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Query: 3op9_A mol:protein length:114 Pli0006 protein, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110
# Score Template Links and tools%idFirst SNAMTIQHQFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSIDELVGYVQEDKVWNDLSLKQWLLSLNLRSEEEIAKIKILVDTVETLYPNLast
1 -55.9003op9_A mol:protein length:114 Pli0006 protein  ali model  100  1SNAMTIQHQFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSIDELVGYVQEDKVWNDLSLKQWLLSLNLRSEEEIAKIKILVDTVETLYPN 114
2 -41.0003mlf_A mol:protein length:111 transcriptional regulator  ali model follow..  16  9TENLYFQSNAMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDDIFLGNEYENFVFTNDKKK............................. 93
3 -40.3002p5t_A mol:protein length:158 Putative transcriptional regulator PezA  ali model follow..  17  2.........IGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDIVGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYRYQD........ 98
4 -37.2004o8b_A mol:protein length:122 Uncharacterized protein  ali model follow..  12  2.........LGTRLKAARIRAGYSQKQLGMLVGMDEFSMNQYERERHSPNMRTSEQLAMVLQVPMAYLYCPEDE--------LAELILKVSSLTPEFKKELTRFIEQLLAAQGS 102
5 -37.2002kpj_A mol:protein length:94 SOS-response transcriptional repressor, LexA  ali model follow..  22  6.....QKAIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNINKSDLIEDKKLNI...................................... 76
6 -36.8002l49_A mol:protein length:99 C protein  ali model follow..  19  1.....MSNTISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRSTPPTDVMMNILQTPQFTKYTLWFMTNQIA...................................... 71
7 -35.4003lfp_A mol:protein length:98 Csp231I C protein  ali model follow..  19  2.........LIRRLKDARLRAGISQEKLGVLAGIDEASMNQYEKGKHAPDFEMANRLAKVLKIPVSYLYTPEDD--------LAQIILTWNELNEQERKRINFYIRKKAK.... 98
8 -35.1001adr_A mol:protein length:76 P22 C2 REPRESSOR  ali model follow..  16  1....MNTQLMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLKGDLSQT...................................... 72
9 -34.8001b0n_A mol:protein length:111 PROTEIN (SINR PROTEIN)  ali model follow..  13  2.........IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEVRDAMTSGVSKKQFREFLDYQKWRKSQKEE 111
10 -34.3003bs3_A mol:protein length:76 Putative DNA-binding protein  ali model follow..  15  6....NNQQMMLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNVDPRQLINGKIK........................................ 75
11 -33.6005k98_B mol:protein length:91 Antitoxin HipB  ali model follow..  9  8.QKIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDTKNASPESTEQQDLE.............................. 90
12 -33.5003ivp_A mol:protein length:126 Putative transposon-related DNA-binding protein  ali model follow..  12  11.......RALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLPASSQV--KSTKRRQLENKIDNFTDADLVIMESVADGIVKSKEV 115
13 -33.5002wiu_B mol:protein length:88 HTH-TYPE TRANSCRIPTIONAL REGULATOR HIPB  ali model follow..  9  5.QKIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDAKNASPESTEQQNLE.............................. 87
14 -33.4005a7l_A mol:protein length:80 CI  ali model follow..  23  1.....MQTDTSNRLKQIMAERNLKQVDILNLIKLSKSTLSQYVNSVQSPDQNRIYLLAKTLGVSEAWLMGFDVP........................................ 78
15 -33.3003zhi_A mol:protein length:83 CI  ali model follow..  22  1....MLKTDTSNRLKQIMAERNLKQVDILNLIKLSKSTLSAYVASVQSPDQNRIYLLAKTLGVSEAWLMGRS.......................................... 77
16 -33.2003omt_A mol:protein length:73 uncharacterized protein  ali model follow..  19  1.SNAMTERKIFNRLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNVDVRELIVSTKR........................................ 73
17 -33.1001x57_A mol:protein length:91 Endothelial differentiation-related factor 1  ali model follow..  17  10.....VTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKD............................................. 73
18 -32.6003zhm_A mol:protein length:79 CI  ali model follow..  22  1......KTDTSNRLKQIMAERNLKQVDILNLIKLSKSTLSQYVNSVQSPDQNRIYLLAKTLGVSEAWLMGRS.......................................... 75
