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Query: 3pvr_A mol:protein length:311 Phenylacetic acid degradation protein paaA, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRSTQEERFEQRIAQETAIEPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDIYQKMLDGRMKYSSIFNYPTLSWADIGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGSEAQKQMLQDAINRFWWPALMMFGPNDDNSPNSARSLTWKIKRFTNDELRQRFVDNTVPQVEMLGMTVPDPDLHFDTESGHYRFGEIDWQEFNEVINGRGICNQERLDAKRKAWEEGTWVREAALAHAQKQHARKVALast
1 -108.0003pvr_A mol:protein length:311 Phenylacetic acid degradation protein paaA  ali model  100  1MRSTQEERFEQRIAQETAIEPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDIYQKMLDGRMKYSSIFNYPTLSWADIGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGSEAQKQMLQDAINRFWWPALMMFGPNDDNSPNSARSLTWKIKRFTNDELRQRFVDNTVPQVEMLGMTVPDPDLHFDTESGHYRFGEIDWQEFNEVINGRGICNQERLDAKRKAWEEGTWVREAALAHAQKQHARKVA 311
2 -99.9004iit_A mol:protein length:320 Phenylacetate-CoA oxygenase subunit PaaA  ali model follow..  91  4SGSTEEQRFDQRIAQETAIEPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDLYQKMLDGQMKYSSIFNYPTLSWADIGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGNEAQRQMLQDAINRFWWPALMMFGPNDDNSPNSARSMAWKIKLHSNDELRQRFVDNTVPQVEILGMTVPDPDLQFDEASGHYRFGEIDWQEFNEVISGRGICNHERLAAKRKAWEEGEWVREAALAHAQKQQARSAA 314
3 -71.7004iit_C mol:protein length:251 Phenylacetate-CoA oxygenase subunit PaaC  ali model follow..  14  2...........................NNPNPVATYALRLGDNGLVLAQRLGAWCGHAPELEIDLALANIGLDLLGQARNFLSYAAELNGCGDELAFGRDERQYSNLLLVEQPNGNFADTIARQFFIDVWHVALYSRLVNSRDAQLAAIAAKGLKEVRYHLRFSRGWLERLGNGTELSNRKMQQAVDNLWRFTGELFLADEVELSLVEQGI-----AVDPRELQAEWQSAVHTALLDSGLQIPQEAAFRSGGGLHSEHLGPLLAEMQYLQRSH...................................... 246
4 -71.1003pvr_B mol:protein length:259 Phenylacetic acid degradation protein paaC  ali model follow..  16  1........................MGSSGSNQLTAYTLRLGDNCLVLSQRLGEWCGHAPELEIDLALANIGLDLLGQARNFLSYAAELAGEGDELAFTRDERQFSNLLLVEQPNGNFADTIARQYFIDAWHVALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLGNGTDVSGQKMQQAINKLWRFTAELFDADEIDIA-----LSEEGIAVDPRTLRAAWEAEVFAGINEATLNVPQEQAYRTGGGLHTEHLGPMLAEMQYLQRVL...................................... 248
5 -66.6004mud_A mol:protein length:235 Ring oxydation complex/ phenylacetic acid degradation related protein  ali model follow..  19  1..............GMQKLRSVKEVPQDLTNTLVNIIELRADFELAMVEQYSPWLVNAPTVDSRLFVAKLVSDELNHGWQLVRLLEEFKVKDVIERISNARLGIHKLEVSNLPLFNWEDVIAFTFLVDGAGLYQLKILKDCSFEPLSTLASSMIKEEESHIFFSQNELRNY-----QNKNRMQGAINFWFPRAVEMLHMTWSLNE--THLRDLNISDLTKNDLINGYIKTTNEELKKCGYNEVNYDKALHYNVVL........................................................ 234
6 -56.5003per_A mol:protein length:481 Benzoyl-CoA oxygenase component B  ali model follow..  14  79....APQEGEKKITFGEHKDVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHAHFGRDGREEGEGDEDNPRILTAFNEKTPDWLSFFMFTFITDRDGKFQLASLAESAFDPLARTCKFMLTEEAHHLFVGESGIARVIQRTCEVMKELQKYLNFHYSVTSDLYGAEISSNA--ATYYTNGLKGRFEEEKIGDDHKLQNSEYEVMDVAGDKILTRHVPALSALNERQAGVDRWNRIPAKFGFDFRFTLPHKGFHRKIGMFADVHVSPDGR........ 412
7 -48.6005ux2_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  12  1..................MTQLDFASAAYREAYSRINGVVIVGEGLANRHFQMLARRIP--ADRDELQRLGRMEGDHASAFVGCGRNLGVVADLPLARRLFQPLHDLFKRHDHDGNRAELVIQGLIVECFAVAAYRHYLPVADAYARPITAAVMNDESEHLDYAETWLQRHF---DQVKARVSAVVVEALPLTLAMLQSLAAD---------MRQIGMDPVETLASFSELFREALESVGFEAVEARRLLMRAAAR........................................................ 224
8 -45.7004quw_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  13  8...................LELDFQSESYKDAYSRINAIVIEGEQEAFDNYNRLAEMLPDQRDE--LHKLAKMEQRHMKGFMACGKNLSVTPDMGFAQKFFERLHENFKAAAAEGKVVTLLIQSLIIECFAIAAYNIYIPVADAFARKITEGVVRDEYLHRNFGEEWLKANFDASKA---ELEEANRQNLPLVWLMLNEVADD---------ARELGMERESLVEDFMIAYGEALENIGFTTREIMRMSAYG........................................................... 227
9 -45.2004kvr_A mol:protein length:244 Aldehyde decarbonylase  ali model follow..  12  22...................ALPDFTSDRYKDAYSRINAIYIEGEQEAHDNYIAIGTLLPDHVEE--LKRLAKMEMRHKKGFTACGKNLGVEADMDFAREFFAPLRDNFQTALGQGKTPTLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCRE---ELLEANRENLPLIRRMLDQVAGD---------AAVLQMDKEDLIEDFLIAYQESLTEIGFNTREIT................................................................. 235
