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Query: 3liu_A mol:protein length:402 Putative cell adhesion protein, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GDDNEIEIPKAPVLEKAQLALAIKSEEGAVTKTGETTPTDADVNTLTVGVFGVDGWSVIYTKDATPNSDGTKDVGPQEVYAGEAHVVVVANAAPVIQTELAKAKDITDFIETTINLSDETLTKGLTMSSKVLDVTLVANTTNYIGYDDEVGDITVKDISGKEVYGAGPVPLVRDVASIALAGADIGNPENANYESKSFVLKEVFIASAKGVSSVASTEEWGTIEKDFFGDTHFGYLDYKVGLLFLTSPNNIDEGSYKKGLQTKYDALAKKHVENDPALNHEFYVYENTKGEVKSGESNVNEAYANHTLLIVKGDYTYLPQGAKESITKENCYYAIPVGEEVTIDGTEKRSKFYVQRNYKYEISLTIIGPGSEIPYDPMISTNVSASVKVEPWNVKTIHEEVELast
1 -136.0003liu_A mol:protein length:402 Putative cell adhesion protein  ali model  100  1GDDNEIEIPKAPVLEKAQLALAIKSEEGAVTKTGETTPTDADVNTLTVGVFGVDGWSVIYTKDATPNSDGTKDVGPQEVYAGEAHVVVVANAAPVIQTELAKAKDITDFIETTINLSDETLTKGLTMSSKVLDVTLVANTTNYIGYDDEVGDITVKDISGKEVYGAGPVPLVRDVASIALAGADIGNPENANYESKSFVLKEVFIASAKGVSSVASTEEWGTIEKDFFGDTHFGYLDYKVGLLFLTSPNNIDEGSYKKGLQTKYDALAKKHVENDPALNHEFYVYENTKGEVKSGESNVNEAYANHTLLIVKGDYTYLPQGAKESITKENCYYAIPVGEEVTIDGTEKRSKFYVQRNYKYEISLTIIGPGSEIPYDPMISTNVSASVKVEPWNVKTIHEEVE 402
2 -90.8004q98_A mol:protein length:369 Major fimbrial subunit protein  ali model follow..  20  1GKDNE---AEPVVETNATVSFIIKSGE---SRAVGDDLTDAKITKLTAMVYAGQVQEGIKTVEEDGGVLKVEGIPC--KSGANRVLVVVANHNYELTG-----KSLNEVEALTTSLTAENNAKNLIMTGKSAAFTIKPGSNHY--------GYPGGTASDNLVSAGTPLAVTRVHAGISFAGVEVNMATQYNYYSFKPADAKIAALVAKKDSKIFGNSLVSNTNA--------------------YLYGVQTPAGLYTPDAAGETYELEASLNTNYAVGAGFYVLESKYDASNEL---------RPTILCIYGKLLDKDGNPLTCDGDGTTYYPVLVNYDGNGSGAITQGQNKIVRNNHYKISLNITGPGTNTPENPQPQANLNVTCQVTPWVVVNQAATW. 369
3 -84.5004jg5_A mol:protein length:355 Putative cell adhesion protein  ali model follow..  16  1GKDEDPVLPLEGAKLSVAVKASGTATKAYNPNDVNELEGEAYINNLAVVVFNETGTELLGYKWESGAEHSAIIADVPTTKAVRARIIVLANVPRDL---LSTVSTYDEFQTRLVDLSSQSQTNLTMSSQVIVTKSALSEEDNYLG--------YTDLGDQNVDGISDPILLTRVAARIDLVNISTRFAGT-PFAGREVRIDAVGIYNMKTKSYYFSEAD---------------------------WGETEAPDAVRNSEDTSFEDLLVNDGTSISNTPFVHYVMENMKSD-------------DHTMIAVKATLRGNSSY-----QDHTKIFTAVINAGGLQ---NGYDHNFIRRNYVYRLRIYFDGESFDNDPEPEVDTNLNIAVQVVGWGPVMQHPVID 355
4 -82.6004gpv_A mol:protein length:348 putative cell adhesion protein  ali model follow..  16  1GNDEVENLGNNVPGEQAVLTIKLKGDGDNQAQSPATDTEDAVINNYLVFLFREGGALDCAPYEGSSNAA----ATITTGTTAAKKAYVVANTGALAGGLFATVKTETDLLAVTGSLMDNTTKTNLWMSGES------------------------EVKFNGGTNAQVTVSLSFVAAKIQLIVKDNRKNMTG--GTITITDDAAVLLFAGKKGRFFGSAAEKVTQNEFYTGFNQ-------------YTGAFDSGVTTSTALSDAVSPGDFTINAGSTVFNHFYTFGNDGTT-------------QPTILAIKSTKTVGG-------TSSPIFYPILFT--------NTDARHTIEPGKSYTVTVTLNGDVTTDPEEPVVSSSIEVTVTAAQWVTQPVDKEFN 348
