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Query: 3per_A mol:protein length:481 Benzoyl-CoA oxygenase component B, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MINYSERIPNNVNLNENKTLQRALEQWQPSFLNWWDDMGPENSSNYDVYLRTAVSVDPKGWADFGYVKMHDYRWGIFLAPQEGEKKITFGEHKGQDVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHAHFGRDGREEGEALLERRSGDEDNPRILTAFNEKTPDWLSFFMFTFITDRDGKFQLASLAESAFDPLARTCKFMLTEEAHHLFVGESGIARVIQRTCEVMKELGTDDPAKLRAAGVIDLPTLQKYLNFHYSVTSDLYGAEISSNAATYYTNGLKGRFEEEKIGDDHKLQNSEYEVMDVAGDKILTRHVPALSALNERLRDDWITDVQAGVDRWNRIPAKFGFDFRFTLPHKGFHRKIGMFADVHVSPDGRLISEAEWTHQHKNWLPTESDRLYVHSLMGRCLEPGKFANWIAAPARGINNQPVNFEYVRFNWSHPQFEKLast
1 -160.0003per_A mol:protein length:481 Benzoyl-CoA oxygenase component B  ali model  100  1MINYSERIPNNVNLNENKTLQRALEQWQPSFLNWWDDMGPENSSNYDVYLRTAVSVDPKGWADFGYVKMHDYRWGIFLAPQEGEKKITFGEHKGQDVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHAHFGRDGREEGEALLERRSGDEDNPRILTAFNEKTPDWLSFFMFTFITDRDGKFQLASLAESAFDPLARTCKFMLTEEAHHLFVGESGIARVIQRTCEVMKELGTDDPAKLRAAGVIDLPTLQKYLNFHYSVTSDLYGAEISSNAATYYTNGLKGRFEEEKIGDDHKLQNSEYEVMDVAGDKILTRHVPALSALNERLRDDWITDVQAGVDRWNRIPAKFGFDFRFTLPHKGFHRKIGMFADVHVSPDGRLISEAEWTHQHKNWLPTESDRLYVHSLMGRCLEPGKFANWIAAPARGINNQPVNFEYVRFNWSHPQFEK 481
2 -56.5003pvr_A mol:protein length:311 Phenylacetic acid degradation protein paaA  ali model follow..  14  5..............................................................................QEERFEQRIAQETAI--EPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDIYQK-------MLDGRMKYSSIFNYPTLSWADIGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGSEAQKQML-------------------QDAINRFWWPALMMFGPNDDNSPARSLTWKIKRFTNDELRQRFVDNTVPQVEMLGMTVPDPDLHFDTESGHYRFG---------EIDWQEFNEVINGRGICNQERLDAKRKAWEEGTWVREAALAHAQ..................................................................... 303
3 -55.3004iit_A mol:protein length:320 Phenylacetate-CoA oxygenase subunit PaaA  ali model follow..  15  1.........................................................................MGSSGSTEEQRFDQRIAQETAIEPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDLYQK-------MLDGQMKYSSIFNYPTLSWADIGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGNEAQRQM-------------------LQDAINRFWWPALMMFGPNNSPNSARSMAWKIKLHSNDELRQRFVDNTVPQVEILGMTVPDPDLQFDEASGHYRFG---------EIDWQEFNEVISGRGICNHERLAAKRKAWEEGEWVREAALAHAQ..................................................................... 306
4 -51.7003pvr_B mol:protein length:259 Phenylacetic acid degradation protein paaC  ali model follow..  12  1....................................................................................................MGSSGSNQLTAYTLRLGDNCLVLSQRLGEWCGHAPELEIDLALANIGLDLLGQARNFLSYAAELAGEG-----DEDTLAFTRDERQFSNLLLVEQPNGNFADTIARQYFIDAWHVALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLGNGTDVSGQKM-------------------QQAINKLWRFTAELFDADEIDIA---LSEEGIAVDPRTLRAAWEAEVFAGINEATLNVPQEQAYRTGGKKGLHTEHLGPMLAEMQYLQRV........................................................................................................... 247
5 -51.3004mud_A mol:protein length:235 Ring oxydation complex/ phenylacetic acid degradation related protein  ali model follow..  22  6...............................................................................................RSVKEVPQDLTNTLVNIIELRADFELAMVEQYSPWLVNAPTVDSRLFVAKLVSDELNHGWQLVRLLEEFKVKDVIERIS-------NARLGIHKLEVSNLPLFNWEDVIAFTFLVDGAGLYQLKILKDCSFEPLSTLASSMIKEEESHIFFSQNELRNYQNK------------------------NRMQGAINFWFPRAVEMLHMTWSLNETHLRDLNISDLTKNDLINGYIKTTNEELKKCGYNEVNYDKA..................................................................................................................................... 227
6 -50.1004iit_C mol:protein length:251 Phenylacetate-CoA oxygenase subunit PaaC  ali model follow..  12  2.......................................................................................................NNPNPVATYALRLGDNGLVLAQRLGAWCGHAPELEIDLALANIGLDLLGQARNFLSYAAELNGC-----GDEDTLAFGRDERQYSNLLLVEQPNGNFADTIARQFFIDVWHVALYSRLVNSRDAQLAAIAAKGLKEVRYHLRFSRGWLERLGNGTELSNRKM-------------------QQAVDNLWRFTGELFLADEVELS--LVEQGIA-VDPRELQAEWQSAVHTALLDSGLQIPQEAAFRSGGKQGLHSEHLGPLLAEMQ................................................................................................................ 240
7 -35.1005ux2_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  12  1..............................................................................................MTQLDFASAAYREAYSRINGVVIVGEGLANRHFQMLARRIPAD--RDELQRLGRMEGDHASAFVGCGRNLGVVADLPLARRLFQPLHDLFKRHDHDGNRAE------CLVIQGLIVECFAVAAYRHYLPVADAYARPITAAVMNDESEHLDYAETWLQRHFDQVKAR----------------------VSAVVVEALPLTLAMLQSLAADMRQI-------GMDPVETLASFSELFREALESVGFEAVEARRLLMRAAARM............................................................................................................................. 225
8 -34.1004z5s_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  10  3..........................................................................................ELAVRTEFDYSSEIYKDAYSRINAIVIEGEQEAYSNYLQMAELLPEDKEE--LTRLAKMENRHKKGFQACGNNLQVNPDMPYAQEFFAGLH------GNFQHAFSEGKVVTCLLIQALIIEAFAIAAYNIYIPVADDFARKITEGVVKDEYTHLNYGEEWLKANFATAKEE----------------------LEQANKENLPLVWKMLNQVQGD-------AKVLGMEKEALVEDFMISYGEALSNIGFSTREIMRMSSYGLAGV............................................................................................................................. 231
9 -33.8005uxi_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  11  7.............................................................................................QSKELDFKSETYKDAYSRINAIVIEGEQEAHENYITLAQLLPESHDE--LIRLSKMESRHKKGFEACGRNLAVTPDLQFAKEFFSGLH------QNFQTAAAEGKVVTCLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLKEHFAESKAE----------------------LELANRQNLPIVWKMLNQVEGDAHTM-------AMEKDALVEDFMIQYGEALSNIGFSTRDIMRLSAYGLIG.............................................................................................................................. 231