10 -45.0004z5s_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  11  8...................TEFDYSSEIYKDAYSRINAIVIEGEQEAYSNYLQMAELLPEDKEE--LTRLAKMENRHKKGFQACGNNLQVNPDMPYAQEFFAGLHGNFQHAFSEGKVVTLLIQALIIEAFAIAAYNIYIPVADDFARKITEGVVKDEYTHLNYGEEWLKANFATAKE---ELEQANKENLPLVWKMLNQVQGD---------AKVLGMEKEALVEDFMISYGEALSNIGFSTREIMRMSSYG........................................................... 227
11 -44.7005uxi_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  12  9...................KELDFKSETYKDAYSRINAIVIEGEQEAHENYITLAQLLPESHD--ELIRLSKMESRHKKGFEACGRNLAVTPDLQFAKEFFSGLHQNFQTAAAEGKVVTLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLKEHFAESKA---ELELANRQNLPIVWKMLNQVEGD---------AHTMAMEKDALVEDFMIQYGEALSNIGFSTRDIM................................................................. 222
12 -44.5005uwz_A mol:protein length:243 Aldehyde decarbonylase  ali model follow..  12  9...................AALDYRSDTYRDAYSRINAIVLEGEREAHANYLTLAEMLPDHAEA--LKKLAAMENRHFKGFQSCARNLEVTPDDPFARAYFEQLDGNFQQAAAEGDLTTMVIQALIIECFAIAAYNVYIPVADAFARKVTEGVVKDEYTHLNFGQQWLKERFVTVRE---GIERANAQNLPIVWRMLN---------AVEADTEVLQMDKEAIVEDFMIAYGEALGDIGFSMRDVM................................................................. 222
13 -43.4004pgi_A mol:protein length:250 Aldehyde decarbonylase  ali model follow..  12  22...................ALPDFTSDRYKDAYSRINAIVIEGEQEAHDNYIAIGTLLPDHVEE--LKRLAKMEMRHKKGFTACGKNLGVKADMDFAREFFAPLRDNFQTALGQGKTPTLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCRE---ELLEANRENLPLIRRMADQVAGD---------AAVLQMDKEDLIEDFLIAYQESLTEIGFNTREIT................................................................. 235
14 -40.6005k53_A mol:protein length:262 aldehyde deformylating oxygenase  ali model follow..  13  34...................PTIDFQTETYKDAYSRINAIVIEGEQEAHDNYLTLAELLA--DKKAELVGLSKMENRHMKGFQACGRNLKVTPDMAFAKQFFSELHKNFQTAAAQGQIVTLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLQAHF---EESKAELEAANRQNLPIIWKLLNAVADD---------ARVLGMEKDALIEDFMIAYGEALGNIGFNNRDIMRMSAQG........................................................... 253
15 -39.6005k52_A mol:protein length:265 Aldehyde decarbonylase  ali model follow..  11  37......................DYQSETYKDAYSRINAIVIEGEDEAANNYVRLAELMPEQSEE--LASLAKMEARHKKGFTACGKNLNVTPDMDFAKKFFSDLHGNFQVAAAAGNIVTLLIQALIIEAFAISAYNVYIPHADDFARKITENVVKDEYLHLNFGEQWLKANFESAKD---ELERANRENLAIVWRMLD---------EVAGDALVLGMEKEALMEDFTIAYQEALQNIGFSTRETLRMLTAG........................................................... 253
16 -37.5001mhy_D mol:protein length:521 METHANE MONOOXYGENASE HYDROXYLASE  ali model follow..  9  65MEAAKDERQFGTLDGLTRLGAGNKVHPRWGETMKVISNFLEVGEYNAIAASAMLWDSATAAEQKNGYLAQVLDEIRHTHQCAFINHYYSKHYHDPAGHNDARRTRAIGPLWKGMKRVFALVGEACFTNPLIVAVTEWASANGDEITPTVFLSVETDELRHMANGYQTVVSIAND-PASAKFLNTDLNNAFWTQQKYFTPLGYLFEYGSKFKVEPWVKTWNRWVSEDWGGIWIGRLGKYGVESPRSLRDAKRDAYWAHHDALPDEEDQAWFEANYPGWADHYGKIFNEWKKLGYEDPKSGFIPYQWLLANGH 408
17 -36.8002inn_C mol:protein length:333 Phenol hydroxylase component phL  ali model follow..  11  87NRAKMQESAETSFGFCEKRNLLTRLSEETQKQLLRLLVPLRHVELGANMNNAKIAGDATATTVSQMHIYTGMDRLGIGQYLSRIALMIDGSTGAALDESKAY-QPMRKLVEDVVDDWFEILIDGMMYPLVYDKMDQWFESQGAEDVSMLTEFMRDWYKESLRWTNAMMKAVAGESETNRELLQKWIDHWEPQAYEALKP----------------EASVGIDGLNEARAELSARLKKFELQSRGVS................................................................. 332
18 -34.0005uxg_A mol:protein length:220 aldehyde deformylating oxygenase  ali model follow..  7  3...................KNWFSTPQEIREGIKYLSAHFYPASIMDRWKILKKLSFEKAKIIANYSLQQVIEEIEHFDFFNEYFKEDPLTTVRLPPSYIKLFDGLVEDFQSSRWRENIATRFHMITEGVLAILNETSRKYNLLKFNEGIKRIIEDEARHVSFGLSLIEDKEYAVKRVEELFPLAVQIV--------------KEGKDKIEPLGYSIQELVNLMEELKKARINKILGSG........................................................................ 213
19 -33.4003dhg_A mol:protein length:500 toluene 4-monooxygenase hydroxylase alpha subunit  ali model follow..  11  61IQREKDAGAYSVKAALERAKIYENSDPGWISTLKSHYGAIAVGEYAAVTGEGRMARFSKAPGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQFDWAWRAY-IAAKHFFDDIITG-LTFSFETGFTNMQFLGLAADAAEAGDYTFANLISSIQTDESRHAQQGGPALQLLIE--NGKREEAQKKVDMAIWRAWRLFAVLTGPVMDYYTPLE---SQSFKEFMYEWIIGQFERSLIDLGLDKPWYWDLFLKDIDELHHSAGVTPEERDWLEEKYPGWNKRWGRCWDVITEN.................... 379
