. 78
5 -29.1001adr_A mol:protein length:76 P22 C2 REPRESSOR  ali model follow..  14  2........NTQLMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLL........ 65
6 -29.1003f6w_A mol:protein length:83 XRE-family like protein  ali model follow..  12  10.......ARYQALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIGTDPYALLSKLEAMTP 82
7 -28.8004z5h_A mol:protein length:72 Antitoxin HipB  ali model follow..  12  3....QKIYSPTQLANAMKLVRQQNGWTQAELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDAK...... 72
8 -28.7002ef8_A mol:protein length:84 Putative transcription factor  ali model follow..  17  6.......HRYRCLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVASRLGLPMDILLKDTY 78
9 -28.1004ia8_A mol:protein length:82 Regulatory protein  ali model follow..  20  2..SHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTAISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEIL 79
10 -28.0002b5a_A mol:protein length:77 C.BclI  ali model follow..  18  3....NEIEIKRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFRKMEEE.. 76
11 -28.0005k98_B mol:protein length:91 Antitoxin HipB  ali model follow..  12  5.MSFQKIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDTKNASP.. 81
12 -27.9004i6t_A mol:protein length:82 Regulatory protein  ali model follow..  19  2..SHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRAYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEIL 79
13 -27.9004i6u_A mol:protein length:82 Regulatory protein  ali model follow..  19  2..SHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTFISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEIL 79
14 -27.8003bs3_A mol:protein length:76 Putative DNA-binding protein  ali model follow..  10  7........NQQMMLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNVDPRQLING...... 72
15 -27.7004fn3_A mol:protein length:82 Regulatory protein  ali model follow..  19  2..SHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKALELIMKGLEVSDVVFFEMLIKEIL 79
16 -27.7004f8d_A mol:protein length:82 Regulatory protein  ali model follow..  20  5.....ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSANLTIKSLELIMKGLEVSDVVFFEMLIKEIL 79
17 -27.7003omt_A mol:protein length:73 uncharacterized protein  ali model follow..  13  1....SNAMTERKIFNRLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNVDVRELI........ 68
18 -27.6002k9q_A mol:protein length:77 uncharacterized protein  ali model follow..  15  2...........ELSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKGVDLNALFDRIIVNKL 70
19 -27.5003g5g_A mol:protein length:99 Regulatory protein  ali model follow..  19  13..SHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEIL 90
20 -27.3003mlf_A mol:protein length:111 transcriptional regulator  ali model follow..  9  7.LGTENLYFQSNAMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDDIF........ 77
21 -27.3002mez_A mol:protein length:106 Multiprotein Bridging Factor (MBP-like)  ali model follow..  20  1..ENAELEIVTDYYKIIKTAREQLGISQQQLAQKLKVSENIVKRFESGKLKPTISQARQLEKILGIKLVTPLEN...... 72
22 -27.2003bdn_A mol:protein length:236 Lambda Repressor  ali model follow..  92  6PLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSIAREIY 85
23 -27.1002xiu_A mol:protein length:66 CYLR2  ali model follow..  9  2............IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNCPLEDIFQWQPE... 66
24 -27.1003fya_A mol:protein length:99 Regulatory protein  ali model follow..  19  13..SHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDATYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEIL 90
25 -27.1001x57_A mol:protein length:91 Endothelial differentiation-related factor 1  ali model follow..  10  6....SGDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGK......... 72
26 -27.0001utx_A mol:protein length:66 CYLR2  ali model follow..  9  2............IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQWQPE... 66
27 -27.0001y7y_A mol:protein length:74 C.AhdI  ali model follow..  21  4..HHDHYADLVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRELF........ 73
28 -26.7003ivp_A mol:protein length:126 Putative transposon-related DNA-binding protein  ali model follow..  22  3..KKEDKYDFRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFF........ 72