5 -75.8003up6_A mol:protein length:347 hypothetical protein BACOVA_04078  ali model follow..  11  1................GDVAYELPAQLSIDLVNNGDVEQQEKINSMRFIVFGSTPGGVRLDVNEHILLSTPETATDIDTSSNDILVVVIANEPQSLTSQLDGIANLLTLQEMIYDISSIISATGMPMTGVIRDISIAPD-----------------------ETKTVQMVIERAVARVDVFIEAID---GGAVTGYTAGSTSVTLHNFSHDSYFVMGNVGNGTRDNADSSKNYGKVKEDV-------SESNLLTHSWTAATTETWAYSSAPGAENRKLLCSFYTAERLFKSDY----------SDRLSISMANVLKGPSDV-----TGITGKVIESVTKVDGTGSPTAQPFTEIRRNNVYQVTARVGKIGI-----------QILTISVEDWGERDIDLDMD 346
6 -68.5004jrf_A mol:protein length:508 putative cell adhesion protein  ali model follow..  14  2ACSNDEEMATGGDGREAYMSVSVAMPKSTGTRALGGTADEQNVKEVLLALFDASDVCLETKTLVGGANKAGYDGKAFKVPSATAKVLAVVNPSDKFKTACVASASWSAINGAVEQTLDETSKNNFMMINAGDNANPTNGALVTANVKVVDGIPDVATAISEAQADRSMIYVDRVVAKVSLGTNPDGLKVP---AGVTCTFGDWALNITNKSMFPYSEIVMPAGGST--------------GADYRIDPNYELAGFDVSQFNYLKVADDGTLPADFSAMADSKYCLENTMAADAQTQA-------QTTSAVASAVYTPGSFTVGESFQKGVCYYNILIHHDDAITATMAHGKYGVVRNNWYTLTINVKQPGTPDPGEDDDDKELSVEITVNPWTTWSQGVDL. 508
7 -64.5005nf4_A mol:protein length:451 Minor fimbrium tip subunit Mfa3  ali model follow..  14  19GAMRGVDPQPDPLQPDVYLLVNARAAHTNGEESMDAEDFEDRVHSLAMLVFDSNTGEKVAEHFSSSIGSGTSTVFTVKLKPGQRDFFFVANIPNMQ-TAMASIVNKSDMNHFMQVFRDATNNNGFPMSRMYSNQTVTIG-------------GTITQPLPFKPDGENNVKLQRVVAKLDVNI-----------VEGVENLQKIELCNANVHYRLVPNQSEPIQFYG-----------------------------------------PVELRRVGATNQWLGYMPEAIVESTKWWGNTGNAENKPINFFRLTGLVYDVPIITHEGAIPGGQYLPF------AKGLLADKPSYTVYRNRHYIYRIKTLPDK------------IEVKYSICDWNIVTNDTYMG 350
8 -60.4005nf2_A mol:protein length:501 Minor fimbrium subunit Mfa1  ali model follow..  12  5.....................................AGKDKIEKVSIYMVPQGGPGLVESAEHNAILKPKKGIKVNSAVGKTVKVYVVLNDIAGKAKALLANVNAADFDAKFKEIKNGTTDETIMMTCLQPSDALTIEEAA-----------VSEANAIAGIKNQAKVTVERSVARAMVSTKAQIGEIAAGSVLATITDIRWVVAQGERRQYLSKKRGTVPENTWVTPGSGTNATEYYDYAGLWEDHNTNEAVISGTQVPTLADYQLQDVTGELANALSGKFLLPNTH-KSGANAASSDYKRGNTAYVLVRAKFTPKKGMKAHKYVKGKVLYYAWLNPSTTSP--DSWWNSPVVRNNIYHIHIKIKKLGFNDPENPLPDQDMSVEVTVLPWKVHSYEVDL. 501
9 -58.4005nf3_A mol:protein length:523 Minor fimbrium subunit Mfa1  ali model follow..  12  1.............AAKSYMSMTLSMPMGSARAGDGEWAGKDKIEKVSIYMVPQGGPGLVESATHNAILKPKKGIKVNSAVGKTVKVYVVLNDIAGKAKALLANVNAADFDAKFKEIKNGTTDETIMMTCLQPSDALT------------IEAAVSEANAIAGIKNQAKVTVERSVARAMVSTKAQSYEIAAGSVLATITDIRWVVAQGERRQYLSKKRGTVPENTWVTPGSGTNATEYYDYAGLWEDHNTNEAVISGTQVPTLADYQLQDVTGELANALSGKFLLPNTH-KSGANAASSDYKRGNTAYVLVRAKFTPKKGMKAHKYVKGKVLYYAWLNPSTTSP--DSWWNSPVVRNNIYHIHIKIKKLGFNDPENPLPDQDMSVEVTVLPW.......... 523
