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Query: 3omt_A mol:protein length:73 uncharacterized protein, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70
# Score Template Links and tools%idFirst SNAMTERKIFNRLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNVDVRELIVSTKRLast
1 -44.7003omt_A mol:protein length:73 uncharacterized protein  ali model  100  1SNAMTERKIFNRLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNVDVRELIVSTKR 73
2 -40.6003bs3_A mol:protein length:76 Putative DNA-binding protein  ali model follow..  46  5..SNNQQMMLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNVDPRQLINGKIK 75
3 -38.3001adr_A mol:protein length:76 P22 C2 REPRESSOR  ali model follow..  15  1...MNTQLMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLKGDLS 70
4 -35.9002k9q_A mol:protein length:77 uncharacterized protein  ali model follow..  13  1......MELSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKGVDLNALFDRIIV 67
5 -34.7003mlf_A mol:protein length:111 transcriptional regulator  ali model follow..  15  10ENLYFQSNAMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDDIFLGNEY 82
6 -34.2002xiu_A mol:protein length:66 CYLR2  ali model follow..  24  2........IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNCPLEDIFQWQPE 66
7 -34.1001utx_A mol:protein length:66 CYLR2  ali model follow..  24  2........IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQWQPE 66
8 -33.3002kpj_A mol:protein length:94 SOS-response transcriptional repressor, LexA  ali model follow..  20  2VKDKQKAIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNINKSDLIEDKKL 74
9 -33.3003zhi_A mol:protein length:83 CI  ali model follow..  22  1...MLKTDTSNRLKQIMAERNLKQVDILNLIKLSKSTLSAYVASVQSPDQNRIYLLAKTLGVSEAWLMGRS.. 77
10 -33.2003op9_A mol:protein length:114 Pli0006 protein  ali model follow..  19  2NAMTIQHQFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSIDELVGYVQE 74
11 -32.7001x57_A mol:protein length:91 Endothelial differentiation-related factor 1  ali model follow..  13  11.....TLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKP. 77
12 -31.9005a7l_A mol:protein length:80 CI  ali model follow..  21  2.....QTDTSNRLKQIMAERNLKQVDILNLIKLSKSTLSQYVNSVQSPDQNRIYLLAKTLGVSEAWLMGFD.. 76
13 -31.7002mez_A mol:protein length:106 Multiprotein Bridging Factor (MBP-like)  ali model follow..  10  9......TDYYKIIKTAREQLGISQQQLAQKLKVSENIVKRFESGKLKPTISQARQLEKILGIKLVTPLENNEE 75
14 -31.7005j2y_A mol:protein length:80 Regulatory protein  ali model follow..  9  4HERTQPQNMAFRAKATRTARRESQETFWSRFGISQSCGSRFENGENLPFIYLLLHFYIEGQITDRQLADLRGK 77
15 -31.5003zhm_A mol:protein length:79 CI  ali model follow..  21  1.....KTDTSNRLKQIMAERNLKQVDILNLIKLSKSTLSQYVNSVQSPDQNRIYLLAKTLGVSEAWLMGRS.. 75
16 -30.6003lfp_A mol:protein length:98 Csp231I C protein  ali model follow..  16  2........LIRRLKDARLRAGISQEKLGVLAGIDEASMNQYEKGKHAPDFEMANRLAKVLKIPVSYLYTPEDD 70
17 -30.5004z5h_A mol:protein length:72 Antitoxin HipB  ali model follow..  22  9......TQLANAMKLVRQQNGWTQAELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDA.... 71
18 -30.2002wiu_B mol:protein length:88 HTH-TYPE TRANSCRIPTIONAL REGULATOR HIPB  ali model follow..  20  11......TQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDAKNAS 77
