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Query: 3ljy_A mol:protein length:243 putative adhesin, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GAADHVKGDGKLTSKKISVADYNEIKVDGVIDFNYEQSDDPSTVEVTVDQNLHPYVNIEVKDRVLTIAFKGAKVDHFTKFIVKTNSKWLAAAKVSGNANFMVNSPLTGDETVIKANANSLVQLKETVTVGKLDLNVSGSANMVVNHLEADKIECDIDGSGSITIKKGNAKEGDYSIVSSGDIHAFGLAVPQLSCKVTGNGLAEVHATDNLKANVVGKGNIRYKGPTAVQQRIIGKGTVEEVKELast
1 -78.6003ljy_A mol:protein length:243 putative adhesin  ali model  100  1GAADHVKGDGKLTSKKISVADYNEIKVDGVIDFNYEQSDDPSTVEVTVDQNLHPYVNIEVKDRVLTIAFKGAKVDHFTKFIVKTNSKWLAAAKVSGNANFMVNSPLTGDETVIKANANSLVQLKETVTVGKLDLNVSGSANMVVNHLEADKIECDIDGSGSITIKKGNAKEGDYSIVSSGDIHAFGLAVPQLSCKVTGNGLAEVHATDNLKANVVGKGNIRYKGPTAVQQRIIGKGTVEEVKE 243
2 -75.6004opw_A mol:protein length:241 Uncharacterized protein  ali model follow..  71  1.GADHVKGNGKLSTKKITIDDFNAIKFDGVIDFNYEQSESTPHIEITVDENLHPYVNIDIQDRVLTVGFKGAKVDHFTKFIVKTNSKWLKEVKASGNANFIANSPLKGDELKINANSNCLVQLKQKVEVGKLDLNVSGSANMVVNELKTDKLECSINGSGTINLKAGNAEEADYSITTDGEIMAFGVAVPEVNCKITGKGSAQIHPTDNLKATIVGKGNIRYKGPTAVQQKVIGKGTVEEVK. 241
3 -68.5003jx8_A mol:protein length:250 Putative lipoprotein  ali model follow..  31  3.ADKRIDGNGNPETREIKISDYDEITFVGSADFEYEQSDKAPYLSVTIDENLFDYLVTEVEGGTLKIYPKSIYDLRPTVYKIKSNSKELKELNTVGSGSFIISKPTKVNRMEINMAGSGNVELRGPVKGYKLECNMAGSGNIIAKDIQLDNLSCSLASSGEIEV-IGTVDRASFNVAGSGEIKAFDCQARKAECNIASSGEISVYATQILDANIVGSGEIHYKGDPEISKSIMGSGSINKVK. 250
4 -65.3003lyc_A mol:protein length:241 Putative pectinase  ali model follow..  27  1......GGDGNITTENIPVSEYDCLELEGGGMVVNTQSDAPEGLEIKTDRNIFEKYEFNVENHKLKIRPKKETNFRPTEFMVTANSRNLKKLAAAGSTHVNINSPLQAEEFEAGLAGSGIIQFHDTASFTNLKIEIAGSGDFVGHKVYCEELNGDMAGSNTIVL-GGTVGIAEFSIAGSGTVRAFDCTMDELECKIAGSGDIEAFVVNKIKAEIAGSGSVKYKGDPQIQKKVMGSGKIEKVE. 241
5 -62.0003pet_A mol:protein length:221 Putative adhesin  ali model follow..  24  1.GGEGIQPSKKLITRDYKVKEFNKIDAGTVGNIYYTQSTDGKDLQIYGPDNIVALIQVAVKDNTLFLSIDKSKVRNFKKMKITITSPTLNGISFKGVGDVHIENGLTTD---------------------NLDIESKGVGNVDIQSLTCQKLNVQSMGVGDVKL-EGTAQIAALHSKGVGNIEAGNLRANAVEASSQGVGDITCNATESIDAAVRGVGSIKYKGSPTISLSKKGVGTIKNI.. 221
6 -47.6004ygu_A mol:protein length:184 putative adhesin  ali model follow..  17  1.......GQDAKESEVRKVDAFSSIEITSVGTIHFTQSDTYS-FRIEGREKYVKNTETTVKDGRLLIGFKDKRRNQKDGVTIWISAPDLKEVEFTGVGEFNCEKPLKLD---------------------EVSFEVKGVGEVNVADLTCNVLKVALRGVGSADI-HVVCDYLSAQMGGVGSVTL-SGSAGRADISKGGIGGVNTDNLKIGR................................ 184
7 -6.9802vvf_A mol:protein length:269 MAJOR CAPSID PROTEIN P2  ali model follow..  9  1............MRSFLNLNSIPNVAAGNSCSIKLPIGQTYEVIDLRYSGSQIKNVRVELDGRLLLENTRHKRKIKAGVVSFHFVRPEMKGVNVTDLVQQRMFALGTVGLTTCEI----KFDIDEAAAGPKLSAIAQKSVGTAPSWLTMRRNFFKQLNNGTIHIKAAGVDAVEFQIDGTKWRDLLKILEQYGKAVLDNTYTIDFMLEGDVYQSVLLDQMIQ---DLRLKIDSTMDEQAEIIVE 259
8 -6.8706f0t_A mol:protein length:256 Pizza6-SFW  ali model follow..  13  23....AVDSAGTVYVTDHGNNRVVKLAAGSNTQTVLPFTGLNTPSGVAVDSAGTVYVTDHGNNRVVKLAAGSNTQTVLPWTGLNTP----SGVAVDSAGTVYVTDHGNNRVVKLAAGSNTQTVLPFTGLNTPSGVAVDSAGTVYVTDHGNNRVVKLAAGSNTQTVWTGLNTPSGVAVDSAGTVYVTDHGNNRVVKLAAGSPFTGLNTPSGVAVDSAGTVYVTDHGNNRVVKLAAG......... 256
9 -6.8602zvw_A mol:protein length:275 Proliferating cell nuclear antigen 2  ali model follow..  10  61...........LVSLLLRSEGFEHYRCDRNLSMGMNLGNMSKMLKCAGNDDIIT-IKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIP-DAEYHSIVRMPSGEFSRICKDLSSIGDTVVISVTKEGVKFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMNEPVSLSFALRYMNSFTKATPLSETVTISLSSELPV------VVEYKVAEMGYIRYYLAPKI............... 269
10 -6.7904mxn_A mol:protein length:247 Uncharacterized protein  ali model follow..  12  23.....IKSDGVTLNTRSIQRAVDYISEQGGGRLIFYVGR------LTGSIELKSNVTIRIEGAVLVAVPSVYDFKGVGGCNAIIYADKQKNIGIGGKGIIDGRSIAVRASVEEQLQKGHIEGNVSDYAPALICM--EGCEDVKIEQVDAANVAEIYKDCHNVTVDKVVVNAGASDRKAISISGCDGVKMTDCYFNMAGNPLESAGTSRNLIFT-DGKA......................... 236
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.