10 -52.1005dhm_C mol:protein length:282 Immunoreactive 32 kDa antigen  ali model follow..  13  1...............................ERNQGSAAERLITNLYLLLFDQSGANPAKYYIAGLPDDMKVKLDMTQSEAGERKVYVVANVDNAVKTALDAVANESDLQTVKRTTASTDIASPFLMSGNKT-------------------------HDFLANRLLDNVPLVRAIAKVELNISSEKFQIVPIIVNGSLSEFKFRYVNFDKETYVVKPT------------------------------TKPDNLISSANGVWPQITDWTVWGASLNTSPAPDAGTGYTLDANGKVTA-LNERDSKGATVEVALPRV-----------DDGTLPPPEFGP----ELYRLPLPDKILRNHWYKYEVEI.................................... 282
11 -51.9004rdb_A mol:protein length:305 Immunoreactive 32 kDa antigen PG49  ali model follow..  12  1GDRS-----------EISIRVDDFTKTGEAVRYNQGSAAERLITNLYLLLFDQSGANPAKYYITGNPDDMKVKLDMTQSEAGERKVYVVANVDNAVKTALDAVANESDLQTVKRTTASTDIASPFLMSGNKT-------------------------HDFLANRLLDNVPLVRAIAKVELNISSEKFQIVPIIVNGSLSEFKFRYVNFDKETYVVKPT------------------------------TKPDNLISSANGVWPQITDWTVWGASLNTSPAPDAGTGYTLDANGKVTA-LNERDSKGATVEVALPRVDDGTLPPPEF---------------GPELYRLPLPDKILRNHWYKYEVEI.................................... 305
12 -44.1003r4r_A mol:protein length:296 hypothetical fimbrial assembly protein  ali model follow..  13  1G---EVPIGFDTDELSFDMSLVLLTGDMQTKASDPATTEELTIQNCHVAVFDKDGKRIYFKNFYSKDLGEMEGVRTFGKEDKKVSVLVVANANNANNSPFDNLTTYDGVDNSYTAKTIAKTASLLVKIGKSE-----------------------TTLKYNQDNAPVTVSLIQLSAKIEYTGVYKKENGELL---EGFSLTKVAGLNASSKITIFNTSA....................................................................................................................................................................................... 210
13 -32.4004qdg_A mol:protein length:310 Putative adhesin  ali model follow..  12  2ERIYEDLAP----PHGVSLRFIYDYN------MEYANAFAKKVDCLTLLVYDENGNYVDTRIVTGTELQDENYRMKLDLKQGNYHFVAYGGLACNKSSFLMKPGEGTGYTDLQVELDSECLTNPRRKNLH-----------------------GELTLATADLYSEGTVEMMKNTNNIRVVLQQMNGEPVDDKK-------EFEITDDNILFSYDNN-------------------------------LENGMVTYTPWAQGQASAGFTDEGREVVVAYAELSTSR-------------MVRDWYSPKLTVRRK------------ADGVEIINIPLINLKSDLYASMDSQEFLDRESEWSMIFFLSPNL----------EWIKTYIKINDWTVRINDIR.. 309
14 -31.6003gf8_A mol:protein length:296 putative polysaccharide binding proteins (DUF1812)  ali model follow..  11  3SCD------EDLPECRLSVKFKYDYN------MEFADAFHAQVDKVELYVFDKNGKYLFKQAEEGSALSTGNYLMEVELPVGQYQFMAWAGARDSITSLTPGVSTLTDLKLKLKREASLIINKR-LWYGEVINVNFDGTV-----------------------HQTETINLIRDTKIVRFGFQSYTGSWTLDMNDYDYEIIES----------------------------------------------------------NGHLGHDNSLLDDDVLSFRPYYMEQKDPATAYVDMNTMRLMEDRKTRLVL------------TEKASGKRVFDINLIDMTNAEGKNLSTQEYLDRQSNYHIIFFLSE------------SWLAVQIVVNGWVHRIQEEN.. 295