10 -33.8004kvr_A mol:protein length:244 Aldehyde decarbonylase  ali model follow..  10  22...............................................................................................ALPDFTSDRYKDAYSRINAIYIEGEQEAHDNYIAIGTLLPDHVEE--LKRLAKMEMRHKKGFTACGKNLGVEADMDFAREFFAPLR------DNFQTALGQGKTPTCLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCREE----------------------LLEANRENLPLIRRMLDQVAG-------DAAVLQMDKEDLIEDFLIAYQESLTEIGFNTREITRMAAAALVS.............................................................................................................................. 244
11 -33.6005uwz_A mol:protein length:243 Aldehyde decarbonylase  ali model follow..  10  9...............................................................................................AALDYRSDTYRDAYSRINAIVLEGEREAHANYLTLAEMLPDHAEA--LKKLAAMENRHFKGFQSCARNLEVTPDDPFARAYFEQLD------GNFQQAAAEGDLTTCMVIQALIIECFAIAAYNVYIPVADAFARKVTEGVVKDEYTHLNFGQQWLKERFVTVREG----------------------IERANAQNLPIVWRMLNAVEA-------DTEVLQMDKEAIVEDFMIAYGEALGDIGFSMRDVMKMSARGLASAPRQGS........................................................................................................................ 237
12 -33.5004quw_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  12  3..........................................................................................QLEASLELDFQSESYKDAYSRINAIVIEGEQEAFDNYNRLAEMLPDQRDE--LHKLAKMEQRHMKGFMACGKNLSVTPDMGFAQKFFERLH------ENFKAAAAEGKVVTCLLIQSLIIECFAIAAYNIYIPVADAFARKITEGVVRDEYLHRNFGEEWLKANFDASKAE----------------------LEEANRQNLPLVWLML----NEVADDARELGM---ERESLVEDFMIAYGEALENIGFTTREIMRMSAYGLAAV............................................................................................................................. 231
13 -32.5004pgi_A mol:protein length:250 Aldehyde decarbonylase  ali model follow..  10  22...............................................................................................ALPDFTSDRYKDAYSRINAIVIEGEQEAHDNYIAIGTLLPDHVEE--LKRLAKMEMRHKKGFTACGKNLGVKADMDFAREFFAPL------RDNFQTALGQGKTPTCLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCREE----------------------LLEANRENLPLIRRMADQVAGDAAVL-------QMDKEDLIEDFLIAYQESLTEIGFNTREITRMAAAALVS.............................................................................................................................. 244
14 -29.5005k53_A mol:protein length:262 aldehyde deformylating oxygenase  ali model follow..  12  32.............................................................................................ASPTIDFQTETYKDAYSRINAIVIEGEQEAHDNYLTLAELLA--DKKAELVGLSKMENRHMKGFQACGRNLKVTPDMAFAKQFFSELH------KNFQTAAAQGQIVTCLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLQAHFEESKAE----------------------LEAANRQNLPIIWKLLNAVADD-------ARVLGMEKDALIEDFMIAYGEALGNIGFNNRDIMRMSAQGLAA.............................................................................................................................. 256
15 -29.1005k52_A mol:protein length:265 Aldehyde decarbonylase  ali model follow..  10  29..........................................................................................QLEATAAIDYQSETYKDAYSRINAIVIEGEDEAANNYVRLAELMPEQSEE--LASLAKMEARHKKGFTACGKNLNVTPDMDFAKKFFSDLH------GNFQVAAAAGNIVTCLLIQALIIEAFAISAYNVYIPHADDFARKITENVVKDEYLHLNFGEQWLKANFESAKDELERANRENLAIVWRMLDEVAGDALVL-----------------------------GMEKEALMEDFTIAYQEALQNIGFSTRETLRMLTAGLAAAAA........................................................................................................................... 259
16 -28.2003dhg_A mol:protein length:500 toluene 4-monooxygenase hydroxylase alpha subunit  ali model follow..  10  3....................MHPRKDWYELTTNWTPSYVTEEQLFPERM-SGHMGIPLEKWESYDEPYKTSYPYVSIQREKDAGAYSVKAALERAKIYENSDPGWISTLKSHYGAIAVGEYAAVTGEGRMARFSKAPGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQFDWARAYHSNEWAAIAAKHFFDDIITGRDAISVFSFETGFTNMQFLGLAADAAEAGDYFANLISSIQTDESRHAQQGGPALQLLIENGKR---------------------EEAQKKVDMAIWRAWRLFAVLTGPVMDYYTPLEDRSQSFKEMYEWIIGQFERSLIDLGLDKPWYWDLFLKDIDELHHSYH--WYWRTTAWWNPAAGVTPEERDWLEEKYP--GWNKRWGRC----WDVITENVLNDRMDLVSPETLPSVCNMSQIPLVGVPGDDWNI-----EVFSLEHNGRLYHF-----EVDRWVFQQ 439
17 -27.7001mhy_D mol:protein length:521 METHANE MONOOXYGENASE HYDROXYLASE  ali model follow..  8  3.ISLATKAAT-----NRAPVGVEPQEVHKWLFNWDFK-----------ENRTKYPTKYHMANETKEQFKVIAKARMEAAKDERQFGTLLDGLTRLGAGNKVHPRWGETMKVISNFLEVGEYNAIAASAMLWDSATAAEQKNGYLAQVLDEIRHTHQCAFINHYYSKHYHDPAGHNDARRTRAIGPLWKGMKRV-FISGDAVECSVNLQLVGEACFTNPEWASANGDEITPTVFLSVETDELRHMANGYQTVVSIANDPASA--------------------KFLNTDLNNAFWTQQKYFTPVLGYLFEKFKVEPWVKTWNRWVSEDWGGIWIGRLGKYGVESPRSLRDAKRDAYWAHEANYPGWADHYGKIFNEWKKLGYEDPKSGFIPYQWLLANGHDGTGSLRVHEFNGKKHEPERYECH------NVFEQYEGRELSEVIAEGH-----VRSDGKTLIAQP-TLEDIK---PDP.... 517
18 -26.9002inn_C mol:protein length:333 Phenol hydroxylase component phL  ali model follow..  9  1MIKTNSVEPHTYGHIARRFGDKPATRYQEASYDIEFHYRPQWDSEHTLNDPTRTAIRMEDWCAVSDPRQFYYGYVGNRAKMQESAETSFGFCEKRNLLTRLSEETQKQLLRLLVPLRHVELGANMNNAKIAGDATATTVSQMHIYTGMDRLGIGQYLSRIALMIDGSTGAALDEAYWMDDEMWQPMRKLVEDTLVVDDWFELTLVQNILIDGMMYPLVQWFESQGAEDVSMLTEFMRDWYKESLRWTNAMMKAVAGESETNRELL-------------------QKWIDHWEPQAYEALKPLAEA-------------VGIDGLNEARAELSARLKKFELQSRGVSA...................................................................................................................................... 333
