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Query: 3m1r_A mol:protein length:322 Formimidoylglutamase, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SNAMDKYPFLREAGSSFKDRDVTKMSDLIATWDGQDIKGPALIGVPLSKSSISHSGASFAPGTIRQALKHSSAYSAELGEHVVSELLYDLGDIDIHVTDIVKSHHHIFQTMHALLSDHPDWVPLILGGDNSISYSTIKAIAQTKGTTAVIQFDAHHDVRNTEDGGPTNGTPFRRLLDEEIIEGQHLIQLGIREFSNSQAYEAYAKKHNVNIHTMDMIREKGLIPTIKEILPVVQDKTDFIFISVDMDVLDQSHAPGCPAIGPGGLYTDELLEAVKYIAQQPNVAGIEIVEVDPTLDFRDMTSRAAAHVLLHALKGMKLSPFKLast
1 -100.0003m1r_A mol:protein length:322 Formimidoylglutamase  ali model  100  1SNAMDKYPFLREAGSSFKDRDVTKMSDLIATWDGQDIKGPALIGVPLSKSSISHSGASFAPGTIRQALKHSSAYSAELGEHVVSELLYDLGDIDIHVTDIVKSHHHIFQTMHALLSDHPDWVPLILGGDNSISYSTIKAIAQTKGTTAVIQFDAHHDVRNTEDGGPTNGTPFRRLLDEEIIEGQHLIQLGIREFSNSQAYEAYAKKHNVNIHTMDMIREKGLIPTIKEILPVVQDKTDFIFISVDMDVLDQSHAPGCPAIGPGGLYTDELLEAVKYIAQQPNVAGIEIVEVDPTLDFRDMTSRAAAHVLLHALKGMKLSPFK 322
2 -87.5003nio_A mol:protein length:319 Guanidinobutyrase  ali model follow..  25  10...........GGNEMPRFGGIATMMRLPQSPAELDALDAAFVGVPLDIGTSLRSGTRFGPREIRAESVMIRPYNMATGAAPFDLNVADIGDVAINTFNLLEAVRIIEQEYDRILGHGI--LPLTLGGDHTITLPILRAIKKKHGKVGLVHVDAHADVNDHMFGKIAHGTTFRRAVEEDLLDCDRVVQIGLRAQGYTAEDFNWSRKQGFRVVQAEECWHKSLEPLMAEVREKVGG--GPVYLSFDIDGIDPAWAPGTGTPEIGGLTTIQAMEIIRGC-QGLDLIGCDLVEVSPPYDTTGNTSLLGANLLYEMLCVLPGVVRR 319
3 -86.6001gq6_A mol:protein length:313 PROCLAVAMINATE AMIDINO HYDROLASE  ali model follow..  26  5...........DSHVSPRYAQIPTFMRLPHD-PQPRGYDVVVIGAPYDGGTSYRPGARFGPQAIRSESGLIHGVGIDRGPGTFDINCVDAGDINLTPFDMNIAIDTAQSHLSGLLKANA--AFLMIGGDHSLTVAALRAVAEQHGPLAVVHLDAHSDTNPAFYGRYHHGTPFRHGIDEKLIDPAAMVQIGIRGHNPKPDSLDYARGHGVRVVTADEFGELGVGGTADLIREKVGQ--RPVYVSVDIDVVDPAFAPGTGTPAPGGLLSREVLALLRCV-GDLKPVGFDVMEVSPLYDHGGITSILATEIGAELLYQYARAHRT 311
4 -85.5003nip_A mol:protein length:326 3-guanidinopropionase  ali model follow..  24  2...SNDHPQPLDAAEIPRFAGIPTFMRLPAF-TDPAALQVGLIGVPWDGGTTNRAGARHGPREVRNLSSLMRKVHHVSRIAPYDVRVGDLGDAPVNPIDLLDSLRRIEGFYRQVHAAGT--LPLSVGGDHLVTLPIFRALGR-ERPLGMVHFDAHSDTNDRYFGPYTHGTPFRRAIEEGLLDPLRTVQIGIRGSVYSPDDDAFARECGIRVIHMEEFVELGVEATLAEARRVVGA--GPTYVSFDVDVLDPAFAPGTGTPEIGGMTSLQAQQLVRGL-RGLDLVGADVVEVSPPFDVGGATALVGATMMFELLCLLAESAAR 316