20 -33.0004hr0_A mol:protein length:316 Ribonuleotide reductase small subunit  ali model follow..  11  35.AKRNGKWNPADIDFSQDQKDFASLTSEEKISALPLVAGFSAGEEAVTLDILPMAHALARQEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDIFYEALPEAMNRLYADDSPEAVIRAATVYNMIVEGTYTFRQIYKKAGLFPGLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDERYYELFIRYMDELWPHVIGYVDYLTELGKRQQQLARTYALEIDYDLLRHYVIKQFNLRKKQISRT...................................................................... 294
21 -31.8001fyz_A mol:protein length:527 METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN  ali model follow..  10  70MEAVKDERQFGSLDALTRLNAGVRVHPKWNETMKVVSNFLEVGEYNAIAATGMLWDSAQAAEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAGHNDARRTRTIGPLWKGMKRVFSLVGEACFTNPLIVAVTEWAAANGDEITPTVFLSIETDELRHMANGYQTVVSIAND-PASAKYLNTDLNNAFWTQQKYFTPLGMLFEYGSKFKVEPWVKTWDRWVYEDWGGIWIGRLGKYGVESPRSLKDAKQDAYWAHHDLYL-QEEMEWFEANYPGWYDHYGKIYEEWRARGCEDPSSGFIPLMWFIENNH 413
22 -31.4003ee4_A mol:protein length:323 Probable ribonucleoside-diphosphate reductase  ali model follow..  12  29.GGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMRAEADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMYAWHKICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRL------IEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNA...................................................................... 283
23 -30.5002inn_A mol:protein length:511 Phenol hydroxylase component phN  ali model follow..  9  64YQAEKEKKLYAIFDAFAQNNGHQNIDARYVNALKLFISGISPLEHAAFQGYSKVGRQFSGAGARVACQMQAIDELRHSQTQQHAMSHYNKHFNGLHDGPHMHDDDARSAGPFEFLTAISFSFEYVLTNLLFVPFMSGAAYNGDMATVTFGFSAQSDEARHMTLGLEVIKFILEQHEDNVPIVQRWIDKWFWRGFRLLSLVSMMMDYMLPNKVMSWSEA--EVYYEQNGGALFKDLERYGIRPPKYQDVANDAKHHLSH------QLWTTFYQYCQATNFHTWIPEK--EEMDWMSEKYPDTFDKYYRP... 375
24 -30.3001t0q_A mol:protein length:498 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  12  61IQREKDSGAYSIKAALERDGFVDRADPGWVSTMQLHFGAIALEEYAASTAEARMARFAKAPGNRNMATFGMMDENRHGQIQLYFPYANVKRSRKWDWAHKAI-IAARSFFDDMMMT-LTFAFETGFTNMQFLGLAADAAEAGDHTFASLISSIQTDESRHAQQGGPSLKILVE--NGKKDEAQQMVDVAIWRSWKLFSVLTGPIMDYYTPLE-SRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGAGVSPEEREWLEEKYPGWNDTWGQCWDVITDNL................... 380
25 -27.3001t0q_B mol:protein length:330 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  8  89LQDGQESYVQGLFDQLNDRGHDQMLTREWVETLARFYTPARYLFHALQMGSVYIHQIAPASTITNCATYETADHLRWLTHTAYRTRELANCYPDVGFGKRERDVWENDPAWQGFRELIEFTAINLVTKPAVEEALSLAQSEGDTLLGLLAQAQKRDAERHRRWSSALVKMALEK-EGNREVLQKWVAKWEPLADKAIEA------------------PDGENAIVEAKSASRYVRQMMGL....................................................................... 330
26 -27.0003dhg_B mol:protein length:327 toluene 4-monooxygenase hydroxylase beta subunit  ali model follow..  10  86MQDGQESYVQSLFDQFNEREHDQMVREGWEHTMARCYSPLRYLFHCLQMSSAYVQQMAPASTISNCCILQTADSLRWLTHTAYRTHELSLTYPDAGLGEHERELWEKEPGWQGLRELMELVVKPMIVESIFKPLQQQAWENNDTLLPLLIDSQLKDAERHSRWSKALVKHALEN-PDNHAVIEGWIEKWRPLADRAA.................................................................................................................. 297
27 -25.4002o1z_A mol:protein length:311 Ribonucleotide Reductase Subunit R2  ali model follow..  10  56.KAEASFWTAEEIDLSSDLKDFEKLNDNEKHFIKHVLAFFAASDGIVLENLASKFRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKERMNPAVKNKALWAAKWINDTNSFAERIVANACVEGILCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPE--EVVQNIVKEAVEVERSFI----------CESLPCDLIGMNSRLMSQYIEFVADRLLECLGSP...................................................................... 297
28 -25.2002vux_A mol:protein length:326 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT M2 B  ali model follow..  7  56.QAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKRMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGV-AAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSE--ERVREIIVDAVKIEQEF----------LTEALPVGLIGMNCILMKQYIEFVADRLLVELGFS...................................................................... 298