19 -24.4005uxg_A mol:protein length:220 aldehyde deformylating oxygenase  ali model follow..  11  3...............................................................................................KNWFSTPQEIREGIKYLSAHFYPASIMDRWKILKKLSFEKAKIIANYSLQQVIEEIEHFDFFNEYFKEDPLTTVRLPPSYIKL--------DGLVEDFQSSRWRENIATRFHMITETVGLKILNETSRKYNLLFNEGIKRIIEDEARHVSFGLSLIEDKEYAVKRVEELFPLAVQIVKEGKLGYSIQELVNLMEELKKARINKILGSGS................................................................................................................................................................................. 214
20 -24.4002inn_A mol:protein length:511 Phenol hydroxylase component phN  ali model follow..  9  1.............MVSKNKKLNLKDKYQYLTMAWEPTYQDKKDIFPE---EDFEGIKITDWSQWEDPFRLTMDAYWKYQAEKEKKLYAIFDAFAQNNGHQSDARYVNALKLFISGISPLEHAAFQGYSKVGRQFSGAGARVACQMQAIDELRHSQTQQHAMSHYNKHFNGLHDGPHMHDRVWYLSVPKSFFDDARSAGPFEFLTAISFSFEYV-VPFMSGAAYNGDMATVTFGFSAQSDEARHMTLGLEVIKFILEQHEDNVPI-------------------VQRWIDKWFWRGFRLLSLVSM-DYMLPNKVMSWSEAWEVYYEQNGGALFKDLERYGIRPPKYQDVANDAKHHLSHQLWTTFYQ-----------------------------------CQATNFHTWIPEKEEMDWMSEKYPDTFDKYYRPRYEYLAKEAAAGRRFYNNTLPQLCQVCQIPTEHEHFCSDGCCDIFKH 442
21 -24.2001fyz_A mol:protein length:527 METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN  ali model follow..  8  2......ALSTATKAATDAPTSVNAQEVHRWLQSFNWDFKNN---------RTKYATKYKMANETKEQFKLIAKARMEAVKDERQFGSLQDALTRLNAGVRVHPKWNETMKVVSNFLEVGEYNAIAATGMLWDSAQAAEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAGHNDARRTRTIGPLWKGMKRVFSDGGDAVECSLNLQLVGEACFTNPEWAAANGDEITPTVFLSIETDELRHMANGYQTVVSIANDPASA--------------------KYLNTDLNNAFWTQQKYFTPVLGMLFEKFKVEPWVKTWDRWVYEDWGGIWIGRLGKYGVESPRSLKDAKQDAYWAHHDLYLLAYALWPTGFFRLALPDQEE------------------EWFEANYPGWYDHYGK--YEEWRARGCEDPSSGFIPLMWFIENNHPIYIDRVSQVPFCPSNGEMHTF-----QWGERMWLA 459
22 -24.1001t0q_A mol:protein length:498 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  11  3....................MLKREDWYDLTTNWTPKYVTENELFPEEM-SGARGISMEAWEKYDEPYKITYPEYVSIQREKDSGAYSKAALERDGFVDRADPGWVSTMQLHFGAIALEEYAASTAEARMARFAKAPGNRNMATFGMMDENRHGQIQLYFPYANVKRSRKWDHKAIHTNEWAAIAARSFFDDMMMTRDSVAVSIMLTFAFENMQFLGLAADAAEAGDHFASLISSIQTDESRHAQQGGPSLKILVENGKK---------------------DEAQQMVDVAIWRSWKLFSVLTGPIMDYYTPESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGMH--WYWRPTVWWDPAAGVSPEEREWLEEKYP--GWNDTWGQC----WDVITDNLVNGKPELTVPETLPTICNMCNL-PIAHTPGNKWNVKDYQLE----YEGRLYHFRYKNHTNLVDRFLK 456
23 -21.3003ee4_A mol:protein length:323 Probable ribonucleoside-diphosphate reductase  ali model follow..  12  21..............................................SLPLKLFAGGNAKFWHPADIDFTRD-----------------------RADWEKLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMRAEADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTHKICVERAILPMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRLIEEGFALYGDQ-----------------------PPFDLSKDDFLQYSTDKGMRRFGTISNA............................................................................................................................................ 283
24 -20.9004hr0_A mol:protein length:316 Ribonuleotide reductase small subunit  ali model follow..  8  6...............DDKMVHHDGFQTVKATIDW----------EHPMFKLYEKAKRNGKWNPADIDFSQD-----------------------QKDFASLTSEEKISALPLVAGFSAGEEAVTLDILPMAHALARQEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDLNDHYKRIFYEALPEAMNRLYADDSPEAVIRAATVYNMIVEGTLAESRQIYKKAGLFPLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDERYYELFIRYMDELWPHVIGYVDYLTELGKRQQQLARTYALE------------------DYDLLRHYVIKQFNLRKKQISRT............................................................................................................................................ 294
25 -20.6005hyg_A mol:protein length:317 Uncharacterized protein  ali model follow..  13  1..............................................AIAENAVINRLVGNWHRRAAVKREEPDVYALFDPGRPDFREDMIPFRGHPIWERLSDETRSRLVAYNRNTVLIEQRIANPAFELVIGLGGQQLELAVAQAMVDEQYHTLMHINGSAVTRRMRRSDFSDRVLPDSHITTIHQEHLDRCEEPWQRSLTTLGFATVAEISINAYLDLLADDQQVVNSTTVKLHNRDEYCHASISGEMMKQVYEAPADRRRFLLEKVVAGLEAFVAPDFTTWESIVA------------FEGVPGWEKAAAEVREAQGGTHLVQDHSGIHTLLTEMDV............................................................................................................................................. 295
26 -19.6001t0q_B mol:protein length:330 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  12  1MSEQQPELKPLKTWSHLAGNRRRPSEYEVVSTNWELDSNLPMQTWYKKYCF-DSPLKHDDWNAFRDPDQLVYRYNLLQDGQESYVQGLFDQLNDRGHDQMLTREWVETLARFYTPARYLFHALQMGSVYIHQIAPASTITNCATYETADHLRWLTHTAYRTRELANCYPDVGFGKRERDVWENDPAWQGFRELIEKAWDWGEFTAINLVTKPAVEEALSLAQSEGDTLLGLLAQAQKRDAERHRRWSSALVKMALEKEGNR--------------------EVLQKWVAKWEPLADKAIEAYCSALPDG-----------ENAIVEAKSASRYVRQMMGL............................................................................................................................................. 330
27 -19.4002jcd_A mol:protein length:345 N-OXIDASE  ali model follow..  11  2.....SEFDSGETMREEQEEGIGSATLGRLVRAWPRRAA--------------------------VNKADILDEWADYDTLVPDYPLEIVPFAEHPLFLAAEPHQRQRVIGYNERVIATEQLIAEPAFDLVMHSDDPLIRKSVQQAIVDESFHTYMHMLAIDRTRELRK-ISERPPQPELVTYRRLRRVLADMPEQWERDIAVLVWGAVAETCINALLALLRDATIQPHSLITTLHLRDETAHGSIVVEVVRELYARNEQQRRALVRCLPIALEAFAEQDLSALLLELN------------AAGIRGAEEIVGDLRSTAGGTRLVRDFSGARKMVEQLGL............................................................................................................................................. 325
28 -18.7001za0_A mol:protein length:275 POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE)  ali model follow..  12  1MAQKPVAD--ALTLELEPVVEANMTRHLDTEDIWF-------------AHDYVPFDQGENF-----------------------------AFLGGRDWDPSQSTLPRTITDACEILLILKDNLAGHHRELVEHILEDWWGRWLGRWTAEEHLHAIALREYLVVTREVDPVANEDVRVQHVMKG---------YRAEKYTQVETLVYMAFYERCGAVFCRNLAAQIEEPLAGLIDRIARDEVRHEEFFANLVTHCLDYTRDETIAAIAARAADLDVLGA----------------------EAYRDKLQNVADAGIFG------KPQLRQLISDRITAWGLA............................................................................................................................................ 264