5 -83.2001wog_A mol:protein length:305 agmatinase  ali model follow..  23  2...........SGPAHLPYGGIPTFARAPLVQPGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCR--VPVFLGGDHSVSYPLLRAFAD-VPDLHVVQLDAHLDFTDTRNDKWSNSSPFRRACEA-LPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLP------RGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHVL. 305
6 -82.8003lhl_A mol:protein length:287 Putative agmatinase  ali model follow..  24  3................................LNYEESNLIVFGVGFDGTTSNRPGARFASSSMRKEFYGLETYSPFLDLDLEDYNICDYGDLEISVGSTEQVLKEIYQETYKIVRDSK--VPFMIGGEHLVTLPAFKAVHEKYNDIYVIHFDAHTDLREEYNNKNSHATVIKRIWD--IVGDNKIFQFGIRSG--TKEEFKFATEEKHTYMEIGGI------DTFENIVNMLNG--KNIYLTIDLDVLDASVFPGTGTPEPGGVNYREFQEIFKIIKSNINIVGCDIVELSPDYDTTGVSTVIACKILRELCLIISDKIKE 280
7 -82.0004dz4_A mol:protein length:324 Agmatinase  ali model follow..  24  11GDGAIRRPSVYGSSIENTYAGVLSFMRRNYT-RDLDGVDVVVSGVPLDLATTFRSGARLGPSAVRAASVQLAELNPYPWGFFDDLAVIDYGDCWFDAHHPLSIKPAIVEHARTILQSDA--RMLTLGGDHYITYPLLIAHAQKYGPLSLIHFDAHCDTWADDAPSLNHGTMFYKAVKDGLIDPKASVQVGIRTWND--------DYLGINVLDAAWVHEHGARATLERIESIVGG--RPAYLTFDIDCLDPAFAPGTGTPVAGGLSSAQALAIVRGL-GGVNLIGADVVEVAPAYDQSEITAIAAAHVACDLLCLWRQRKAG 322
8 -79.8002a0m_A mol:protein length:316 ARGINASE SUPERFAMILY PROTEIN  ali model follow..  22  5.................ARTDDPRLLSLFSA-QREEDADIVIIGFPYDEGCGGRAGAKKGPAAFRFFLQRLGSVNNLELVDASHLKLYDAGDITA--STLEEAHEKLESKVFTVLARGA--FPFVIGGGNDQSAPNGRAMLRAFGDVGVINVDSHLDVRPPLQDGVHSGTPFRQLLEESSFSGKRFVEFACQGSQCGALHAQYVRDHQGHLMWLSEVRKKGAVAALEDAFGLTG---KNTFFSFDVDSLKSSDMPGVSCPAAVGLSAQEAFDMCFLAGKTPTVMMMDMSELNPLVE-EYRSPRVAVYMFYHFVLGFATRPKP 306
9 -78.6003pzl_A mol:protein length:313 Agmatine ureohydrolase  ali model follow..  23  1......MSLGGNGREKDHASELRSIFSLKKAVNGYEEAKYVVFGIPFDNTSSYRRGSKYAPDSIRGAYVNLESYEYSYGIDLLASGMADLGDMEES-EDVEYVIDTVESVVSAVMSDGK--IPIMLGGEHSITVGAVRALPK---DVDLVIVDAHSDFRSSYMGKYNHACVTRRALD--LLGEGRITSIGIRSV--SREEFEDPDFRKVSFISSFDVKKNGIDKYIEEVDR----KSRRVYISVDMDGIDPAYAPAVGTPEPFGLADTDVRRLIERLSY--KAVGFDIVEFSPLYD-NGNTSMLAAKLLQVFIASREKYYKE 303