29 -25.0002rcc_A mol:protein length:346 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  9  47.NMLANFWTPFEINMSHDAKQFPTLTETEQEAFKKIIGLLAFLDSVQTDYSMRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKATQDEIFEYWKHDDVLK--NPTPKTFLESIVYDVILEGL-AFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELTEETKTFVKTTLMKAADL------EKDWFRYIIGDKIPGINPEDMETYISFIANKRAVQLGME...................................................................... 299
30 -24.9002uw2_A mol:protein length:332 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M2 SUBUNIT  ali model follow..  8  39.KAEASFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVEFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKERMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGI-ASIFWLKKRGPMPGLTFSNELISRDEGLHCDFACLMFKHLVH--KPSEERVREIIINAVRIEQEFL----------TEALPVKLIGMNCTLMKQYIEFVADRLMLELGFS...................................................................... 281
31 -24.8003vpm_A mol:protein length:286 Ribonucleoside-diphosphate reductase subunit M2  ali model follow..  8  32.KAEASFWTAEAVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKERMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSE--ERVREIIINAVRIEQEFL----------TEALPVKLIGMNCTLMKQYIEFVADRLMLELGFS...................................................................... 274
32 -23.6003hf1_A mol:protein length:351 Ribonucleoside-diphosphate reductase subunit M2 B  ali model follow..  7  58.QAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKRMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSE--ERVREIIVDAVKIEQEFL----------TEALPVGLIGMNCILMKQYIEFVADRLLVELGFS...................................................................... 300
33 -23.4003ez0_A mol:protein length:225 uncharacterized protein with ferritin-like fold  ali model follow..  13  10..........................ARYNRFVADLFGMMAYGELSAFERFSADARYSPTLHDRAVLGRIAVVEFRHYELVSARLEAMGIDAEDAMLPFQAAVDYFHSRTR---ADWYESLMKAYVIDTVSADFYRAISRYVDAGTRDVIEQIQASDE-TTEVLRERLRSALADDPRLASRLALWGRRLLGEALTQAQRVSYEHAFLGSLIGGEDSAAAKELVSAGLAEKHSKRMTQLGLTG..................................................................... 225
34 -23.1006cwo_A mol:protein length:344 Ribonucleotide reductase  ali model follow..  8  38.AINKAYWVHTEVDFTADTQDFHALSLAEKTAVKNSLLAIAQIEVAVKSFWGNIYEHFPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDEFEKLLDVPVIRRRVDYLQDNRKYMVSLILFSILIENVAILLSFTRFKGYMKNVSNIIAWTSIDEQIHANGGIYIINKIREEFPDYDEETLALVRETVKDSIAV-----ESDILDWIFEEGEIESIKKGDLVNFMKFRIDESLKQINIP...................................................................... 289
35 -23.1004d8f_A mol:protein length:366 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  12  59.NGCANNWLPTEIPMGKDIELSDRLSEDERRVILLNLGFFSTAESLVGNNIVLIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKEIFNAYNERAAIKAKD-EGLQEFVKNLVGYYIIMEGI-VMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEITPELQQEIVELIKRAVDL------EIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLK...................................................................... 320
36 -22.8002p1i_A mol:protein length:349 Ribonucleotide reductase, small chain  ali model follow..  9  57.KAEASFWTAEEIDLSSDLKDFEKLNVNEKHFIKHVLAFFAASDGIVLENLASFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNPAIKNKALWAAKWINDTNSFAERIVANACVEGILCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENQNIVKEAVE--------------VERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCS...................................................................... 298
37 -22.7001za0_A mol:protein length:275 POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE)  ali model follow..  9  14LEPVVEANMTRHLDTEDIWFAHDYVPSTLPRTITDACEILLILKDNLAGHHRELVEHILEDWWGRWLGRWTAEEHLHAIALREYLVVTREVDPVANED--VRVQHVMKGYRAEKYTQVETLVYMAFYERCGAVFCRNLAAQIEEPLAGLIDRIARDEVRHEEFFANLVTHCLDYTRDETIAAIAARAADLDVLGADIEAYRDKLQNVADAGIFG---------KPQLRQLISDRITAWGLA...................................................................... 264