29 -18.1003dhg_B mol:protein length:327 toluene 4-monooxygenase hydroxylase beta subunit  ali model follow..  12  11..TWSHLAEMRKKPSEYDIVSRKLHYSTNNPDSPWELSPDSPMNLWYKQYRNASPLKHDNWDAFTDPDQLVYRYNLMQDGQESYVQSLFDQFNEREHDQMVREGWEHTMARCYSPLRYLFHCLQMSSAYVQQMAPASTISNCCILQTADSLRWLTHTAYRTHELSLTYPDAGLGEHERELWEKEPGWQGLRELMEKQFDWGEFVSLNLVVKPMIVESIQQAWENNDTLLPLLIDSQLKDAERHSRWSKALVKHALENPDNH--------------------AVIEGWIEKWRPLADRAAEA-----LSMLSSDILPAQYLERSTSLRASILT..................................................................................................................................................... 326
30 -17.7002vux_A mol:protein length:326 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT M2 B  ali model follow..  6  1.......MSSGVDLGTENLYFQSMKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKD-----------------------LPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSE---------------------ERVREIIVDAVKIEQEFL--------TEALPVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTN...................................................................................................................... 320
31 -17.6002rcc_A mol:protein length:346 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  10  7....KRKIYDTTASNASTGI---LNGKSSNVLNW-------DDVRFSWAYPLYKNMLANFWTPFEINMSHD-----------------------AKQFPTLTETEQEAFKKIIGLLAFLDSVQTDYSMRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKATQDEIFEYWKHDDVLKERNEFIIDGNPTPKTFLESIVYDVILEGL-AFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELTEETKTFVKTTLMKAADLEKDWFRYIIGD-----------------------KIPGINPEDMETYISFIANKRAVQLGME............................................................................................................................................ 299
32 -17.5002uw2_A mol:protein length:332 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M2 SUBUNIT  ali model follow..  8  1.........SMTKAAAPGVEDEPLLRENPRRFVI-------FPIEYHDIWQMYKKAEASFWTAEEVDLSKD-----------------------IQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGI-ASIFWLKKRGPMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSE------ERVREIIINAVRIEQEFLTEALPV-----------------------KLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFMENISLEGKTNFFEKRVGEYQR........................................................................................................... 314
33 -16.8002o1z_A mol:protein length:311 Ribonucleotide Reductase Subunit R2  ali model follow..  7  2.........DVLNISKIPIFSKKEKKFNEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSD-----------------------LKDFEKLNDNEKHFIKHVLAFFAASDGIVLENLASKFLRVKITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKERMNLHAIENIPAVKNKALWAAKWINDTNSFAERIVANACVEGILFSGSFCAKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPE---------------------EVVQNIVKEAVEVERSFI--------CESLPCDLIGMNSRLMSQYIEFVADRLLECLGSP............................................................................................................................................ 297
34 -16.8003vpm_A mol:protein length:286 Ribonucleoside-diphosphate reductase subunit M2  ali model follow..  9  1...........MGVEDEPLLRENPRRFV-------------FPIEYHDIWQMYKKAEASFWTAEAVDLSKD-----------------------IQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGI-ASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSE------ERVREIIINAVRIEQEFLTEALPV-----------------------KLIGMNCTLMKQYIEFVADRLMLELGFS............................................................................................................................................ 274
35 -16.5003hf1_A mol:protein length:351 Ribonucleoside-diphosphate reductase subunit M2 B  ali model follow..  8  12.LDQDERSSSDTNESEIKSNEEPLLRKSSRRFVI-------FPIQYPDIWKMYKQAQASFWTAEEVDLSKD-----------------------LPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEER---------------------VREIIVDAVKIEQEFL--------TEALPVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTNFFEKRVSEYQR........................................................................................................... 333
36 -16.4004bmo_A mol:protein length:322 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT BETA  ali model follow..  9  8..........................................KKEDDFSLMFWKQNIAQFWTEEEIAVSSD-----------------------KNTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYYRRLLK-YMAMVASVFLESYLFYSLYLAGQGKLTASGEIINLIIRDESIHGVFVGILAQQIFAELSAEQQEVQKETQELLMELYEGLVEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNHDFFSVKGNGYVKATNV............................................................................................................................................ 310
37 -16.2002p1i_A mol:protein length:349 Ribonucleotide reductase, small chain  ali model follow..  6  1.MAEVVNISKSASFSKQEKEFQKSKESNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSD-----------------------LKDFEKLNVNEKHFIKHVLAFFAASDGIVLENLASFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNFHAIENIPAIKNKALWAAKWINDTNSFAERIVANACVEGI-CAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENVVQ-----------------NIVKEAVEV------------ERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKVFHSKNPFNWMDLISLQGKTNFFEKRVADYQK........................................................................................................... 331