10 -71.1001pq3_A mol:protein length:306 Arginase II, mitochondrial precursor  ali model follow..  20  2......................................SVAVIGAPFSQG-QKRKGVEHGPAAIREAGLMKRLSSLGCHLKDFGPKDDLYNNLIVNPRSVGLANQELAEVVSRAVSDGY--SCVTLGGDHSLAIGTISGHARHCPDLCVVWVDAHADINTPLTTGNLHGQPVSFLLRELCISSASIVYIGLRDV--DPPEHFILKNYDIQYFSMRDIDRLGIQKVMERTFDLLGKRQRPIHLSFDIDAFDPTLAPATGTPVVGGLTYREGMYIAEEIHNTGLLSALDLVEVNPQLATSEEEAKTTANLAVDVIASSFGQTRE 305
11 -70.5001wva_A mol:protein length:322 Arginase 1  ali model follow..  21  2.................................SAKSRTIGIIGAPFSKG-QPRGGVEEGPTVLRKAGLLEKLKEQECDVPFADIPNDSPFQIVKNPRSVGKASEQLAGKVAEVKKNGR--ISLVLGGDHSLAIGSISGHARVHPDLGVIWVDAHTDINTPLTTGNLHGQPVSFLLKELCISAKDIVYIGLRDV--DPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLGRKKRPIHLSFDVDGLDPSFTPATGTPVVGGLTYREGLYITEEIYKTGLLSGLDIMEVNPSLGKTPEEVTRTVNTAVAITLACFGLARE 309
12 -70.3004rhm_A mol:protein length:351 Arginase  ali model follow..  21  2...............GSSSSGLVPRGSHM--------FSKFLMNVKGVTPRGSDWANRLGPVALFGYGAGMPRRAPLLDFFYAELTIHDKGPIECPPETSDEWYLGSLEASTELLEKGY--VPVSVGGDGSATLSMVEAYKRLFDDIVIVHFDAHPDVSD-------PRSPLRVLLDKGLLK--GVVSVGNRQV--SSEDRKVRKLHKMFYMDMHAIYSKGLFCIRDIR------NDYPVFISIDADVLDPAFAPAVDSPVAGGLSTRDLLHIMNGI-RGPKVVGIDVYGYNPDLDVVGLTAIALSKIIKEGILKAYSISTH 319
13 -70.0001xfk_A mol:protein length:336 Formimidoylglutamase  ali model follow..  24  39.................................ANQEPGVALIGFECDAGVKGRTGAKHAPSLIKQALANLAWHH--------PIPIYDLGNIRCEGDELEQAQQECAQVIQQALPHA---RAIVLGGGHEIAWATFQGLAQHFPRIGIINFDAHFDLRTFESERPSSGTPFNQIHHFCQQQDFHYACLGVSRASNTPALFERADKLGVWYVEDKAFSPLSLKDHLTQLQHFIDD-CDYLYLTIDLDVFPAASAPGVSAPAARGVSLEALAPYFDRILHKNKLMIADIAEYNPSFDIDQHTARLAARLCWDIANAMAEQVQS 332
14 -69.9001d3v_A mol:protein length:323 PROTEIN (ARGINASE)  ali model follow..  20  2.................................SSKPKPIEIIGAPFSKG-QPRGGVEKGPAALRKAGLVEKLKETEYNVRDHDLAFVDVPNDSPNPRSVGKANEQLAAVVAETQKNGT--ISVVLGGDHSMAIGSISGHARVHPDLCVIWVDAHTDINTPLTTGNLHGQPVAFLLKELCISAKDIVYIGLRDV--DPGEHYIIKTLGIKYFSMTEVDKLGIGKVMEETFSYLGRKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREGLYITEEIYKTGLLSGLDIMEVNPTLGKTPEEVTRTVNTAVALTLSCFGTKRE 309