19 -30.2001per_L mol:protein length:69 PROTEIN (434 REPRESSOR)  ali model follow..  21  1.......SISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKT-KRPRFLPELASALGVSVDWLLNGTSD 65
20 -30.0002jvl_A mol:protein length:107 TrMBF1  ali model follow..  17  32.....GKEVGKAIEQGRQEPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLNVKLRGANIGAPR 101
21 -29.9004o8b_A mol:protein length:122 Uncharacterized protein  ali model follow..  16  2........LGTRLKAARIRAGYSQKQLGMLVGMDEFSMNQYERERHSPNMRTSEQLAMVLQVPMAYLYCPEDE 70
22 -29.5002r63_A mol:protein length:63 REPRESSOR PROTEIN FROM BACTERIOPHAGE 434  ali model follow..  22  1.......SISSRVKSKMIQLGLNQAELAQKVGTTQQSIEQLENGKT-KRPRFLPELASALGVSVDWLLNGT.. 63
23 -29.5005k98_B mol:protein length:91 Antitoxin HipB  ali model follow..  20  14......TQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDTKNAS 80
24 -29.4001sq8_A mol:protein length:64 dh434  ali model follow..  15  1......MLMGERIRARRIQLGLNQAELAQKVGVDQQAIEQLENGKA-KRPRFLPELARALGVAVDWLLNGA.. 64
25 -29.3001zug_A mol:protein length:71 PHAGE 434 CRO PROTEIN  ali model follow..  25  1.....MQTLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVT-KRPRFLFEIAMALNCDPVWLQYGTKR 67
26 -29.3002l49_A mol:protein length:99 C protein  ali model follow..  11  2.....SNTISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRSTPPTDVMMNILQTPQFTKYTLWFMTNQ 69
27 -29.0003ivp_A mol:protein length:126 Putative transposon-related DNA-binding protein  ali model follow..  19  5EDKYDFRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLPASS 77
28 -28.7002p5t_A mol:protein length:158 Putative transcriptional regulator PezA  ali model follow..  18  2........IGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDIVGEDK. 65
29 -28.1001b0n_A mol:protein length:111 PROTEIN (SINR PROTEIN)  ali model follow..  27  2........IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNQTNPSIQFLEKVSAVLDVSVHTLLDEKHE 67
30 -27.8001rio_A mol:protein length:98 Repressor protein CI  ali model follow..  14  15....DARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFS..... 78
31 -27.7003kz3_A mol:protein length:80 Repressor protein CI  ali model follow..  13  5EQLEDARRLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVSVEEFS..... 72
32 -26.9002ef8_A mol:protein length:84 Putative transcription factor  ali model follow..  15  7....RYRCLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVASRLGLPMD.... 71
33 -26.6002ewt_A mol:protein length:71 putative DNA-binding protein  ali model follow..  17  6.....AKQLGAKLRAIRTQQGLSLHGVEEKSQWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQELL..... 70
34 -26.6002b5a_A mol:protein length:77 C.BclI  ali model follow..  22  8.....KRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFRKMEE 75
35 -26.6001y7y_A mol:protein length:74 C.AhdI  ali model follow..  24  12......VKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRELF..... 73
36 -26.4003qq6_A mol:protein length:78 HTH-type transcriptional regulator sinR  ali model follow..  26  1....GSSMIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNQTNPSIQFLEKVSAVLDVSVHTLLDEKHE 70
37 -26.4004ghj_A mol:protein length:101 Probable transcriptional regulator  ali model follow..  19  29......EEIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAEKGKVQLDIMIAILMALDLTEQIDLFIPKQE. 94