38 -22.7004bmo_A mol:protein length:322 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT BETA  ali model follow..  10  20.QNIAQFWTEEEIAVSSDKNTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEK-EVTKKELYMAMVASVFLESYLFYPLYLAGQGKLTASGEIINLIIRDESIHGVFVGILAQQIFAELSAEQQEVQKETQELLMELYEI------EMAYTEEIYTSIG---LVEDVNRFVRYNANKGLMNLGLE...................................................................... 271
39 -22.7001jk0_B mol:protein length:345 ribonucleoside-diphosphate reductase small chain 2  ali model follow..  7  51.KVEASFWTAEEIELAKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKANLPEVKHKAAFIERWISNDDSLYAERLVAFAAKEGIFASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNP--KIIEKIITEAV----------EIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNE...................................................................... 292
40 -22.5001h0n_A mol:protein length:390 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE  ali model follow..  9  97.KAEASFWTAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKERMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVH--KPAEQRVREIITNAVRIEQEF----------LTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFN...................................................................... 339
41 -22.4001uzr_A mol:protein length:296 RIBONUCLEOTIDE REDUCTASE R2-2 SMALL SUBUNIT  ali model follow..  11  30.RLTGNFWLPEKVPVSNDIPSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEISEENRNLQRKAEIVLQSYRGDEPLKRKVASTLLESFLYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVRAELKDYTYELLFELYDN------EVEYTQDLYDEVGLT---EDVKKFLRYNANKALMNLGYE...................................................................... 273
42 -22.2001kgn_A mol:protein length:329 Ribonucleotide reductase protein R2F  ali model follow..  10  35.RLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAILLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQISEENENLQRKAKIIMSYYNGDDPLKKKVASTLLESF-YLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAQEEYKAYTFDLMYDLYEN------EIEYTEDIYDDLG---WTEDVKRFLRYNANKALNNLGYE...................................................................... 278
43 -22.0003n37_A mol:protein length:319 Ribonucleoside-diphosphate reductase 2 subunit beta  ali model follow..  10  25.RLTSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVSEENAPLQRKAQIIQQHYRGDDPLKKKIASVFLESF-WLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGREELKSFAFDLLLELYDN------ELQYTDELYAETP---WADDVKAFLCYNANKALMNLGYE...................................................................... 268
44 -21.9004n83_A mol:protein length:319 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  10  24.KLTEQFWLDTRIPLSNDLDDWRKLSHKEKDLVGKVFGGLTLLDTLQSESGVDALKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEITNTNPYLQKKAEIINEIYLNGTALEKKIASVFLETFLFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEDQEKLKEWMYDLLYTLYEN------EEGYTESLYDTVG---WTEEVKTFLRYNANKALMNLGQD...................................................................... 267
45 -21.7006gp2_A mol:protein length:345 Ribonucleoside-diphosphate reductase beta chain  ali model follow..  10  51.RITQNFWLPEKIPVSNDLTSWRTLTPEWQELITRTFTGLTLLDTIQATVGDVQVPNSLTDHEQVIYTNFAFMVAVHARSFGSIFSTLCSSEQIVINTETLQERAKALIPYYVNDDPLKSKVAAALMPGF-YLPFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLSPEQAEMKEFVFKLLYELIDL------EKAYLKELYEDFGLA---DDAIRFSVYNAGKFLQNLGYD...................................................................... 294
46 -21.2001r2f_A mol:protein length:319 PROTEIN (RIBONUCLEOTIDE REDUCTASE R2)  ali model follow..  12  25.RLTSNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVSEENPPLQRKAQIILAHYVSDEPLKKKIASVFLESFLWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIREELKLFALDLLMELYDN------EIRYTEALYAETG---WVNDVKAFLCYNANKALMNLGYE...................................................................... 268
47 -20.9002jcd_A mol:protein length:345 N-OXIDASE  ali model follow..  12  84......................LAAEPHQRQRVIGYNERVIATEQLIAEPAFDLVMHSDDPLIRKSVQQAIVDESFHTYMHMLAIDRTRELRK--ELVTYRRLRRVLADMPEQWERDIAVLVWGAVAETCINALLALLARDAQPMHSLITTLHLRDETAHGSIVVEVVRELYARNEQQRRALVRCLPIALLLELNAAGIRGAEEIVGD------LRSTAGGTRLVRDFSGARKMVEQLGL....................................................................... 325