15 -68.9002eiv_A mol:protein length:291 Arginase  ali model follow..  23  3......................................RVAVVGVPMDLGAN-RRGVDMGPSALRYARLLEQLEDLGYT-------VEDLGDVPVSLARASRRRGRGLAYLEEIRAAPEGVFPIVLGGDHSLSMGSVAGAAR-GRRVGVVWVDAHADFNTPEPSGNVHGMPLAVLSGLGAVDPKDVVLVGVRSL--DPGEKRLLKEAGVRVYTMHEVDRLGVARIAEEVLKHLQG--LPLHVSLDADVLDPTLAPGVGTPVPGGLTYREAHLLMEILAESGRVQSLDLVEVNPILDERNRTAEMLVGLALSLLGKRIF.... 291
16 -68.8001t5f_A mol:protein length:314 Arginase 1  ali model follow..  20  2......................................PIEIIGAPFSKGCP-RGGVEKGPAALRKAGLVEKLKETEYNVRDHDLAFVDVPNDSPNPRSVGKANEQLAAVVAETQKNGT--ISVVLGGDHSMAIGSISGHARVHPDLAVIWVDAHTDINTPLTTSSGAGQPVAFLLKELAISAKDIVYIGLRDV--DPGEHYIIKTLGIKYFSMTEVDKLGIGKVMEETFSYLLGKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREGLYITEEIYKTGLLSGLDIMEVNPTLGKTPEEVTRTVNTAVALTLSAFGTKRE 304
17 -67.9001cev_A mol:protein length:299 PROTEIN (ARGINASE)  ali model follow..  25  3......................................PISIIGVPMDLGQT-RRGVDMGPSAMRYAGVIERLERLHYDIEGKAERLHEQGDSRLRNKAVAEANEKLAAAVDQVVQRGR--FPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSGNIHGMPLAASLGFGKIKPEHVVLIGVRSL--DEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM.... 299
18 -67.5005ynl_A mol:protein length:362 Arginase  ali model follow..  19  28.................PDLGTDDDDKMSTSPFLATPRTAGIVGCPFSGG-QPKAGVHSGPLQLIESGLLNDIENLGWTVDLAVSIVSDTPDPDIGRLKQPRLVSRVTKDVADRVYASKGQLTVTLGGDHSLAMGTVSGTFKAYPEACLIWVDAHADINTPHTTGRLHGCPVSFLLGLDCLKPERIVYIGLRDI--DAGERKILKDNNIKCFSMFHVDKYGIGKVVEMALDHVNDRTRPIHLSFDVDALDPSVAPSTGTAVRGGLTFREGHYICEAIAETNLLVSLDIMEINPSLGALAQTVDVGRSLVRCALG........ 352
19 -67.3004rhi_A mol:protein length:351 Arginase  ali model follow..  19  2...............GSSSSGLVPRGSHMFS----KFLMNVKGVTPRG----SDWANRLGPVALFGYGAGMPRRAPLLDFFYAELTIHDKGPIECPPETVDEWYLGSLEASTELLEKGY--VPVSVGGDGSATLSMVEAYKRLFDDIVIVHFSARPSVSD-------PRSPLRVLLDKGLLK--GVVSVGNRQV--SSEDRKVRKLHKMFYMDMHAIYSKGLFCIRDIR------NDYPVFISIDASVLDPAFAPAVDSPVAGGLSTRDLLHIMNGI-RGPKVVGIDVYGYNPDLDVVGLTAIALSKIIKEGILKAYSISTH 319