38 -26.2005uk3_A mol:protein length:176 Uncharacterized protein  ali model follow..  15  12SANYARQIMSNQFIKAKESKGLTYQQMAQLLSVNKVWLTSVLHGQNCCDIQLAHRICDTLGISHEYANELTSI 84
39 -26.2004ia8_A mol:protein length:82 Regulatory protein  ali model follow..  20  10......SKVSFVIKKIRLEKGMTQEDLAYKSNLDRTAISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIK 76
40 -25.8004i6u_A mol:protein length:82 Regulatory protein  ali model follow..  20  10......SKVSFVIKKIRLEKGMTQEDLAYKSNLDRTFISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIK 76
41 -25.8003f6w_A mol:protein length:83 XRE-family like protein  ali model follow..  16  13......QALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIGTDPYALLSKLEA 79
42 -25.7001lli_A mol:protein length:92 PROTEIN (LAMBDA REPRESSOR)  ali model follow..  14  11.QLEDARRLKAIYEKKKNELGLSQESLADKLGMGQSGIGALFNGINALNAYNAALLAKILKVSVEEFS..... 77
43 -25.7004i6t_A mol:protein length:82 Regulatory protein  ali model follow..  19  10......SKVSFVIKKIRLEKGMTQEDLAYKSNLDRAYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIK 76
44 -25.7004f8d_A mol:protein length:82 Regulatory protein  ali model follow..  20  10......SKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSANLTIKSLELIMKGLEVSDVVFFEMLIK 76
45 -25.6004fn3_A mol:protein length:82 Regulatory protein  ali model follow..  20  10......SKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKALELIMKGLEVSDVVFFEMLIK 76
46 -24.9003g5g_A mol:protein length:99 Regulatory protein  ali model follow..  20  21......SKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIK 87
47 -24.6003fya_A mol:protein length:99 Regulatory protein  ali model follow..  20  21......SKVSFVIKKIRLEKGMTQEDLAYKSNLDATYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIK 87
48 -24.4003vk0_A mol:protein length:114 Transcriptional regulator  ali model follow..  17  19.....RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQLLLPPQE 86
49 -24.2003b7h_A mol:protein length:78 Prophage Lp1 protein 11  ali model follow..  13  5.....GEFVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSKPTITTIRKVCGTLGISVHDFFDFPP. 72
50 -24.1005woq_A mol:protein length:120 Transcriptional regulator ClgR  ali model follow..  17  3MTALLREVIGDVLRNARTDQGRTLREVSDAARVSLGYLSEVERGRKEASSELLSAICDALDVPLSRVLTDAGE 75
51 -24.0003kxa_A mol:protein length:141 Putative uncharacterized protein  ali model follow..  17  55ADKIALKAGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEVRAAFER 127
52 -23.9003f51_A mol:protein length:117 Clp gene regulator (ClgR)  ali model follow..  22  26.....REALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVADVLIEAAG 93
53 -23.9004y42_A mol:protein length:156 Cyanate hydratase  ali model follow..  9  7.YSSPRETLTDTIMMAKIRKNLTFEAINQGTGLSLAFVTAALLGQHPLPEQAARVVAEKLDLDEDAIRLLQT. 77
54 -23.7001zz6_A mol:protein length:198 Hydroxypropylphosphonic Acid Epoxidase  ali model follow..  17  3NTKTASTGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGETLTQLGRIAHVLGTSIGALTPPAGN 76
55 -23.6001dw9_A mol:protein length:156 CYANATE LYASE  ali model follow..  8  7.NRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSIL..... 73
56 -23.5002qfc_A mol:protein length:293 PlcR protein  ali model follow..  23  1...MQAEKLGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYEVLIY 69
57 -23.1006b9s_A mol:protein length:457 Methylphosphonate synthase  ali model follow..  20  235DFTNHENASLSLLEYYFELSNLTKEKFAKRTNFSMETLADFFTKKKLPTFDELKIIAKALNVNSRDLMPNDLT 307