15 -26.2003pay_A mol:protein length:314 putative adhesin  ali model follow..  12  8.........EDLPRCELWLEFVFDYN------MEYADAFNPQVKSVDVLVFDSDDKLLFTKSVKVAAVGGNRMSLTDELDFGSYKVLTVGSLSDRFRLSDNAGNKLVPGTTTLQQVIVSLKRETGGVNFEFQHL--------------FGEVVEVDHLPSNTNHKIYPVNLIRDTNRFNLALMGYE-ENKVDGTQYTFEIQAPENAVYSWENEPTGQG-----------------------------------------PITYVPYYTGPGEISDVVMSARLNTMR-------------LNRSGWDYKFIIRDA------------NTEAEVWSYNLMTVSRYDGTELPFQEYLDRQSEWNLVFTVVEKN--------GGGFLQIGIVVGTWIHWLHGMEV. 314
16 -22.8005nfi_B mol:protein length:281 Minor fimbrium anchoring subunit Mfa2  ali model follow..  12  4...............GVYVNFYSQTEC------AENPSYPAEVARLNVYAFDKDGILRSANVFEDVQLSAAKEWLIPLEKDGLYTIFAWGNIDDHY--------------NIGEIKIGETTKQQVLMRLKQDGKWATNIDGTTLWYATSPVVELKNMEDGADQYIHTRANLREYTNRVTVSVDSLPHPEN-----------EIKLASSNGSYRF------------------------------------------------------DGTVAKADSTYYPGETKVVGDSTCRAFFTTLKLESGHENTLSVTHK------------PTGREIFRTDLVGAILSSQYA--QNINLRCINDFDIRLVAH-------CNCPDDTYVVVQIWINGWLIHS...... 280
17 -20.8003t2l_A mol:protein length:308 Putative cell adhesion protein  ali model follow..  9  1GSREMDDGRWKASALRVPLQVSSAVIKQEVVTRLAPDPVPLTEGAIGIFLSGTEPESGQEDSGYKVIDNRKYVYSE--GPPTANDTIYLVGNDADVCAYYPYKDSYTDKTVIPLQSQDYVETEDIYYALN---------------------------TMINGFTPAITFDMVHAYSLVELKISRENYFMPCEISKITLKNSNLI----------------------------------KKGTINIAVDGSIHSSETGNYDLTTVTDASPHTLSVGESYVCRVLMIPVPLKIERT----------------------------DAEGGEFGLSVSLVIDGQQMLVEIPYSELGEFRQGEKYVIGLKIKGTE------------IVPTVKALEWEDEEVNYPVE 308
18 -18.6004k4k_A mol:protein length:282 Putative cell adhesion protein  ali model follow..  11  1GGENTPQPTDGR------VALEATSGIRMNTRAYDKTWEAG--DAIGIYMLNGDATDGNGNRKYTTAQTAENGSFTAAEGQDASQRDFVAYYP------YRETLADGNVYTVDVSVQTPQKDIDLMGAAKVEGK--------------------------DKTDPKVAFVFTHKLVKLDITIKA----DGTSLTDADLAGTTVSISNQQTAATYNVVTGG------------------------------------------------------------------ATVTTGTTKEIVLHTDGLKAEGIVLPAASTAGMALTFTVPGLEGQAFHWDV--------NSAAQSKAFVAGSKYLYTITISKAG------------VEVSSKVEDWTP-GETGNAE 282
19 -18.5004qb7_A mol:protein length:359 Uncharacterized protein  ali model follow..  10  1GEMTEMNPDTNRT-------IGLDVYTEVQTRGTETTTSTKANAGFGIFAYQTSSAGWNSEKGNTTPNNEHATWTSDSWGYTNLRFWPIDDKKITFFAYAPYESKPEVGTDQKITLSGQNAKGAPTITFEVKTSNNWKDMIDLV----TDCHTAIQDQTNESNKGTVQFKFSHVLTQIANIKVKPDVNLG--------TDTKIFVTGLKLDPGSTTLYNKAVYKFDNDTEAISPDASYFSTEQDLSDFLNKTTTDQWGYNKSSINVSDDQNATALFSDTEALYFIPVNNKNGTTNAGD----------LKLKINYDIVTKVTDTSNLTST-----------ITNKEVSLPKNTFKKGTKHTYVLTIKM----------NAIKITVEDNMEGWTD-DSDINVE 358