48 -20.8006ebo_A mol:protein length:355 Ribonucleoside-diphosphate reductase, beta subunit  ali model follow..  10  55.RVTQNFWLPENIPVSNDLPSWNELDDDWQQLITRTFTGLTLLDTVQSSIGDVQIKNSLTEQEQVIYANFAFMVGVHARSYGTIFSTLCTSEQIVVDNEALQARPKALIPFYTADDPLKSKIAAALMPGF-YLPFYLSARGKLPNTSDIIRLILRDKVIHNFYSGYKYQLKVAKLSPEQAEMKQFVFDLLDKMIGL------EKTYLHQLYDGFGLA---DEAIRFSLYNAGKFLQNLGYE...................................................................... 298
49 -20.7001pfr_A mol:protein length:340 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  7  42.KQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRA-RELKKKLYLCLMSVNALEAIRACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPAEECKQECYDLFVQAAQQ-----EKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLD...................................................................... 322
50 -20.7005hyg_A mol:protein length:317 Uncharacterized protein  ali model follow..  7  53......................ERLSDETRSRLVAYNRNTVLIEQRIANPAFELVIGLGGQQLELAVAQAMVDEQYHTLMHINGSAVTRSDFSDRVLPDSHITTIHQEHLDRCEEPWQRTLGFATVAEISINAYLDLLADDQQVVNSTTVKLHNRDEYCHASISGEMMKQVYEAPADRRRFLLEKVVAGLESIVAFEGVPGWEKAAAE------VREAQGGTHLVQDHSGIHTLLTEMDV....................................................................... 295
51 -20.6001mrr_A mol:protein length:375 RIBONUCLEOTIDE REDUCTASE R1 PROTEIN  ali model follow..  7  42.KQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVLLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRA-RELKKKLYLCLMSVNALEAIRACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPAEECKQECYDLFVQAAQQ-----EKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLD...................................................................... 322
52 -20.5001jk0_A mol:protein length:419 ribonucleoside-diphosphate reductase small chain 1  ali model follow..  10  116.RAEASFWTAEEIDLSKDIHDNNRMNENERFFISRVLAFFAASDGIVNENLVEFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESIPEIGEKAEWALRWIQDADALFGERLVAFASIEGVFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDP--AIVEKIVTEAVEIEQRYF----------LDALPVALLGMNADLMNQYVEFVADRLLVAFGNK...................................................................... 359
53 -20.2001pj0_A mol:protein length:375 Ribonucleoside-diphosphate reductase 1 beta chain  ali model follow..  7  42.KQLSFFFRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLESIQGRSPNVLLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRA-RELKKKLYLCLMSVNALEAIRACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPAEECKQECYDLFVQAAQQ-----EKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLD...................................................................... 322
54 -19.9001biq_A mol:protein length:375 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  6  42.KQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALPLISIPELETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQIQKRA-RELKKKLYLCLMSVNALEAIRACSFAFAERELMEGNAKIIRLIARDAALHLTGTQHMLNLLRSGADDPAEECKQECYDLFVQAAQQ-----EKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLD...................................................................... 322
55 -19.5004dr0_A mol:protein length:350 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  8  39.QNVKQFWLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVAEDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETYLQKKAQMIVGLYKAIQKDDEISLFKAMVASVYLESF-YYPLYFYGQGKLMQSGEIINLILRDEAIHGVYVGLLAQEIYNKQTEEKAELREFAIDLLNQLYEN------ELEYTEDLYDQVGLS---HDVKKFIRYNANKALMNLGFD...................................................................... 289
56 -18.5001j30_A mol:protein length:144 144aa long hypothetical rubrerythrin  ali model follow..  12  1........................MKDLKGTKTAENLKQGFIGESMANRRYLYFAKRADE-EIAGLLRSIAEGETAHAFGHLDFIRQGGLTDPATDKPIGTLEQMIESAIAGETYEWTQMY------------FAKVAREEGFPEVAEWFETLARAEKSHAEKFQNVLKQLKGGT........................................................................................................................................ 144
