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Query: 3oe3_A mol:protein length:98 Putative periplasmic protein, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ASQEISKSIYTCNDNQVMEVIYVNTEAGNAYAIISQVNEMIPMRLMKMASGANYEAIDKNYTYKLYTKGKTAELVEGDDKPVLSNCSLANLELast
1 -54.5003oe3_A mol:protein length:98 Putative periplasmic protein  ali model  100  1ASQEISKSIYTCNDNQVMEVIYVNTEAGNAYAIISQVNEMIPMRLMKMASGANYEAIDKNYTYKLYTKGKTAELVEGDDKPVLSNCSLANLE 92
2 -43.0003f6z_B mol:protein length:101 Putative uncharacterized protein  ali model follow..  22  14AKLDTRSVDYKCENGRKFTVQYLNKGDNSLAVVPVSDNSTLVFSNVISASGAKYA----AGQYIWWTKGEEATLYGGGEPTDGVACKER... 101
3 -36.0004mir_A mol:protein length:99 Putative uncharacterized protein  ali model follow..  23  14VKVSTNSILYKCG-AKDLSVTYYNAG-DISLAKLELEDETVVASNVISGSGAKYA----GSVYIWWTKGKTASLYNNPEEDKPISCVEQ... 99
4 -35.3002f09_A mol:protein length:102 Hypothetical protein ydhA  ali model follow..  25  13SHMQTDTLEYQCDEK-PLTVKLNN---PRQEVSFVYDNQLLHLKQGISASGARYT----DGIYVFWSKGDEATVYK-RDRIVLNNCQLQNPQ 95
5 -33.7005my7_A mol:protein length:124 Adhesin  ali model follow..  19  27PTVAKKTVSYVCQQGKKVKVTYGFNKQGTTYASAVINGKRVQMPVNLDKSDNVETFYGKEGGYVLGTGVQPIMITAPDNQIVFKDCSPR... 124
6 -21.6006gq4_A mol:protein length:111 Adhesin  ali model follow..  19  6PTVAKKTVSYVCQQGKKVKVTYFNKQGLTTYASAVINGKRVQMPINLDKSDNMDTFYGKEGGYVLSTRKQPIMITAPDNQIVFKDCSPR... 103
7 -8.4801xiw_A mol:protein length:105 T-cell surface glycoprotein CD3 epsilon chain  ali model follow..  14  17VSISGTTVILTCPQYPGSEILWQHNDDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRG------SKPEDANFYLYLRARVCENCMEMD.. 105
8 -7.2005wb2_A mol:protein length:460 Envelope protein US28, nanobody 7 fusion protein  ali model follow..  3  404......................ISRDNAKNAVYLQMNSLK------PEDTAVYYCNAEEVEEADYWGQGTQVTVSSRALEVLF......... 460
9 -7.0203kho_B mol:protein length:133 B-cell antigen receptor complex-associated protein beta chain  ali model follow..  9  28AKKRSSMVKFHCYTNHSGALTWFRKRGSQQPQELVSEEGTLTIQNIQYEDNGIYQKCDSANHNVTDSCGTELLVLGFSTLDQLKR....... 126
10 -6.8502m6o_A mol:protein length:48 Uncharacterized protein  ali model follow..  6  1.....QAVEYACEKGHRFEMPFSVEAEIPPEWECKVCGAQALLVDGDGPEEKK....................................... 48
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.