19 -32.3002mez_A mol:protein length:106 Multiprotein Bridging Factor (MBP-like)  ali model follow..  16  2NAELEIVTDYYKIIKTAREQLGISQQQLAQKLKVSENIVKRFESGKLKPTISQARQLEKILGIKLVTPLENNEESEKEFDDTGLTLGDVVNIKEGKKLE............... 100
20 -32.3002k9q_A mol:protein length:77 uncharacterized protein  ali model follow..  15  1.......MELSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKGVDLNALFDRIIVNK...................................... 69
21 -31.8001utx_A mol:protein length:66 CYLR2  ali model follow..  16  2.........IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQWQPE........................................ 66
22 -31.8002xiu_A mol:protein length:66 CYLR2  ali model follow..  16  2.........IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNCPLEDIFQWQPE........................................ 66
23 -31.8005j2y_A mol:protein length:80 Regulatory protein  ali model follow..  10  9......PQNMAFRAKATRTARRESQETFWSRFGISQSCGSRFENGENLPFIYLLLHFYIEGQITDRQLADLRGK........................................ 77
24 -30.1001per_L mol:protein length:69 PROTEIN (434 REPRESSOR)  ali model follow..  16  1........SISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKT-KRPRFLPELASALGVSVDWLLNGTSDSN...................................... 67
25 -30.0002jvl_A mol:protein length:107 TrMBF1  ali model follow..  14  31.....VGKEVGKAIEQGRQEPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLNVKLRGAN............................................. 96
26 -29.5005uk3_A mol:protein length:176 Uncharacterized protein  ali model follow..  19  11SSANYARQIMSNQFIKAKESKGLTYQQMAQLLSVNKVWLTSVLHGQNCCDIQLAHRICDTLGISHEYANELTSIPL...................................... 86
27 -29.1004z5h_A mol:protein length:72 Antitoxin HipB  ali model follow..  10  3.QKIYSPTQLANAMKLVRQQNGWTQAELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDAK........................................... 72
28 -28.8002r63_A mol:protein length:63 REPRESSOR PROTEIN FROM BACTERIOPHAGE 434  ali model follow..  17  1........SISSRVKSKMIQLGLNQAELAQKVGTTQQSIEQLENGKT-KRPRFLPELASALGVSVDWLLNGT.......................................... 63
29 -28.1003kxa_A mol:protein length:141 Putative uncharacterized protein  ali model follow..  9  55.ADKIALKAGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEVRAAFERRYEYMEQA................................ 135
30 -28.0001sq8_A mol:protein length:64 dh434  ali model follow..  18  1.......MLMGERIRARRIQLGLNQAELAQKVGVDQQAIEQLENGKA-KRPRFLPELARALGVAVDWLL............................................. 61
31 -27.7001zug_A mol:protein length:71 PHAGE 434 CRO PROTEIN  ali model follow..  14  1......MQTLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVT-KRPRFLFEIAMALNCDPVWLQYGTKRGKA..................................... 70
32 -27.6005woq_A mol:protein length:120 Transcriptional regulator ClgR  ali model follow..  9  6....LLREVIGDVLRNARTDQGRTLREVSDAARVSLGYLSEVERGRKEASSELLSAICDALDVPLSRVLTDAGESMARRE.................................. 81
33 -27.5003f51_A mol:protein length:117 Clp gene regulator (ClgR)  ali model follow..  12  25.....LREALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVADVLIEAAGSM...................................... 95
34 -27.2001rio_A mol:protein length:98 Repressor protein CI  ali model follow..  15  12..QLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSIARE....................................... 84
35 -26.9001dw9_A mol:protein length:156 CYANATE LYASE  ali model follow..  13  9....NIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSILLLQMIPL...................................... 80
36 -26.9004y42_A mol:protein length:156 Cyanate hydratase  ali model follow..  11  9....SPRETLTDTIMMAKIRKNLTFEAINQGTGLSLAFVTAALLGQHPLPEQAARVVAEKLDLDEDAIRLLQTIPL...................................... 80
37 -26.8003vk0_A mol:protein length:114 Transcriptional regulator  ali model follow..  12  13PDEQDLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQLLLPPQER....................................... 87
38 -26.7005fd4_A mol:protein length:324 ComR  ali model follow..  15  19...FMNDKEFGQRVRQLRESASMTREQFCDELELSVRQLTRIEAGASKPTFSKIQYIATRLGMGLYELMPDYVSLPERYSKLKFDVLRTPTYGNEDLAEKRDAMMTEIYDDYYD 130