57 -17.4001mhy_B mol:protein length:395 METHANE MONOOXYGENASE HYDROXYLASE  ali model follow..  6  115DKSEEARYTQRFLAAYSSEGSIRTIDPYWDEILNKYFGALLYSEYGLFNAHSSVGRDCLSDTIRQTAVFAALDKVDNAQMIQMERLFIAKLVPGFDASTDVPKKATVQEIWQGVQDWNELWAGHAVYDATREFFQRLATVYGDTLTPFFTAQSQTYFQTTRGAIDDLFVYCLANDSENRTFLNAWTEHYLASSVAALKDFVGLYAKVEKVAGATDSAGVSEALQRVFGDWKIDYADKIGFRVD.................................................................... 381
58 -17.2002clb_A mol:protein length:188 DPS-LIKE PROTEIN  ali model follow..  11  23.............................IKKLVDKLVKATAAEFTTYYYYTILRMHLTGMEGE-IAEDARLEDRLHFELMTQRIYELGGGLPRDIRQLADISACSDAYLPENWKDPKEILKVLLEAEQCAIRTWKEVTYGKDPRTYDLAQRILQEEIEHEAWFLELLYGR............................................................................................................................................ 170
59 -17.0001vjx_A mol:protein length:157 putative ferritin-like diiron-carboxylate protein TM1526  ali model follow..  12  1........................MGSDKIMKVSDILTVAIRLEEEGERFYRELSEHFNG-EIKKTFLELADQERIHAEIFRKMSDQENWDEVDSYLAGYAFYEVFPDTSEILRRTLKEVLDIAISVEKDSIILYYELKDLVNSDAQKTVKKIIDQEKEHLRKLLEMKRES............................................................................................................................................ 150
60 -16.7005olk_A mol:protein length:430 Ribonucleoside-diphosphate reductase, beta subunit 1  ali model follow..  11  130.AIRHSYWIHTEFNFTSDIQDFKTLSEVERSAIKNTMLAISQIEVAVKTFWGDVHHRLPKPEIAAVGATFAESEVRHHDAYSHLLEILGLNEEFKELKKKPVIMKRVHYLDDDREYTESILLFALFIEHVLIIMAFNKHKNMLKGISNAVEATSKEEQIHGDFGVDIINIIKKENPEWDEEHNNLIKEMCLNSFEA-----ESKVVDWIFEKGELDFLPKAVINEFLKNRFNKSLEAIGLE...................................................................... 381
61 -16.5004r42_A mol:protein length:236 Alr3090 protein  ali model follow..  10  17.........................ANPRFAQLLLEQFGGATGELSAALQYWVQSFHVENAGIKDMLQDIAIEEFSHLEMVGKLIEAHTKNVDQTEAYKSTLFAVRGMGPHNEGGDVVRDLRANIAAEAGARQTYEELIKSPDEGTKQTLVHLLTREISHTQMFMKALDSLGKLTD....................................................................................................................................... 182
62 -16.3002uw1_A mol:protein length:338 PLASTID DELTA4 MULTIFUNCTIONAL ACYL-ACYL CARRIER PROTEIN DESATURASE  ali model follow..  11  18LDDWARNNVLIHLKSVEKWQPQDYLPDPVSDDYFVVLVGDMITEEALPTYMSMLNRCDGIKDETGATRAWTAEENRHGDLLNKYLYLSGRVDMRKIEKTIQYLIGSGMDIKSENS--YLGFIYTSFQERATFISHANTAKYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTIAFADMMRKKITMPAHLMYDGSDELLFKHFTAVAQRLGVYS---ALDYCDILEFLVDKWNVE------RLTGLSDEGRKAQEYVCELGPKIRRLEERAQGRAKEAPTM--PFSWIRQVKL............ 338
63 -15.9002fzf_A mol:protein length:175 hypothetical protein  ali model follow..  11  20...............................SLEELLGMAIKAEIGAREFYKSLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMPGKEVVFPKEHIGPELQPVARELEKVQDIIDLIRWAMKAEEIAAEFYLKLEEVKEEEKKRLMRYLADMERGHYYTLRAEYELLLNWEM....................................................................................................................................... 166
64 -15.5004di0_A mol:protein length:144 Rubrerythrin  ali model follow..  11  1....................GPGSMAQLKGSKTEENLKYAFAGESQANRRYLYFASKADV-DIAALFRSTAEGETGHAHGHLEYLEAVGDPAQNLQSAIAGETHEYTDMYPG---------------------MAKTARDEGFEEIANWFETLAKAERSHANRYTKALDGL............................................................................................................................................ 142
65 -15.3001fyz_C mol:protein length:389 METHANE MONOOXYGENASE COMPONENT A, BETA CHAIN  ali model follow..  6  112DKAEEWRYTDRFLQGYSADGQIRAMNPTWRDEFINYWGAFLFNEYGLFNAHSQGAREALSDVTRVSLAFWGFDKIDIAQMIQLERGFLAKIVPGFDESTAVPKALAVEGLWQEVFDWNEAFSVHAVYDALREFFQRLAPRFGDNLTPFFINQAQTYFQIAKQGVQDLYYNCLGDDPENRTVMRNWTGKWLEPTIAAL------RDFMGLFAKLPAGTTDKEEITASLYRVVDDWIEDYASRID.................................................................... 372
66 -15.3002qqy_A mol:protein length:149 Sigma B operon  ali model follow..  13  5..........................SHDVKELIEGLNEDLAGEYSAIIMYAATVSGIYRQVLKPFFESEISDEQGHALYLAEKIKTLGGTPTTIPLRVKQAE------------DVREMLEYARQSEYETIKRYEKRKNLNMTELVVKLEDMIADETNHMEELDRLLNDK............................................................................................................................................ 144