29 -26.6003lfp_A mol:protein length:98 Csp231I C protein  ali model follow..  21  2............LIRRLKDARLRAGISQEKLGVLAGIDEASMNQYEKGKHAPDFEMANRLAKVLKIPVSYLYTPEDD... 70
30 -26.3005j2y_A mol:protein length:80 Regulatory protein  ali model follow..  12  1.MASHERTQPQNMAFRAKATRTARRESQETFWSRFGISQSCGSRFENGENLPFIYLLLHFYIEGQITDRQLAD....... 73
31 -26.1002kpj_A mol:protein length:94 SOS-response transcriptional repressor, LexA  ali model follow..  9  3.....KDKQKAIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNINKSDLIEDKKLNID 77
32 -26.0003op9_A mol:protein length:114 Pli0006 protein  ali model follow..  16  1...SNAMTIQHQFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSIDELVGYVQED.. 75
33 -25.9003vk0_A mol:protein length:114 Transcriptional regulator  ali model follow..  15  12..LPDEQDLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQLLLPPQERLK 89
34 -25.7001per_L mol:protein length:69 PROTEIN (434 REPRESSOR)  ali model follow..  25  1...........SISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDWLLNGTSDS.. 66
35 -25.5004o8b_A mol:protein length:122 Uncharacterized protein  ali model follow..  16  2............LGTRLKAARIRAGYSQKQLGMLVGMDSARMNQYERERHSPNMRTSEQLAMVLQVPMAYLY........ 65
36 -25.5002ewt_A mol:protein length:71 putative DNA-binding protein  ali model follow..  27  2.....SSEYAKQLGAKLRAIRTQQGLSLHGVEEKSQWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQELLP....... 71
37 -25.3004ghj_A mol:protein length:101 Probable transcriptional regulator  ali model follow..  20  24.....AAALAEEIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAEKGKVQLDIMIAILMALDLTEQIDLFIPK...... 92
38 -25.2005uk3_A mol:protein length:176 Uncharacterized protein  ali model follow..  16  10..ISSANYARQIMSNQFIKAKESKGLTYQQMAQLLSVNKVWLTSVLHGQNCCDIQLAHRICDTLGISHEYANELTSIPLR 87
39 -25.1001zug_A mol:protein length:71 PHAGE 434 CRO PROTEIN  ali model follow..  16  2..........QTLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTK-RPRFLFEIAMALNCDPVWLQ........ 62
40 -25.0002l49_A mol:protein length:99 C protein  ali model follow..  9  2.........SNTISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRSTPPTDVMMNILQTPQFTKYTL......... 63
41 -24.8001sq8_A mol:protein length:64 dh434  ali model follow..  27  3............MGERIRARRIQLGLNQAELAQKVGVDQQAIEQLENGKAK-RPRFLPELARALGVAVDWLL........ 61
42 -24.8001b0n_A mol:protein length:111 PROTEIN (SINR PROTEIN)  ali model follow..  16  2............IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNQTNPSIQFLEKVSAVLDVSVHTLLDEKHET.. 68
43 -24.8005a7l_A mol:protein length:80 CI  ali model follow..  17  3..........TDTSNRLKQIMAERNLKQVDILNLIKLSKSTLSQYVNSVQSPDQNRIYLLAKTLGVSEAWLM........ 73
44 -24.7003eus_A mol:protein length:86 DNA-binding protein  ali model follow..  16  10.......PEHVYLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACEG.............. 68
45 -24.7003kxa_A mol:protein length:141 Putative uncharacterized protein  ali model follow..  17  56.....DKIALKAGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEVRAAFERRYE 130
46 -24.7002r63_A mol:protein length:63 REPRESSOR PROTEIN FROM BACTERIOPHAGE 434  ali model follow..  28  1...........SISSRVKSKMIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDWLL........ 60
47 -24.3002ofy_A mol:protein length:86 Putative XRE-family transcriptional regulator  ali model follow..  20  5PLTAEELERGQRLGELLRSARG--DMSMVTVAFDAGISVETLRKIETGRATPAFFTIAAVARVLDLSLDDVAAVVTFG.. 81
48 -24.3003f51_A mol:protein length:117 Clp gene regulator (ClgR)  ali model follow..  14  17PRKAPEPLLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVADVLIEAAGS.. 94
49 -24.3002p5t_A mol:protein length:158 Putative transcriptional regulator PezA  ali model follow..  11  2............IGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDIVGE...... 63
50 -24.3003zhi_A mol:protein length:83 CI  ali model follow..  17  4..........TDTSNRLKQIMAERNLKQVDILNLIKLSKSTLSAYVASVQSPDQNRIYLLAKTLGVSEAWLM........ 74
51 -24.0003zhm_A mol:protein length:79 CI  ali model follow..  17  2..........TDTSNRLKQIMAERNLKQVDILNLIKLSKSTLSQYVNSVQSPDQNRIYLLAKTLGVSEAWLM........ 72
52 -23.9002jvl_A mol:protein length:107 TrMBF1  ali model follow..  11  27....KPKTVGKEVGKAIEQGRQEPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLNVKLRGA......... 95