38 -16.1003ez0_A mol:protein length:225 uncharacterized protein with ferritin-like fold  ali model follow..  13  1.............................................................................................GMSTSPADTARYNRFVADLFGMMAYGELSAFERFSADARYSPTLHDRAVLGRIAVVEFRHYELVSARLEAMGIDAEDAMLP------------QAAVDYFHSRTRDWYESLMKAYVIDTVSADFYRAISRYVDAGTRDVIEQIQASDE-TTEVLRERLRSALADDPRLASRLA----LWGRRLLGEALTQAQRVSYEHAFLGSLIGGEDSAAAKELV----------SGLIAGLAEKHSKRMTQLGLTG........................................................................................................................................... 225
39 -15.8001kgn_A mol:protein length:329 Ribonucleotide reductase protein R2F  ali model follow..  8  1.............MSNEYDEYIANHTDPVKAINW-------NVIPDEKDLEVWDRLTGNFWLPEKIPVSND-----------------------IQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAILLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSYYNG-DDPLKKKVASTLLESFLFYSMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAQEEYKAYTFDLMYDLYENEIEYTEDIYD--------------------------DLGWTEDVKRFLRYNANKALNNLGYE............................................................................................................................................ 278
40 -15.7003n37_A mol:protein length:319 Ribonucleoside-diphosphate reductase 2 subunit beta  ali model follow..  10  1.......................MKLSRISAINW-------NKISDDKDLEVWNRLTSNFWLPEKVPLSND-----------------------IPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMPALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSEENAPLQRKAQIIQQHYRG-DDPLKKKIASVFLESF-WLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGREELKSFAFDLLLELYDNELQYTDELYA--------------------------ETPWADDVKAFLCYNANKALMNLGYE............................................................................................................................................ 268
41 -15.6006cwo_A mol:protein length:344 Ribonucleotide reductase  ali model follow..  9  26..........................................PFEYPEVLQFTEAINKAYWVHTEVDFTADTQ-------------------------AHLSLAEKTAVKNSLLAIAQIEVAVKSFWGNIYEHFPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDEFEKLLDVPVIRRRVDYLSNVLKDTKSNRKYMVSLILFSILIENVSLFSQFAIFKGYMKNVSNIIAWTSIDEQIHANGGIYIINKIREEFPDYDEETLALVRETVKDSIAVESDILDWIFE----------------------EGEIESIKKGDLVNFMKFRIDESLKQINIP............................................................................................................................................ 289
42 -15.3006ebo_A mol:protein length:355 Ribonucleoside-diphosphate reductase, beta subunit  ali model follow..  9  8LVPRGSTKNYYDRSVSPVEYAYFDQSQNMRAINW-------NKIVDEKDLEVWNRVTQNFWLPENIPVSND-----------------------LPSWNELDDDWQQLITRTFTGLTLLDTVQSSIGDVQIKNSLTEQEQVIYANFAFMVGVHARSYGTIFSTLCTSEQIEEAHEWVVDNEALQARPKALIPFYTA-DDPLKSKIAAALMPGFLLYGFYLSARGKLPNTSDIIRLILRDKVIHNFYSGYKYQLKVAKLSPEQAEMKQFVFDLLDKMIGLEKTYLHQLYD--------------------------GFGLADEAIRFSLYNAGKFLQNLGYE............................................................................................................................................ 298
43 -15.2001uzr_A mol:protein length:296 RIBONUCLEOTIDE REDUCTASE R2-2 SMALL SUBUNIT  ali model follow..  8  18..........................................RLQDEKDAEVWDRLTGNFWLPEKVPVSND-----------------------IPSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFRWSEENRNLQRKAEIVLQ-SYRGDEPLKRKVASTLLESFLFYSMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVRAELKDYTYELLFELYDNEVEYTQDLYD--------------------------EVGLTEDVKKFLRYNANKALMNLGYE............................................................................................................................................ 273
44 -15.2006gp2_A mol:protein length:345 Ribonucleoside-diphosphate reductase beta chain  ali model follow..  8  6MAKIKNQYYNESVSPIEY--AQQGFKGKMRSVNW-------NVVNDEKDLEVWNRITQNFWLPEKIPVSND-----------------------LTSWRTLTPEWQELITRTFTGLTLLDTIQATVGDVQVPNSLTDHEQVIYTNFAFMVAVHARSFGSIFSTLCSSEQIEEAHEWVINTETLQERAKALIP-YYVNDDPLKSKVAAALMPGFLLYGFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLSPEQAEMKEFVFKLLYELIDLEKAYLKELYE--------------------------DFGLADDAIRFSVYNAGKFLQNLGYD............................................................................................................................................ 294
45 -15.2001jk0_B mol:protein length:345 ribonucleoside-diphosphate reductase small chain 2  ali model follow..  4  1.MEAHNQFLKTFQKERHDMKEAEKDE----LLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKD-----------------------TEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSALQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNIPLFKEIANLPEVKHKAAFIERWISNDDS-AERLVAFAAKEGI-ASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNP---------------------KIIEKIITEAVEIEKEYY--------SNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAVNPFEFMEDVATAGKTTFFEKKVSDYQKASDMSKSATPSKEINFDD......................................................................................... 343
46 -15.1004n83_A mol:protein length:319 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  9  12..........................................AIEDVIDKSTWEKLTEQFWLDTRIPLSND-----------------------LDDWRKLSHKEKDLVGKVFGGLTLLDTLQSESGVDALRKVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKKAEIINEIYLN-GTALEKKIASVFLETFLFYSLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEDQEKLKEWMYDLLYTLYEGWTEEVKTFLRYNANKALMNLGQDPPDSADDVNPIVMNGISTGTSNHDFFSQVGNGYLLGEVE............................................................................................................................................ 308
47 -15.0004d8f_A mol:protein length:366 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  11  14..HMQADILDGKQKRVNLNSKRLVNCNQVDVNQL-------VPIKYKWAWEHYLNGCANNWLP---------------------TEIPMGKDIELWKSDRLSEDERRVILLNLGFFSTAESLVGNNIVLIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKEIFNAYNERAAIKAKDDNFRTDSVEGLQEFVKNLVGYYIIMEGI-VMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEITPELQQEIVELIKRAVDLEIEYAQDCLPR-----------------------GILGLRASMFIDYVQHIADRRLERIGLK............................................................................................................................................ 320
