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Query: 3lyc_A mol:protein length:241 Putative pectinase, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GGDGNITTENIPVSEYDCLELEGGGMVVNYTQSDAPEGLEIKTDRNIFEKYEFNVENHKLKIRPKKEFRKHTNFRPTEFMVTANSRNLKKLAAAGSTHVNINSPLQAEEFEAGLAGSGIIQFHDTASFTNLKIEIAGSGDFVGHKVYCEELNGDMAGSNTIVLGGTVGIAEFSIAGSGTVRAFDCTMDELECKIAGSGDIEAFVVNKIKAEIAGSGSVKYKGDPQDIQKKVMGSGKIEKVELast
1 -77.8003lyc_A mol:protein length:241 Putative pectinase  ali model  100  1GGDGNITTENIPVSEYDCLELEGGGMVVNYTQSDAPEGLEIKTDRNIFEKYEFNVENHKLKIRPKKEFRKHTNFRPTEFMVTANSRNLKKLAAAGSTHVNINSPLQAEEFEAGLAGSGIIQFHDTASFTNLKIEIAGSGDFVGHKVYCEELNGDMAGSNTIVLGGTVGIAEFSIAGSGTVRAFDCTMDELECKIAGSGDIEAFVVNKIKAEIAGSGSVKYKGDPQDIQKKVMGSGKIEKVE 241
2 -66.3003jx8_A mol:protein length:250 Putative lipoprotein  ali model follow..  36  8DGNGNPETREIKISDYDEITFVGSADFEY-EQSDKAPYLSVTIDENLFDYLVTEVEGGTLKIYPKSIKKGFNNLRPTVYKIKSNSKELKELNTVGSGSFIISKPTKVNRMEINMAGSGNVELRGPVKGYKLECNMAGSGNIIAKDIQLDNLSCSLASSGEIEVIGTVDRASFNVAGSGEIKAFDCQARKAECNIASSGEISVYATQILDANIVGSGEIHYKGDPE-ISKSIMGSGSINKVK 250
3 -65.8004opw_A mol:protein length:241 Uncharacterized protein  ali model follow..  27  6KGNGKLSTKKITIDDFNAIKFDGVIDFNY-EQSESTPHIEITVDENLHPYVNIDIQDRVLTVGFKGA----KVDHFTKFIVKTNSKWLKEVKASGNANFIANSPLKGDELKINANSNCLVQLKQKVEVGKLDLNVSGSANMVVNELKTDKLECSINGSGTINLAGNAEEADYSITTDGEIMAFGVAVPEVNCKITGKGSAQIHPTDNLKATIVGKGNIRYKGPTA-VQQKVIGKGTVEEVK 241
4 -65.3003ljy_A mol:protein length:243 putative adhesin  ali model follow..  27  7KGDGKLTSKKISVADYNEIKVDGVIDFNY-EQSDDPSTVEVTVDQNLHPYVNIEVKDRVLTIAFKGA----KVDHFTKFIVKTNSKWLAAAKVSGNANFMVNSPLTGDETVIKANANSLVQLKETVTVGKLDLNVSGSANMVVNHLEADKIECDIDGSGSITIKGNAKEGDYSIVSSGDIHAFGLAVPQLSCKVTGNGLAEVHATDNLKANVVGKGNIRYKGPTA-VQQRIIGKGTVEEVK 242
5 -64.9003pet_A mol:protein length:221 Putative adhesin  ali model follow..  23  6QPSKKLITRDYKVKEFNKIDAGTVGNIYYTQSTDGKTDLQIYGPDNIVALIQVAVKDNTLFLSIDKSKKVR---NFKKMKITITSPTLNGISFKGVGDVHIENGLTTDNLDIESKGVGNVDIQ---------------------SLTCQKLNVQSMGVGDVKLEGTAQIAALHSKGVGNIEAGNLRANAVEASSQGVGDITCNATESIDAAVRGVGSIKYKGSPTIKSLSKKGVGTIKNI. 221
6 -52.6004ygu_A mol:protein length:184 putative adhesin  ali model follow..  15  1.GQDAKESEVRKVDAFSSIEITSVGTI--HFTQSDTYSFRIEGREKYVKNTETTVKDGRLLIGFKDKKNKSRRNQKDGVTIWISAPDLKEVEFTGVGEFNCEKPLKLDEVSFEVKGVGEVNVA---------------------DLTCNVLKVALRGVGSADIHVVCDYLSAQMGGVGSVTL-SGSAGRADISKGGIGGVNTDNLKIGR................................ 184
7 -7.3803p6j_A mol:protein length:142 de novo designed beta-trefoil architecture with symmetric primary structure  ali model follow..  17  15...........................................................................................................IQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTR----------------RSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVD... 131
8 -6.8605ftx_A mol:protein length:653 SURFACE LAYER PROTEIN  ali model follow..  9  1.....................AEVSELKLTKDNKEVVTLYANGNAFDKDGNQISSGTLTLTAKFKDQYGNELTGKVAGTDYTFESLNPEVLVVAPDGSVTPIV-----------PGTALVKVKYGEVTKTIPVTVKANPVLETIAVDSTGVSVAKGQKATFKVTGNKFTGNVNVTSDK--------TETATVSVSNSGIGQSEYTVTVNGVAEGSTTITIKSGTKEVKVPVN......... 197
9 -6.6903snv_A mol:protein length:143 Symfoil-4T/Permutation #1 synthetic protein  ali model follow..  16  17.........................................................................................RINPDGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTHIQQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTFQISPEGNGEVLLKSTE................................... 137
10 -6.6603p6i_A mol:protein length:142 de novo designed beta-trefoil architecture with symmetric primary structure  ali model follow..  14  6..........................................................................................GNYKKGGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTFQISPEGNGEVLLKSTETGQYLRINPDGTVDG---------------TRDRSDTHIQFQISPEGNGEVLLKS................... 125
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.