53 -23.8004pu3_D mol:protein length:118 Toxin-antitoxin system antidote transcriptional repressor Xre family  ali model follow..  9  36....ASPLNQQSLGLLIKERRKSAALTQDVAAMLCGVTKKTLIRVEKGED-VYISTVFKILDGLGIDIVSAQTSDTET.. 108
54 -23.5004y42_A mol:protein length:156 Cyanate hydratase  ali model follow..  17  4..SLHYSSPRETLTDTIMMAKIRKNLTFEAINQGTGLSLAFVTAALLGQHPLPEQAARVVAEKLDLDEDAIR........ 73
55 -23.5005woq_A mol:protein length:120 Transcriptional regulator ClgR  ali model follow..  8  9..........EVIGDVLRNARTDQGRTLREVSDAARVSLGYLSEVERGRKEASSELLSAICDALDVPLSRVLTDAGES.. 76
56 -23.3006b9s_A mol:protein length:457 Methylphosphonate synthase  ali model follow..  11  4KIDFKPDSYLIRSGNNFLGILNDIKRRPEDAANELGVSIEEINSIISGKQKISPSLIEKAVNIWPVNERDFYIVSDDC.. 81
57 -23.0003qq6_A mol:protein length:78 HTH-type transcriptional regulator sinR  ali model follow..  15  2.........SSMIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNQTNPSIQFLEKVSAVLDVSVHTLLDEKHET.. 71
58 -22.6001y9q_A mol:protein length:192 transcriptional regulator, HTH_3 family  ali model follow..  13  1.MSLTDVMFKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFAN...... 73
59 -22.4001dw9_A mol:protein length:156 CYANATE LYASE  ali model follow..  26  1.MIQSQINRNIRLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSIL........ 73
60 -22.3003b7h_A mol:protein length:78 Prophage Lp1 protein 11  ali model follow..  22  3.......TDGEFVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSKPTITTIRKVCGTLGISVHDFFD....... 69
61 -22.2001zz6_A mol:protein length:198 Hydroxypropylphosphonic Acid Epoxidase  ali model follow..  16  2...SNTKTASTGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGELTLTQLGRIAHVLGTSIGALTPPAGND.. 77
62 -21.7006b9r_A mol:protein length:450 Hydroxyethylphosphonate dioxygenase  ali model follow..  11  7..LGSDAARAARAAALLRAAANDLKRNDRAAEADLGLPPGSFGDYVSGRLPITWDLISRAAQAWPLNERDLLPIHNDT.. 82
63 -20.8002qfc_A mol:protein length:293 PlcR protein  ali model follow..  16  4..........EKLGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYS.. 70
64 -19.9002aw6_A mol:protein length:317 PrgX  ali model follow..  11  2..........FKIGSVLKQIRQELNYHQIDLYSGI-MSKSVYIKVEADSRPISVEELSKFSERLGVNFFEIL........ 62
65 -19.9002a6c_A mol:protein length:83 Helix-turn-helix motif  ali model follow..  16  3..SDKIMKMRSQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKDLFSLESLIDMITSIGLKVE........... 70
66 -19.9003rzz_A mol:protein length:446 Hydroxyethylphoshphonate Dioxygenase (PhpD)  ali model follow..  10  226....KALSGKVSAGSVLDLFLARRAHTRTSAAEAAGVPPADLEAALRSASETGLTVLRTLGRALGFDYRVLLPADDQH.. 300
67 -19.9004yv6_A mol:protein length:284 Transcriptional regulator  ali model follow..  18  3..........KELGKTLRRLRQGKQVSISSLADEH-LSKSQISRFERGESEISCSRLLNLLDKLNITIDEFV........ 63
68 -19.6002mqk_A mol:protein length:65 ATP-dependent target DNA activator B  ali model follow..  7  4........NISDIRAGLRTLVENEETTFKQIALESGLSTGTISSFINDKYNGDNERVSQTLQRW................ 59
69 -19.5005v5t_A mol:protein length:306 Conserved domain protein  ali model follow..  17  1...QKEYMEYRPLGEEIERIRKGKNIPLRVFDEN-GVSSRSYQRFVQGNSELRISDLAIIVEILSISPMEMT........ 68
70 -19.4004ryk_A mol:protein length:306 Lmo0325 protein  ali model follow..  14  2..........GSYGELIREIRLSKGLTQKEVYTGI-ISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDEFF........ 62
71 -19.1005fd4_A mol:protein length:324 ComR  ali model follow..  10  21........NDKEFGQRVRQLRESASMTREQFCDELELSVRQLTRIEAGASKPTFSKIQYIATRLGMGLYELMPDYVSL.. 91
72 -19.1005jub_A mol:protein length:310 Transcriptional regulator  ali model follow..  11  1......MNLKDSIGLRIKTERERQQMSREVLCLDGELTVRQLIRIEKGESLPSLDRLSYIAKRLGKSMTELLDQDNIT.. 73
73 -18.5002o38_A mol:protein length:120 Hypothetical protein  ali model follow..  23  31..DAEERQTKLRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKEGFSVERLMTLLNALDQDVE........... 98
74 -18.0001s4k_A mol:protein length:120 putative cytoplasmic protein ydil  ali model follow..  8  1.........AMMNALELQALRRIFDMTIEECTIYITNNSATWQRWEAGDIPISPEIIARLKEMKARRQRRI......... 64
75 -17.7005y69_A mol:protein length:151 chain A  ali model follow..  11  2..........SMTIKLLDEFLKKHDLTRYQLSKLTGISQNTLKDQNEKPNKYTVSILRSLSMISGLSVSDVLFELED... 69
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.