48 -14.9001h0n_A mol:protein length:390 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE  ali model follow..  7  59.........ESKAPTNPSVEDEPLLRENPRRFVV-------FPIEYHDIWQMYKKAEASFWTAEEVDLSKD-----------------------IQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGI-ASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQR---------------------VREIITNAVRIEQEFL--------TEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFRVENPFDFMENISLEGKTNFFEKRVGEYQR........................................................................................................... 372
49 -14.7001mrr_A mol:protein length:375 RIBONUCLEOTIDE REDUCTASE R1 PROTEIN  ali model follow..  7  1....AYTTFSATKNDQLK--EPMFFGQPVQVARY--------QQKYDIFEKLIEKQLSFFWRPEEVDVSRD-----------------------RIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMA-----------------EIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLD............................................................................................................................................ 322
50 -14.6004dr0_A mol:protein length:350 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  9  1MGSSSSGLVPR---------GSHMMTKIYDAANW-------SKHEDDFTQMFYNQNVKQFWLPEEIALNGD-----------------------LLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVAVDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQMIVGLKDDEISLFKAMVASVYLESFLFYSLYFYGQGKLMQSGEIINLILRDEAIHGVYVGLLAQEIYNKQTEEKAELREFAIDLLNQLYEGLSHDVKKFIRYNANKALMNLGFDPYFEEEDINPIVLNGLNTKTKSHDFFSMKGNGYKKATVE............................................................................................................................................ 328
51 -14.6001pfr_A mol:protein length:340 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  7  1....AYTTFSQTKNDQLK--EPMFFGQPVNVARY--------QQKYDIFEKLIEKQLSFFWRPEEVDVSRD-----------------------RIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEKTVTVSLRELKKKLYLCLMSVNALEAIRFYVFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDG------------------SMIGLNKDILCQYVEYITNIRMQAVGLD............................................................................................................................................ 322
52 -14.5001r2f_A mol:protein length:319 PROTEIN (RIBONUCLEOTIDE REDUCTASE R2)  ali model follow..  10  1.......................MKLSRISAINW-------NKIQDDKDLEVWNRLTSNFWLPEKVPLSND-----------------------IPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLMAAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEENPPLQRKAQIILA-HYVSDEPLKKKIASVFLESFLFYSMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIREELKLFALDLLMELYDNEIRYTEALYA--------------------------ETGWVNDVKAFLCYNANKALMNLGYE............................................................................................................................................ 268
53 -13.8001pj0_A mol:protein length:375 Ribonucleoside-diphosphate reductase 1 beta chain  ali model follow..  7  1....AYTTFSQTKNDQLK--EPMFFGQPVNVARY-------DQQKYDIFEKLIEKQLSFFFRPEEVDVSRD-----------------------RIDYQALPEHEKHIFISNLKYQTLLESIQGRSPNVALLPISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDG------------------SMIGLNKDILCQYVEYITNIRMQAVGLD............................................................................................................................................ 322
54 -13.6001biq_A mol:protein length:375 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  6  1....AYTTFSQTKNDQLK--EPMFFGQPVNVARY-------DQQKYDIFEKLIEKQLSFFWRPEEVDVSRD-----------------------RIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPISIPELETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQIQKRNGKTVTVSLRELKKKLYLCLMSVNALEAIRYYVFAFAERELMEGNAKIIRLIARDAALHLTGTQHMLNLLRSGADDPEMAEIA--------------EECKQECYDLFVQAAQQ---EKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLD............................................................................................................................................ 322
55 -13.4001jk0_A mol:protein length:419 ribonucleoside-diphosphate reductase small chain 1  ali model follow..  8  61..KLSKDAENHKAYLKSHQVHRHKLK-EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIH-------------------------NRMNENERFFISRVLAFFAASDGIVNENLVENFSEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFNAIHTIPEIGEKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAI------VEKIVTEAVEIEQRYFLDALPV-----------------------ALLGMNADLMNQYVEFVADRLLVAFGNKKYYKVENPFDFMENISLAGKTNFFEKRVSDYQK........................................................................................................... 392
56 -13.0004r42_A mol:protein length:236 Alr3090 protein  ali model follow..  13  17.....................................................................................................ANPRFAQLLLEQFGGATGELSAALQYWVQSFHVENAGIKDMLQDIAIEEFSHLEMVGKLIEAHTKNVDQTEAYKSMGPHFLDSQGNAWTASYLNEGGDVVRDLRANIAAEAGARQTYEELIKLSPDETKQTLVHLLTREISHTQMFMKALDSLGKLTDP............................................................................................................................................................................................................................. 183
57 -12.9001vjx_A mol:protein length:157 putative ferritin-like diiron-carboxylate protein TM1526  ali model follow..  9  1....................................................................................................MGSDKIMKVSDILTVAIRLEEEGERFYRELSEHFNG-EIKKTFLELADQERIHAEIFRKMSDQENWDEVDSYLAGYAFYEVFPDTSEILRR----KDLTLKEVLDIAISVEKDSIILYYELKDGLVNSAQKTVKKIIDQEKEHLRKLLEMKRES................................................................................................................................................................................................................................... 150