20 -66.3006dkt_A mol:protein length:296 Arginase  ali model follow..  25  2....................................DKTISVIGMPMDLGQA-RRGVDMGPSAIRYAHLIERLSDMGYT-------VEDLGDIPINRNSVLAGNEKLAQKVNKVIEEKK--FPLVLGGDHSIAIGTLAGTAKHYDNLGVIWYDAHGDLNTLETSGNIHGMPLAVSLGIGKIKPENVVIIGARSL--DEGERKYIKESGMKVYTMHEIDRLGMTKVIEETLDYL-SACDGVHLSLDLDGLDPNDAPGVGTPVVGGISYRESHLAMEMLYDAGIITSAEFVEVNPILDHKNKTGKTAVELVESLLGKKLL.... 296
21 -64.6004ity_A mol:protein length:330 Arginase  ali model follow..  19  3................................GSGMAKKMSIVLAPFSGGQP-HSGVELGPDYLLKQGLQQDMEKLGWDTRVEARKASDNGDRIGRVKRTAECTEKIYKCVRRVAEQGR--FPLTIGGDHSIALGTVAGVLSVHPDAGVIWVDAHADINTMSGTGNLHGCPLSILLGLDVLKPNKIAYIGLRAV--DDEEKKILHDLNIAAFSMHHVDRYGIDKVVSMAIEAVSKGTEPVMVSYDVDTIDPLYVPATGTPVRGGLSFREALFLCERIAECGRLVALDVVECNPLLAATESHVNDTISVGCAIARCMMGETLL 315
22 -62.9004g3h_A mol:protein length:330 Arginase (RocF)  ali model follow..  16  1.......................................MILVGLEAELGAS-KRGTDKGVRRLREALSATHGDVIKGMQTITCVLYKEFRYAKNFEDYYLFCKENLIPCMKEVFEKKE--FPLILSSEHANMFGIFQAFRSVHKKIGILYLDAHADIHTAYDSKHIHGMPLGMVLNRVEIDPKCLVYFGVRST--EQSERDVIRELQIPLFSVDAIRE-NMQEVVQKTKESL-KAVDIIYLSLDLDIMDGKLFTSTGVRENNGLSFDELKQLLGLLLESDRLKAVEVTEYNPTVSIKHNNEKQVLEILDLIINSCKIKDKK 315
23 -62.2004q3p_A mol:protein length:385 Arginase  ali model follow..  20  23.......................PYYPIQDEKPKLLYTSANFLGIPTNRG-QPKIGTYQGPELIRKSNFFQLVAEDGIQLDCGDIIPVELNEAEDPQERVEELMKQSNKHTVELSGSKS-TPLVIVGGDHSMATGTILGHAEAKPDLCVLWIDAHGDINTPLNSGNMHGMPLSFLVKELCLNASNIAYIGLRDL--DAHETHDIRKHGIAYFTMLDVDRMGIEAVIKEALLAVNPREKAIHLSFDIDALDPLVAPSTGTAVPGGLTLREGLRICEEVSATGKLSVVELAELNPLLGSQEKTQSSAVHILRACLGHCRSGHLP 357
24 -58.8003mmr_A mol:protein length:413 Arginase  ali model follow..  21  79................................NNYINNNDNNNDNNNDNNNDNNNNCYIPNGVIKEKKHDLSNNKMNGYVNYEENNVISTNDKYKNNKEIGIFSKNLFDTMSNELRKKN--FVLNIGGDHGVAFSSILSSLQMYQNLRVIWIDAHGDINIPETSGNYHGMTLAHTLNLTYLKPENTAIIGIRDI--DAYEKIILKKCNINYYTIFDIEKNGIYNTICTALEKIDPSNCPIHISLDIDSVDNVFAPGTGTVAKGGLNYREINLLMKILAETKRVVSMDLVEYNPSLDEVDKKVHGDSLPILDNATKTGKLCLE 396
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Liu T, Rojas A, Ye Y, Godzik A. Homology modeling provides insights into the binding mode of the PAAD/DAPIN/pyrin domain, a fourth member of the CARD/DD/DED domain family. Protein Sci. 2003 Sep;12(9):1872-81.