39 -26.1002qfc_A mol:protein length:293 PlcR protein  ali model follow..  14  1....MQAEKLGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIML--CKQKRYKEIYNKVWNELK.... 103
40 -26.0003kz3_A mol:protein length:80 Repressor protein CI  ali model follow..  16  4QEQLEDARRLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVSVEEFSPSIARE....................................... 78
41 -25.9001y9q_A mol:protein length:192 transcriptional regulator, HTH_3 family  ali model follow..  23  4.TDVMFKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFANDPQ........................................ 76
42 -25.9005jub_A mol:protein length:310 Transcriptional regulator  ali model follow..  14  1...MNLKDSIGLRIKTERERQQMSREVLCLDGELTVRQLIRIEKGESLPSLDRLSYIAKRLGKSMTELLDQDNITIPDEYYEMKNRLIKFPTYRNP--DRIKSKLTLIEEVYEK 110
43 -25.6004ghj_A mol:protein length:101 Probable transcriptional regulator  ali model follow..  19  27.....LAEEIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAEKGKVQLDIMIAILMALDLTEQIDLFIPKQE......................................... 94
44 -25.6003fya_A mol:protein length:99 Regulatory protein  ali model follow..  10  19.....LLSKVSFVIKKIRLEKGMTQEDLAYKSNLDATYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKHD.................................. 93
45 -25.5002ef8_A mol:protein length:84 Putative transcription factor  ali model follow..  19  10........CLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVASRLGLPM............................................. 70
46 -25.4003g5g_A mol:protein length:99 Regulatory protein  ali model follow..  10  19.....LLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKHD.................................. 93
47 -25.2001s4k_A mol:protein length:120 putative cytoplasmic protein ydil  ali model follow..  12  1......AMMNALELQALRRIFDMTIEECTIYITNNSATWQRWEAGDIPISPEIIARLKEMKARRQRRINAIVDKIN...................................... 72
48 -25.2004pu3_D mol:protein length:118 Toxin-antitoxin system antidote transcriptional repressor Xre family  ali model follow..  16  36.ASPLNQQSLGLLIKERRKSAALTQDVAAMLCGVTKKTLIRVEKGED-VYISTVFKILDGLGIDIVSAQTSDTETN...................................... 109
49 -25.1001zz6_A mol:protein length:198 Hydroxypropylphosphonic Acid Epoxidase  ali model follow..  28  2SNTKTASTGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGETLTQLGRIAHVLGTSIGALTPPAGNDL...................................... 78
50 -24.7004ndw_A mol:protein length:153 Nucleoid-associated protein EspR  ali model follow..  15  19........TFAARLNRLPGRGPHTSAEVIAALTMSAPYLSQLRSGNRTPSGATMAALANFFRIKAAYFTDDEYYEKLDKDDGVRRIAQRAHGLPSAAQQKVLDRIDELRRAE.. 143
51 -24.7003qf3_A mol:protein length:133 ESX-1 secretion-associated regulator EspR  ali model follow..  15  5........TFAARLNRLFDRGPHTSAEVIAALTMSAPYLSQLRSGNRNPSGATMAALANFFRIKAAYFTDDEYYEKLDKDDGVRRIAQRAHGLPSAAQQKVLDRIDELRRAE.. 129
52 -24.7003r1f_A mol:protein length:135 ESX-1 secretion-associated regulator EspR  ali model follow..  15  7........TFAARLNRLFDRGPHTSAEVIAALTMSAPYLSQLRSGNRNPSGATMAALANFFRIKAAYFTDDEYYEKLDKELQVRRIAQRAHGLPSAAQQKVLDRIDELRRAE.. 131
53 -24.6002ewt_A mol:protein length:71 putative DNA-binding protein  ali model follow..  21  5.....YAKQLGAKLRAIRTQQGLSLHGVEEKSQWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQELL............................................. 70
54 -24.6001lli_A mol:protein length:92 PROTEIN (LAMBDA REPRESSOR)  ali model follow..  16  11..QLEDARRLKAIYEKKKNELGLSQESLADKLGMGQSGIGALFNGINALNAYNAALLAKILKVSVEEFS............................................. 77
55 -24.5002b5a_A mol:protein length:77 C.BclI  ali model follow..  12  3.NEIEIKRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFRKMEEEN...................................... 77
56 -24.4003bdn_A mol:protein length:236 Lambda Repressor  ali model follow..  14  9QEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSIARE....................................... 83
57 -24.1004yv6_A mol:protein length:284 Transcriptional regulator  ali model follow..  14  1.....MDKELGKTLRRLRQGKQVSISSLADEH-LSKSQISRFERGESEISCSRLLNLLDKLNITIDEFVSTHSKTHTHFFTLLSRVRKYYAEKNVAKLLKLLE........... 97