58 -12.7001mhy_B mol:protein length:395 METHANE MONOOXYGENASE HYDROXYLASE  ali model follow..  4  41FIQPRWKPLSEYEQLSCY-AQPNPDWIAGGLGDWTQKFHGG----RPSWGNESTELRTTDWYRHRDPARRWHHYVKDKSEEARYTQRFLAAYSSEGSIRTIDPYWDEILNKYFGALLYSEYGLFNAHSSVGRDCLSDTIRQTAVFAALDKVDNAQMIQMERLFIAKLVPGFDASTDVPKKI--SGARATVQEIWQGVQDWNELWAGHAVYDATREFFQRLATVYGDTLTPFFTAQSQTYFQTTRGAIDDLFVYCLANDSEFGAH---------------NRTFLNAWTEHYLASSVAALKDFVGAKVEKVAGATDSAGVSEALQRVFGDWKIDYADKIGFRVD.......................................................................................................................................... 381
59 -12.4002fzf_A mol:protein length:175 hypothetical protein  ali model follow..  11  20...........................................................................................................SLEELLGMAIKAEIGAREFYKSLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPKEHIGPELQPVAREL------EKVQDIIDLIRWAMKAEEIAAEFYLKLEEMVKEEKKRLMRYLADMERGHYYTLRAEYELLLNWE............................................................................................................................................................................................................................... 165
60 -12.2005olk_A mol:protein length:430 Ribonucleoside-diphosphate reductase, beta subunit 1  ali model follow..  10  19TAPFVEKITNAIANADAKLISMQVYESLLNNKEQESEYIPTVEQVQDMVEDKLMSSEFHDVAKAYIIYRNKRALERKTNIHSYWIHTEFNFTSDIQDFKTLSEVERSAIKNTMLAISQIEVAVKTFWGDVHHRLPKPEIAAVGATFAESEVRHHDAYSHLLEILGLNEEFKELKKKPVIMKRVHYLETSLKHADDDREYTESILLFALFIEHVSLFS----HKNMLKGISNAVEATSKEEQIHGDFGVDIINIIKKENPEWDEEHNNLIKEMCLNSFEAESKVVDWIFE----------------------KGELDFLPKAVINEFLKNRFNKSLEAIGLE............................................................................................................................................ 381
61 -12.1002uw1_A mol:protein length:338 PLASTID DELTA4 MULTIFUNCTIONAL ACYL-ACYL CARRIER PROTEIN DESATURASE  ali model follow..  14  1.MQVTHSMPP-----QKLEIFKSLDDW------------------ARNNVLIHLKSVEKSWQPQDYLPDPVSDG-----------------EEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYMSMLNRCAEPSAWAMWTRAWTAEENRHGDLLNKYLYLSGRVDMRKIEKTIQYLIGSGMDIKSENSPYLG-----FIYTSFQERATFISHANTAKLAQHYGDKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIAFADM.................................................................................................................................................................................................................... 233
62 -12.0001fyz_C mol:protein length:389 METHANE MONOOXYGENASE COMPONENT A, BETA CHAIN  ali model follow..  6  38FVTPRWKRLTEYEALTVY-AQPNADWIAGGLGDWTQKFHGG----RPSWGNETTELRTVDWFKHRDPLRRWHAYVKDKAEEWRYTDRFLQGYSADGQIRAMNPTWRDEFINYWGAFLFNEYGLFNAHSQGAREALSDVTRVSLAFWGFDKIDIAQMIQLERGFLGFDESTAVPKAEWTNGEVYKSARLAVEGLWQEVFDWNEAFSVHAVYDALREFFQRLAPRFGDNLTPFFINQAQTYFQIAKQGVQDLYYNCLGDDPEFSDY---------------NRTVMRNWTGKWLEPTIAALRD-----MGLFAKLPAGTTDKEEITASLYRVVDDWIEDYASRIDFKADRDQ................................................................................................................................... 379
63 -11.7001j30_A mol:protein length:144 144aa long hypothetical rubrerythrin  ali model follow..  9  1....................................................................................................MKDLKGTKTAENLKQGFIGESMANRRYLYFAKRADE-EIAGLLRSIAEGETAHAFGHLDFIRQGGLTDPATDKPIGTLEQMIESAIAGETYEWTQMYPGFAKVA-----------------REEGFPEVAEWFETLARAEKSHAEKFQNVLKQLKGGT............................................................................................................................................................................................................................... 144
64 -11.2005n5e_e mol:protein length:99 PFC_05175  ali model follow..  16  18.........................................................................................................KEELMEILRLAIIAELDAINLYEQMARYSEDENVRKILLDVAREEKAHVGEFMALLLNL............................................................................................................................................................................................................................................................................................................................. 76
65 -11.2002clb_A mol:protein length:188 DPS-LIKE PROTEIN  ali model follow..  10  23.........................................................................................................IKKLVDKLVKATAAEFTTYYYYTILRMHLTGMEGE-IAEDARLEDRLHFELMTQRIYELGGGLPRDIRQLADISACSDAYLPE-------NWKDPKEILKVLLEAEQCAIRTWKEVCDMTYG-TYDLAQRILQEEIEHEAWFLELLYGRPSGHFRRS........................................................................................................................................................................................................................... 178
66 -11.2001mmo_B mol:protein length:384 METHANE MONOOXYGENASE HYDROLASE (BETA CHAIN)  ali model follow..  7  33FVTPRWKRLTEYEALTVY-AQPNADWIAGGLDDWTQKFHGG----RPSWGNETTELRTVDWFKHRDPLRRWHAYVKDKAEEWRYTDRFLQGYSADGQIRAMNPTWRSSCNRYWGAFLFNEYGLFNAHSQGAREALSDVTRVSLAFWGFDKIDIAQMIQLERGFLGFDESTAVPKAEWTNGEVYKSARLAVEGLWQEVFDWNEAFSVHAVYDALREFFQRLAPRFGDNLTPFFINQAQTYFQIAKQGVQDLYYNCLGDDPEFSDY---------------NRTVMRNWTGKWLEPTIAALRDFMGLFAKLPAGTTDKEEITASLYRVVDDWIEDYASAIDFKAD.......................................................................................................................................... 371
