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Query: 3pay_A mol:protein length:314 putative adhesin, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GSCDSIREDLPRCELWLEFVFDYNMEYADAFNPQVKSVDVLVFDSDDKLLFTKSVKVAALVGGNRMSLTDELDFGSYKVLTVGSLSDRFRLSDNAGNKLVPGTTTLQQVIVSLKRETGGVNFEFQHLYFGEVVEVDHLPSNTNHKIYPVNLIRDTNRFNLALMGYEENKVDGTQYTFEIQAPENAVYSWENEPTGQGPITYVPYYTGPGEISDVVMSARLNTMRLLNRSGWDYKFIIRDANTEAEVWSYNLMTLLSIARPVSRYDGTELPFQEYLDRQSEWNLVFTVVEKNGGGFLQIGIVVGTWIHWLHGMEVLast
1 -108.0003pay_A mol:protein length:314 putative adhesin  ali model  100  1GSCDSIREDLPRCELWLEFVFDYNMEYADAFNPQVKSVDVLVFDSDDKLLFTKSVKVAALVGGNRMSLTDELDFGSYKVLTVGSLSDRFRLSDNAGNKLVPGTTTLQQVIVSLKRETGGVNFEFQHLYFGEVVEVDHLPSNTNHKIYPVNLIRDTNRFNLALMGYEENKVDGTQYTFEIQAPENAVYSWENEPTGQGPITYVPYYTGPGEISDVVMSARLNTMRLLNRSGWDYKFIIRDANTEAEVWSYNLMTLLSIARPVSRYDGTELPFQEYLDRQSEWNLVFTVVEKNGGGFLQIGIVVGTWIHWLHGMEV 314
2 -79.4004qdg_A mol:protein length:310 Putative adhesin  ali model follow..  25  1GER--IYEDLAPCPVSLRFIYDYNMEYANAFAKKVDCLTLLVYDENGNYVDTRIVTGTELQDENYR-MKLDLKQGNYHFVAYGGLACNKSSF--LMKYTPGEGTGYTDLQVELDSLTNPRRKNLHGLYWGELTLAT----ADLYSEGTVEMMKNTNNIRVVLQQMNGEPVDDKKFEFEITDDN-ILFSYDNNLLENGMVTYTPWAQGQASAGVVVAYAELSTSRLMVRDWYSPKLTVRRKADGVEIINIPLINYLLMLKSDLYAS---MDSQEFLDRESEWSMIFFLSPNL--EWIKTYIKINDWTVRINDIR. 309
3 -77.5003gf8_A mol:protein length:296 putative polysaccharide binding proteins (DUF1812)  ali model follow..  31  2ASCDSFNEDLPECRLSVKFKYDYNMEFADAFHAQVDKVELYVFDKNGKYLFKQAEEGSALSTGN-YLMEVELPVGQYQFMAWAGARDSYDI-----TSLTPGVSTLTDLKLKLKREASLINKRMETLWYGEVINVNF--DGTVHQTETINLIRDTKIVRFGFQSYTGSWTLDMNDYDYEIIESNGHLGHDNSLLDDDVLSFRPYYM--EQKDPATAYVDMNTMRLMEDR--KTRLVLTEKASGKRVFDINLIDYLAMTNAEGK----NLSTQEYLDRQSNYHIIFFLS----ESWLAVQIVVNGWVHRIQEEN. 295
4 -65.5005nfi_B mol:protein length:281 Minor fimbrium anchoring subunit Mfa2  ali model follow..  15  1............CPRGVNFYSQTECAENPSYPAEVARLNVYAFDKDGILRSANVFEDVQLSAAKEWLIP-LEKDGLYTIFAWGNIDDHYNI-----GEIKIGETTKQQVLMRLKQDGKWTNIDGTTLWYATSPVVELEDGADQYIHTRANLREYTNRVTVSVDSLP----HPENYEIKLASSN-GSYRFDGTVAKADSTYYPGE---TKVVGDSTCRAFFTTLKLESGH--ENTLSVTHKPTGREIFRTDLVGAILSSQYAQNINLRC-------INDFDIRLVAHHCNCPDDTYVVVQIWINGWLIHSY.... 281
5 -35.5005cag_A mol:protein length:318 Uncharacterized protein  ali model follow..  7  4..TGCSRRDILDDYPVSGVDIKLDWDGVT--DQLPEGVRVIFYPKNGDGRKVDKYLSVR-------GGEMKVPPGRYSVVVYNYNTESIRIRGEE--SYETIEAYTGNCNGLGIEGTEKMVWSPDSLYVLNIDELKIE-KSEEVLRLDWKLESVVKKYSFAVE---KGLEYVATVVGSIDGLSDCYCIGKGRGVCSSQP-----IYFEVKKGDNKVTAFFTAFKQVEKGAIILILKFIKTDNTVQEATIDVTEIIGTLENAGTGEDGKPTPPPEIELPPDDKIEVDKPEPNPDGGGGMGGNVDGWGP-EDNVEL 315