58 -24.1004ia8_A mol:protein length:82 Regulatory protein  ali model follow..  10  8.....LLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTAISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKHD.................................. 82
59 -23.9001y7y_A mol:protein length:74 C.AhdI  ali model follow..  20  5HDHYADLVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRELF............................................. 73
60 -23.9004i6t_A mol:protein length:82 Regulatory protein  ali model follow..  10  8.....LLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRAYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKHD.................................. 82
61 -23.8004i6u_A mol:protein length:82 Regulatory protein  ali model follow..  10  8.....LLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTFISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKHD.................................. 82
62 -23.8004fn3_A mol:protein length:82 Regulatory protein  ali model follow..  10  8.....LLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKALELIMKGLEVSDVVFFEMLIKEILKHD.................................. 82
63 -23.7004f8d_A mol:protein length:82 Regulatory protein  ali model follow..  10  8.....LLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSANLTIKSLELIMKGLEVSDVVFFEMLIKEILKHD.................................. 82
64 -23.7006b9s_A mol:protein length:457 Methylphosphonate synthase  ali model follow..  13  234LDFTNHENASLSLLEYYFELSNLTKEKFAKRTNFSMETLADFFTKKKLPTFDELKIIAKALNVNSRDLMPNDLTES...................................... 309
65 -23.4002ofy_A mol:protein length:86 Putative XRE-family transcriptional regulator  ali model follow..  14  8AEELERGQRLGELLRSARG--DMSMVTVAFDAGISVETLRKIETGRATPAFFTIAAVARVLDLSLDDVAA............................................ 76
66 -23.4002aw6_A mol:protein length:317 PrgX  ali model follow..  8  1......MFKIGSVLKQIRQELNYHQIDLYSGI-MSKSVYIKVEADSRPISVEELSKFSERLGVNFFEILNRAGMNTKSVNETGKEKLLISKI--FTNPDLFDKNFQRIEPKRLT 105
67 -23.2003f6w_A mol:protein length:83 XRE-family like protein  ali model follow..  12  15.........LLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIGTDPYALLSKLEAM....................................... 80
68 -23.2006b9r_A mol:protein length:450 Hydroxyethylphosphonate dioxygenase  ali model follow..  15  229SSLALTPGDHGAMLRSVMAARLTTVTELADRSGLKTDRVAALCRTPARAEWPELSALAEALGVSVRELLVPHTTTE...................................... 304
69 -22.9004ryk_A mol:protein length:306 Lmo0325 protein  ali model follow..  10  1......MGSYGELIREIRLSKGLTQKEVYTGI-ISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDEFFFIYRDFSSTEDDSFWIDFVEL--SGKNDVVGMQALLDKITLERTE 105
70 -22.8003qq6_A mol:protein length:78 HTH-type transcriptional regulator sinR  ali model follow..  19  5.........IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNQTNPSIQFLEKVSAVLDVSVHTLLDEKHETE...................................... 72
71 -22.2003rzz_A mol:protein length:446 Hydroxyethylphoshphonate Dioxygenase (PhpD)  ali model follow..  14  4......MRIDPFKLAHWMNARKYTAAQTADLAGLPLDDLRRLLGDENEPDPAAATALAEALSVEPSQLAADAHRNL...................................... 74
72 -21.9003eus_A mol:protein length:86 DNA-binding protein  ali model follow..  17  14........YLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACEGL.................................................. 69
73 -21.8005v5t_A mol:protein length:306 Conserved domain protein  ali model follow..  16  2.KEYMEYRPLGEEIERIRKGKNIPLRVFDE--GVSSRSYQRFVQGNSELRISDLAIIVEILSISPMEMT............................................. 68
74 -21.6005d50_A mol:protein length:199 Repressor  ali model follow..  19  100..........TLNAWMRKDTEMTSEKKVAVAAGIGPATVNRIMKAEVSTTIGVLSSLARAFGHEAYEMIIPVGAPGIIDYD-----HRMYAALPQEEKNKITSFINFVFEQNKS 198
75 -20.7003b7h_A mol:protein length:78 Prophage Lp1 protein 11  ali model follow..  17  4.....DGEFVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRKRPTITTIRKVCGTLGISVHDFFDFPPYNEVEK................................... 78
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.