67 -11.0003sid_A mol:protein length:180 Symerythrin  ali model follow..  9  24......................................................................................................NNTDANAASSIEVEMYECDCMYPTFAEIARRSGQPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLEAKRLVSTIESQIDAVAS----DSRGLRRALETALEVETIESQKTKLAAEQGNMEVATAFEAIVKSETKHANWVKRALENLLEVA............................................................................................................................................................................................................................... 180
68 -10.9001nf4_A mol:protein length:179 bacterioferritin  ali model follow..  10  2..................................................................................................AGNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMD-AANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFL--------------KVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDT............................................................................................................................................................................................................................. 152
69 -10.8004di0_A mol:protein length:144 Rubrerythrin  ali model follow..  7  3..................................................................................................GSMAQLKGSKTEENLKYAFAGESQANRRYLYFASKADV-DIAALFRSTAEGETGHAHGHLEYLEAVGDPATGLPFGTSRQNSAIAGETHEYTDMYPG---------------------MAKTARDEGFEEIANWFETLAKAERSHANRYTKALDGL................................................................................................................................................................................................................................... 142
70 -10.8001oq4_A mol:protein length:363 Acyl-[acyl-carrier protein] desaturase  ali model follow..  12  25....HVQVTHSMPPQKIE-IFKSLDNW------------------AEENILVHLKPVEKCWQPQDFLPDPASDG-----------------DEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGATRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPY--------LGFIYTSFQERATFISHGNTARQA-DILAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTLAFADMMRKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRSAEGQKAQDYVCRLPPRIRRLEERAQGRAKEAPT.................................................................................................................................. 350
71 -10.6002oh3_A mol:protein length:167 COG1633: Uncharacterized conserved protein  ali model follow..  11  4..........................................................................................................YTLAEFLAHAIALETEAAERYVELADMMEAHDTATVFRDMARFSTLHGDEIKQRSRALELPKLMSWQYRWKTPPEVGDEND-------HYLMTPYHALRYARDNEIRGMEYYKEAAANSADPVKRLGADFAAEEAEHVVALDKWIEKTPRPSI.............................................................................................................................................................................................................................. 154
72 -10.6002qqy_A mol:protein length:149 Sigma B operon  ali model follow..  10  8.........................................................................................................VKELIEGLNEDLAGEYSAIIMYNHNAATVSGIY-KPFFESEISDEQGHALYLAEKIKTLGGTPTTIPLRV-------------------KQAEDVREMLEYARQSEYETIKRYEKRKEQAANELVVKLEDMIADETNHMEELDRLLNDK................................................................................................................................................................................................................................... 144
73 -10.3006apd_A mol:protein length:573 Fusion glycoprotein F0,Envelope glycoprotein  ali model follow..  10  141LLGVGSAIASGVAVSKVLHLEGEVNKIKSALLS----------------------------------------------TNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIVNKQIETVIEFQQKNNRLLEITREFSVNAGVTTPVSTYMLTNSELLSLINDMPITNDQK-KLMSNNVQIVRQQSYSIMSIIKEEVLAYVVQLPLYGVIDTPCWKLHTSPLCTTNTKEGSNICLTRTDRGWYCDNAGSVSFFPQAETCKVQSNRVFCDTMNSLTLPSEVNLCNVDIFNPKYDCKIMTSKTDVSSSVITSLGAIVSCYGKTKCTASNKNRGIIKTFSNGCDYVSNKGVDTVSVGNTLYYVNKQEGKSLYVKGE-------IINFYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDELLSAIGGYIPEADGQAYVR----------KDGEWVL--STFLGSMEVLFQGPGSAWSHPQFEK 565
74 -10.2003k6c_A mol:protein length:95 Uncharacterized protein NE0167  ali model follow..  10  16.........................................................................................................ETRDMHRAIISLREELEAVDLYNQRVNACKDKELKAILAHNRDEEKEHAAMLLEWIRRCDPAFDKELKD................................................................................................................................................................................................................................................................................................................... 84
75 -10.1003qb9_A mol:protein length:174 Bacterioferritin  ali model follow..  11  1....................................................................................................MGMQGDPDVLRLLNEQLTSELTAINQYFLHSKMQDNWG-AAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGSLRIGQTLREQFEADLAIEYDVLNRLKPG--------------IVMCREKQDTTSAVLLEKIVADEEEHIDYLETQLELMDKLGEE............................................................................................................................................................................................................................. 149
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bourne PE, Allerston CK, Krebs W, Li W, Shindyalov IN, Godzik A.,Friedberg I, Liu T, Wild D, Hwang S, Ghahramani Z, Chen L, Westbrook J. The status of structural genomics defined through the analysis of current targets and structures. Pac Symp Biocomput. 2004;:375-86.