6 -32.2005nf4_A mol:protein length:451 Minor fimbrium tip subunit Mfa3  ali model follow..  9  18QGAM--RGVDPQ-DVYLLVNARAANMDAEDFEDRVHSLAMLVFDSNTGEKVAEHFSSSIGSGTSTYVFTVKLKPGQRDFFFVANIPNMQTAM-----ASIVNKSDMNHFMQVFRDLDPIHYHNATNPMSRMYSNQTVTIGGTITGENNVKLQRVVAKLDVNIVEGVENLQK-----IELCNANVHYRLVPNQSEPIQFYGPVELRRVGATNQWEAIVESTKWWGNTGNAENKPINFFRLTTRGGLVYDVPIITHEGAIPGGQAKGLLADKPSYTVYRNRHYIYRIKTLPDK----IEVKYSICDWNIVTNDTYM 349
7 -29.8004jg5_A mol:protein length:355 Putative cell adhesion protein  ali model follow..  9  1.GKD--DPVLPLEGAKLSVAVKASGTATKAYEAYINNLAVVVFNETGTELLGYKWEALSGAEHSAIIADVTTKAVRARIIVLANVPRDLLSTVSTYDEFQTRLVDLSSQSQTNLTMSSQVIVTKSALSEEYLGYTDLGDQNVDGISDPILLTRVAARIDLVNISTRFAGTPFAGREVRIDAVGIYNMKTKSYYFSEADWG-ETEAPDAVRNSEDTSFEDLLVNDGTSISNTPFVHYVMENMKSDDHTMIAVKATLRGNSSYQDHTLQNGYDHNFIRRNYVYRLRIYFDGESVDTNLNIAVQVVGWGPVMQHPVI 354
8 -29.0004gpv_A mol:protein length:348 putative cell adhesion protein  ali model follow..  9  1.GND--GNNVPGEQAVLTIKLKGDGPATDTEDAVINNYLVFLFREGGALDCAPYEGSSNAA-----ATITTGTTAAKKAYVVANTGALAGGLFATVKTE----TDLLAVTGSLMDNTDNASTQTKTWMSGESEV---KFNGGTNAQVTVSLSFVAAKIQLIVKDNRKNMTGGTI-AAVLLFAGKKGRFFGSAAEKVTQNEFYTGFNQYTGAFDSGVTTSTALSD-NAGSTVFNHFYTFGNDGTTQPTILAIKSTKTVGGTSSPIF-TNTDARHTIEPGKSYTVTVTLNGDVASSSIEVTVTAAQWVTQPVDKEF 347
9 -27.9003up6_A mol:protein length:347 hypothetical protein BACOVA_04078  ali model follow..  9  1...GDVAYELPAHTTRAQLSIDLVNNGDVEQQEKINSMRFIVFGSTPGGVEHILLSTPETATDIDAQLLEVTSSNDILVVVIANEPQSLTSQLDGIAN----LLTLQEMIYDISSILNSDGQIISAPMTGVIRDISIA--PDETKTVQMVIERAVARVDVFIEAIDGGAVTGYTASVTLHNFSHDSYFVMGNVGNGTRDNADSSYSSAPGAENRKLLCSFYTAEFKSDYSDRLSISMANVLKGPSDVTGITGKVIESVTKVDGTGSPTAQPFTEIRRNNVYQVTARVGKIGI---QILTISVEDWGEIDLDMDL 347
10 -26.3003liu_A mol:protein length:402 Putative cell adhesion protein  ali model follow..  12  10.......KAPVLEKAQLALAIKSETGETTPTDADVNTLTVGVFGVDGWSVIYTKDATPN-SDGTKDVGPQEVYAGEAHVVVVANAAPVIQTELAKAKDITDFIETTINLSDETLTKGLTMSSKVLDV-EVGDITVKDISGKEVYGAGPVPLVRDVASIALAGADIGPENANYESKSFVLKEVFIASAKGVSSVASTELQTKYDALAKKHVENDPALNHEFYVYE-NEAYANHTLLIVKGDTKENCYYAIPVGE-------EVTIDGTEKRSKFYVQRNYKYEISLTIIGPGISTNVSASVKVEPWNVKTIHEEV 401
11 -25.3004jrf_A mol:protein length:508 putative cell adhesion protein  ali model follow..  11  1GACS--NDE-DGREAYMSVSVAMGEHHGTADEQNVKEVLLALFDASDVCLETKTLATTDYILNVG-GKAFKVPSATAKVLAVVNPSDK-------FKTACVASASWSAINGAVEQTLDEVTGTSKNNFM-TIPDVATAISEAQADRSMIYVDRVVAKVSLGTNPDGLKVPAGVTCTWALNITNKSMFTLPADFSAMADSKYCLENTMAADAQTQAQTTSAVA---KPDAAAGETVGVEYFQKGVCYYNILI-------HHDDAITATMAHGKYGVVRNNWYTLTIN-DDDDKEAYLSVEITVNPWTTWSQGVDL 508