20 -15.6004h40_A mol:protein length:327 putative cell adhesion protein  ali model follow..  6  2AAGSPEEDMEDRVRIDPVAGGYYPSISPSAQTRGATPDGETL-STIRLVVYDDAKNLLEEYEVDDNGAVISSSSTPLYMKAGTYYFRILSPAKALNSKGFVNIGNGEYLLATDDRYTQTAMTAVTITKIDEGG-------------------------TLNNVQTLYLPPIINQTARMQFTVRAGE-----GVHTLEMLAEGIEISGIQQPLDNTTSFDWVNGDVLPVKVGD------------------------------------------------------QSASVRITQATRNADNSLVAHTGVL------------TDARSHSISVLLNLKVNGNPTQQMLLTGLYLTAGHSYNYTATVKISNG-----------TVLTWQNRSWTENVVMDK.. 327
21 -14.9005cag_A mol:protein length:318 Uncharacterized protein  ali model follow..  15  5GCSRRDILDDYPVS---GVDIKLD-----------DGVTDQLPEGVRVIFYPKNGDGRKVDKYLSVRG------GEMKVPPGRYSVVVYNYNTESI--RIRGEESYETIEAYTGNCNGLGIEGTEKMVWSPDSL---------------VLNIDELKIEKSEEVLRLDWKLESVVKKYSFAVEAKGLE--------YVATVVGSIDGLSDCYCIGKGRGVCSSQPIYFEVKKGDNKVTAFFTAFKQVK-------------------------------------EMTMPTRMSTSERETSSEKGAIILILKFIKTD----------NTVQEATIDVTETLENAGTGEDGKPTPPPEIELPPDDKIEVDKPETPPN--PDGGGGMGGNVDGWGPDNVELPVN 318
22 -14.7003ufi_A mol:protein length:297 hypothetical protein BACOVA_04980  ali model follow..  10  1GDEESGKADRAYKPIEIYGNINEVVNNVQETRAVGAAWGSD--DRIGVTVEADEDNRNETGGSFRVVNEGSTDNNIRLKGEGEFTLNAYYPYQGANGTLPGTEGVIAKTISGADQTTDKQPQIDFLFAQA----------------------------TGVRAESPVTFDFSHKMTKIILKFKATN--------GATLNNMKVYLKSLQLEGSFNVTTGEAVAKSG-----------------------------------------------------------ATPNSELSMDIAKPAEGEMTASIILFPQD------------MPEKVLLEVRMNDETYTQYMPVQN---LESGHAYPYNVTFENPA------------MTIKAEIEDWIVEDDDVTAS 294
23 -14.2003sy6_A mol:protein length:291 Fimbrial protein BF1861  ali model follow..  9  1GEQED------KVSGEKTLAVVSASSDDRPSTRGIINDNTYALG---VFRTTANTYAPLYNVKHIYSGGEWGADDVIKVDYRNASFFAYY-----YHTATGNYAGLAGGTTLTLQAQLFNAGEDICYGAG---------------------EASGGGPVSVYNPFVEFLNMKHAYARLRLTLTRGEKFDKTKKCNIQNITFKSNNANFYLTRSLDIASTAGATGGSA----------------------------------------------------------VAAGYVHNPNVNIATGKSVTYEYMFPPQPLDGSKLTILVTVDGVTRSCDI------------STLGSSLDSGKYYGVSLTFTDVG------------IILSAVVTVNNF-NTQVDTE 290
24 -11.3004dgu_A mol:protein length:247 putative cell adhesion protein  ali model follow..  8  1GDELQ-----ETSKEATNFSISIDDALSDPLTRTSNDLFPAR-NSITTGEVISMAASGQDYTPFIVGKDSRAWN---EIGTATGTVTFYAHYPALTDEAATRSGGNKRYLKGGQEH--------------------------------------FGTAEAAPGSQNVSLKFKRMTVPVIILDENDR----------PYEGEAKVELSLKNEGTQDLLNGT------------------------------------------------------------------EINENALSENIEVKKVSEGVTTNVLPQKINAGEEIGTITVGGVTQKISAV-------------EDLDLKAGSTLSVRLSKKFGG------------GIIDGNVPLYR......... 247
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.