58 -22.8006b9r_A mol:protein length:450 Hydroxyethylphosphonate dioxygenase  ali model follow..  29  232..ALTPGDHGAMLRSVMAARLTTVTELADRSGLKTDRVAALCRTPARAEWPELSALAEALGVSVRELLVPHTT 302
59 -22.7001y9q_A mol:protein length:192 transcriptional regulator, HTH_3 family  ali model follow..  17  4TDVMFKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFANDPQ 76
60 -22.7005fd4_A mol:protein length:324 ComR  ali model follow..  14  20...MNDKEFGQRVRQLRESASMTREQFCDELELSVRQLTRIEAGASKPTFSKIQYIATRLGMGLYELMPDYVS 90
61 -22.5004pu3_D mol:protein length:118 Toxin-antitoxin system antidote transcriptional repressor Xre family  ali model follow..  13  36ASPLNQQSLGLLIKERRKSAALTQDVAAMLCGVTKKTLIRVEKGED-VYISTVFKILDGLGIDIVSAQTSDTE 107
62 -22.4002ofy_A mol:protein length:86 Putative XRE-family transcriptional regulator  ali model follow..  14  15......QRLGELLRSAR--GDMSMVTVAFDAGISVETLRKIETGRATPAFFTIAAVARVLDLSLDDVAA.... 76
63 -22.2003eus_A mol:protein length:86 DNA-binding protein  ali model follow..  22  11....EHVYLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACEGL.......... 69
64 -22.2002mqk_A mol:protein length:65 ATP-dependent target DNA activator B  ali model follow..  12  3...MNISDIRAGLRTLVENEETTFKQIALESGLSTGTISSFINDKYNGDNERVSQTLQRW............. 59
65 -21.1003rzz_A mol:protein length:446 Hydroxyethylphoshphonate Dioxygenase (PhpD)  ali model follow..  15  3....HMRIDPFKLAHWMNARKYTAAQTADLAGLPLDDLRRLLGDENEPDPAAATALAEALSVEPSQLAADAHR 72
66 -20.4005jub_A mol:protein length:310 Transcriptional regulator  ali model follow..  20  1...MNKDSIGLRIKTERERQQMSREVLCLDGELTVRQLIRIEKGESLPSLDRLSYIAKRLGKSMTELLDQDN. 71
67 -20.4003bdn_A mol:protein length:236 Lambda Repressor  ali model follow..  15  10EQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSIAR 82
68 -19.4004yv6_A mol:protein length:284 Transcriptional regulator  ali model follow..  16  2.....DKELGKTLRRLRQGKQVSISSLADEH-LSKSQISRFERGESEISCSRLLNLLDKLNITIDEFV..... 63
69 -19.0002aw6_A mol:protein length:317 PrgX  ali model follow..  24  1.....MFKIGSVLKQIRQELNYHQIDLYSGI-MSKSVYIKVEADSRPISVEELSKFSERLGVNFFEIL..... 62
70 -18.8001s4k_A mol:protein length:120 putative cytoplasmic protein ydil  ali model follow..  17  1.....AMMNALELQALRRIFDMTIEECTIYITNNSATWQRWEAGDIPISPEIIARLKEMKARRQRRI...... 64
71 -18.8005v5t_A mol:protein length:306 Conserved domain protein  ali model follow..  13  2KEYMEYRPLGEEIERIRKGKNIPLRVFDE--GVSSRSYQRFVQGNSELRISDLAIIVEILSISPMEMT..... 68
72 -18.6003fmy_A mol:protein length:73 HTH-type transcriptional regulator MQSA (ygiT/b3021)  ali model follow..  14  14..........EFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAQPHTIKLLRVLDKHPELLNEI...... 72
73 -18.5004ryk_A mol:protein length:306 Lmo0325 protein  ali model follow..  11  1.....MGSYGELIREIRLSKGLTQKEVYTGI-ISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDEFF..... 62
74 -18.5002fjr_A mol:protein length:189 Repressor protein CI  ali model follow..  11  2SLGWSNVDVLDRICEAYGFS--QKIQLANHFDIASSSLSNRYTRGAIS-YDFAAHCALETGANLQWLLTGEGE 71
75 -18.2005j9i_A mol:protein length:104 Antitoxin igA-2  ali model follow..  11  43..........DEIVSIREQFNMSRGVFARLLHTSSRTLENWEQGRSVPNAVTLLKLVQRHPETLSHIAE.... 103
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24