12 -24.4004q98_A mol:protein length:369 Major fimbrial subunit protein  ali model follow..  7  2.......KD-VETNATVSFIIESRAVGDDLTDAKITKLTAMVYAGQVQEGIKTVEEDGGVLKVEGIPCK---SGANRVLVVVANHNYEKSLNEVEALTTSLTAENQNAKNLIMTGKSAAFTIKPGSNHYGYPGGTA--SDNLVSAGTPLAVTRVHAGISFAGVEVNMATQYQNYYSFKPADAKIAALVAKKDTPDAAGETYELEASLNTNYAVGAGFYVLESKYDASNELRPTILCIYCDGDGTTYYPVLVNYDGNGYIYSGAITQGQNK----IVRNNHYKISLNITGPGTQANLNVTCQVTPWVVVNQAATW 369
13 -22.9005dhm_C mol:protein length:282 Immunoreactive 32 kDa antigen  ali model follow..  11  1.......................ERNQGSAAERLITNLYLLLFDQSGANPAKYYIAGNTFSGGIWKLDMTQSEAGERKVYVVANVDNA-------VKTALDAVANESDLQTVKRTTAMPWSTDIASLMSGNKTHDF----LANRLLDNVPLVRAIAKVELNISLSEKFQIVPII-KFRYVNFDKETYVVKPTTKPDNLISSANGVWPQITDLNTSPAPDAGTGYTLDANGKVTALRIVDSKGATVEVALPRVDDGTLPPPEFGPELYRLPLPDKILRNHWYKYEVEI........................... 282
14 -21.1004rdb_A mol:protein length:305 Immunoreactive 32 kDa antigen PG49  ali model follow..  11  1..........GDRSIEISIRVRYERNQGSAAERLITNLYLLLFDQSGANPAKYYITGNTFTGGTWLPDMTQSEAGERKVYVVANVDN-------AVKTALDAVANESDLQTVKRTTAMPWSTDIASLMSGNKTHDF----LANRLLDNVPLVRAIAKVELNISLSEKFQIVPIIVKFRYVNFDKETYVVKPTTKPDNLISSANGVWPQITDWTVWGASLNTS---LDANGKVTALRIVDSKGATVEVALPRVDDGTLPPPEFGPELYRLPLPDKILRNHWYKYEVEI........................... 305
15 -20.4003r4r_A mol:protein length:296 hypothetical fimbrial assembly protein  ali model follow..  16  7.......FDTDELSFDMSLVLLTGDMQTKA-ELTIQNCHVAVFDKDGKRIYFKNFYSKDLGEMKTIVRTFGKEDKKVSVLVVANANNA-------NNSPFDNLTTYDGVDNSYTAKTIAKGPVTASLLVKIGKSETTLKYNQDNAPVTVSLIQLSAKIEYTGVYKKENGELLEGFSLT........................................................................................................................................ 192
16 -17.3005nf2_A mol:protein length:501 Minor fimbrium subunit Mfa1  ali model follow..  7  2..........................GEWAGKDKIEKVSIYMVPQGGPGLVESAETHNAILKPKKGIKVNSAVGKTVKVYVVLNDIAGKAKALLANVNAADFDAKFKEIITAAGKIAKKNGTTDETIMMTCLAVSEANAIAGIKNQAKVTVERSVARAMVSTKAAGSVLATITDIRWVVAQGERRQYDVTGELANALSGKFLLPNTHKSGANAALVRAKFTPKKEAFIDRGKTY-KAHKYVKGKVLYYAWLNP---------STTSPDSWWNSPVVRNNIYHIHIK-PLPDQDTFMSVEVTVLPWKVHSYEVDL 501
17 -14.2004k4k_A mol:protein length:282 Putative cell adhesion protein  ali model follow..  4  3......ENTPQPTDGRVALEATSGIRMNTRAYDK-DAIGIYMLNGDATYTTAQTAENGSFTAAEGQTIYFPVDASQRDFVAYYPYRETLA----------------DGNVYTVDVSVQTPQKDIDLMG-----AAKVEGKDKTDPKVAFVFTHKLVKLDITIKADGTSLTDAD---LAGTTVSISNQQTAATYNVVTGGDATVTTGTTKEIVLHTDGLKAEGIVLPAASTAGMALTFTVPGLEGQAFHWDV---------------NSAAQSKAFVAGSKYLYTITISKAG----VEVSSKVEDWT........ 270