67 -15.3001oq4_A mol:protein length:363 Acyl-[acyl-carrier protein] desaturase  ali model follow..  9  43LDNWAEENILVHLKPVEKVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGATRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENS--YLGFIYTSFQERATFISHGNTARHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTLAFADMMRKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTA---KDYADILEFLVGRWKVD--KLTGLSAEGQKAQDYVCRLPPRIRRLEERAQGRAKEAPTM------PFSWIRQVKL............ 363
68 -15.2001nf4_A mol:protein length:179 bacterioferritin  ali model follow..  10  2......................AGNREDRKAKVIEVLNKARAMELHAIHQYHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDAD--QEDATIEAYSQ-----FLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDT...................................................................................................................................... 152
69 -14.7003qb9_A mol:protein length:174 Bacterioferritin  ali model follow..  13  1........................MGMQGDPDVLRLLNEQLTSELTAINQYSKMQDNWGFTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGSLRIGQTLREQFEADLA--IEYDVLNRLKP-----GIVMCREKQDTTSAVLLEKIVADEEEHIDYLETQLELM............................................................................................................................................ 143
70 -14.7003sid_A mol:protein length:180 Symerythrin  ali model follow..  12  24..............................NNTDANAASSIEVEMYECDCFAEIARRSGQPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLEAKRLVSTIESQIDAVSRGLRRALETALEVETIESQKTKLAAEQGNMEVATAFEAIVKSETKHANWVKRALENLLEVA........................................................................................................................................ 180
71 -14.3005n5e_e mol:protein length:99 PFC_05175  ali model follow..  13  18.............................KEELMEILRLAIIAELDAINLYEQMARYSEDENVRKILLDVAREEKAHVGEFMALLLNL............................................................................................................................................................................................................................... 76
72 -14.2003dde_A mol:protein length:239 TENA/THI-4 protein, Domain of Unknown Function with a Heme Oxygenase-like Fold  ali model follow..  11  2MSIIDLTKLEQKVAT-HEVLDGKATKALYAIYMTETYHYTKH----NAKNQALVGIMGKDLPGKYFCFHHAHEEAGHELMALSDIASIGFDREDVLSSKPLPATETLIAYLYWIGNPVQRLGYSYWAENVYGYIDPVLKAIQ-PQSMKFFIAHSKIDAKHAEEVNEMLHEVCK-TQEDVDSVVAVMENSLVLTARILD................................................................................................................. 215
73 -14.1003gvy_A mol:protein length:161 Bacterioferritin  ali model follow..  10  2...........................QGDAKVIEYLNAALRSELTAVSQYYRLQEDWGFGSIAHKSRKESIEEMHHADKLIQRIIFLGGHPNLQRLNPLRIGQTLRETLDADLA--AEHDARTLYIE-----ARDHCEKVRDYPSKMLFEELIADEEGHIDYLETQIDLMGSIGEQNYGMLN................................................................................................................................ 153
74 -14.1003fvb_A mol:protein length:182 Bacterioferritin  ali model follow..  8  17...........................KGEPKVIERLNEALFLELGAVNQYYRLLNDWGYTRLAKKEREESIEEMHHADKLIDRIIFLEGFPNLQTVSPLRIGQNVKEVLEADLK--GEYDARASYKE-----SREICDKLGDYVSKQLFDELLADEEGHIDFLETQLDLLAKIGGERYGQLN................................................................................................................................ 168
75 -14.0005zur_A mol:protein length:158 Bacterioferritin  ali model follow..  7  2...........................KGDKTVIQFLNKQLTNELTAINQYARMLNHWGFDKLGKHEYEESIGEMKHADRLIARIFMLDGLPNLQDLHKLLIGEDVPELLACDLK--LEQAAHATVRE-----AIAHCESVRDYVSRDLFQDILDDTEEHIDYLETQIDLI............................................................................................................................................ 141
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 3 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.