18 -13.9005nf3_A mol:protein length:523 Minor fimbrium subunit Mfa1  ali model follow..  7  2..........AKSYMSMTLSMDYHYVGEWAGKDKIEKVSIYMVPQGGPGLVESAETHNAILKPKKGIKVNSAVGKTVKVYVVLNDIAGEIIELSTQAQALGTVADGPNPATAAGKIAKKNGTTDETIMMTCLQVSEANAIAGIKNQAKVTVERSVARAMVSTKAAGSVLATITDIRWVVAQGERRQYDVTGELANALSGKFLLPNTHKSGANAASSDYKRGNTAYVPKVGGVAGMKAHKYVKGKVLYYAWLNP---------STTSPDSWWNSPVVRNNIYHIHIK---PDQDTFMSVEVTVLPW......... 523
19 -12.9004qb7_A mol:protein length:359 Uncharacterized protein  ali model follow..  6  1...GEMTEMNPDTNRTIGLDVYTEVQTRGTETTT-AGFGIFAYQTSSNFMYNEHATWTSDSWGYTNLRFWPIDDKKITFFAYAPYESKPEVGTDQKITLSGQNAK-GAPTITFEVKTSNNWKDMIDLVTDCHTAIQDQTNESNKGTVQFKFSHVLTQIANIKVKPDVNLGTDTKIFVTGLKLDPGSTTLYNKTEQDLSDFLNKTTTDQWGYNKSSINVSDDQNATALFSDTEALYFIPVNNKNGTTNAGDLKLKINYDIVTKVTDTSNLTSTITFKKGTKHTYVLTIKMNAIK--ITVEDNMEGWT........ 348
20 -12.3004h40_A mol:protein length:327 putative cell adhesion protein  ali model follow..  10  1GAAG--PEEDMEDRVRIDPVAGGYYPSISPSAQT-STIRLVVYDDASLLYPCEVDDNGAVISSSSTPL---MKAGTYYFRILSPAKALNSKGFVNIGN--------GEYLLATDDRYTQTAMTAVTITKIDEG----GTLNNVQTLYLPPIINQTARMQFTVRGVHTLEMLAEGIEISGIQQPLDNTTSFDWVNGDVL---------PVKVGDQSASVRITQATRNADNSLVAHTGVLPTDARSHSISVLLNLKVNGNPTQYQMLLTGLY----LTAGHSYNYTATVKISN--GVTVLTWQNRSWTENVVMDK. 327
21 -12.3003t2l_A mol:protein length:308 Putative cell adhesion protein  ali model follow..  6  1.GSD--DREMDD-ALRVPLQVSSAVIKQEVVTRLAGAIGIFLSGTEPEIDNRKYVYSEGHWGPPTANDTIYLVGNDADVCAYYPYKDSYTDKT------------------VIPLQSQDYVETEDIYY------ALNTMINGFTPAITFDMVHAYSLVELKISENYFMPCEISKITLKNSNLKKGTINIAVDGSETGNYDLTTVTDASPHTLSVGESYVCRVLMIPVPLKIERTDAEGGEFGLSVSLVIDGQQMLVEIPYSELGE---------FRQGEKYVIGLKIKGTE----IVPTVKALEWE........ 295
22 -9.7503sy6_A mol:protein length:291 Fimbrial protein BF1861  ali model follow..  8  2.......EQEDKVSGEKTLAVVSASSDDRPSTRGIYALGVFRTTANTY--VKHIYSGGEWGADDVIKV----DYRNASFFAYYPYHTATGNYAGLAGGTTLTLQAQLF------------NAGEDICYGAGEASGGGPVSVYNPFVEFLNMKHAYARLRLTLTRGEKFDKTKKCNIQNITFKLTRSLDIASTAGATGGSAVAAGYVHNPNVNIATGKSVTYEYMFPPQPLDGSKLTILVTVDGVT-RSCDIS-----------------TLGSSLDSGKYYGVSLTFTDVG----ILSSAVVTVNNFTQVDTEL 291
23 -9.4403ufi_A mol:protein length:297 hypothetical protein BACOVA_04980  ali model follow..  6  6.......GKADRAYKPIEIYGNINEVVNNVQETRADRIGVTVEADEDQYRNETGGSFRVVNEGSTDNNIRLKGEGEFTLNAYYPYQGANGTLPGTEGVI--------AKTISGADQTTDKQPQIDFLF-------AQATGVRAESPVTFDFSHKMTKIILKFKATNGATLNNMKVYLK---QLEGSFNVTTGEAVAKSGATPNSELSMDIAKPAEGEMTASIILFPQDMPEKVLLEVRMNDETYTQ----------------------YMPVQNLESGHAYPYNVTFENPAMTI---TKAEIEDWI........ 284
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.