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Query: 3qbm_A mol:protein length:199 TetR transcriptional regulator, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GMRKGQETRERVVAQAAALFNVSGYAGTAISDIMAATGLEKGGIYRHFESKEQLALAAFDYAAEKVRERFAVGLAGHKHTVDTIIAFLDVFRSYAERPPLVGGCPILNTAIESDDTNPMLRERVRAVIDEWRETIRTLVQTGIARGEIRPEVDADRLALLIIATMEGAVMLARILETATPLEHAYTHLATYITQQVRLALast
1 -87.4003qbm_A mol:protein length:199 TetR transcriptional regulator  ali model  100  1GMRKGQETRERVVAQAAALFNVSGYAGTAISDIMAATGLEKGGIYRHFESKEQLALAAFDYAAEKVRERFAVGLAGHKHTVDTIIAFLDVFRSYAERPPLVGGCPILNTAIESDDTNPMLRERVRAVIDEWRETIRTLVQTGIARGEIRPEVDADRLALLIIATMEGAVMLARILETATPLEHAYTHLATYITQQVRLA 199
2 -78.7003eup_A mol:protein length:204 Transcriptional regulator, TetR family  ali model follow..  32  6.LSKSDRTRQFIIESTAPVFNVKGLAGTSLTDLTEATNLTKGSIYGNFENKEAVAIAAFDYNWGHVKSVLTAKVQACNTYKEMLLVYSSMYNDADGSLFPVGGCPLLNTTIEADDTHDALRKKAGEAILSWKKNLVTIIKKGIQAKEFRPDTDVTKIAFSMIALVEGAILIHRATKNRAYSDYVFESLEDLIAG..... 198
3 -78.5003bru_A mol:protein length:222 Regulatory protein, TetR family  ali model follow..  17  25.APDASLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYHYFRNKADFGLALIEAYDTYFARLLDQAFDGSLAPLARLRLFTRMAEEGMARHGFRRGCLVGNLGQEMGALPDDFRAALIGVLETWQRRTAQLFREAQACGELSADHDPDALAEAFWIGWEGAILRAKLELRPDPLHSFTRTFGRHFVTRTQ.. 221
4 -77.9004yze_A mol:protein length:201 HTH-type transcriptional repressor NemR  ali model follow..  20  4NKHTEHDTREHLLATGEQLSLQRGFTGMGLSELLKTAEVPKGSFYHYFRSKEAFGVAMLERHYAAYHQRLTELLQSGENYRDRILAYYQQTLNQFSQHGTISGCLTVKLSAEVSDLSEDMRSAMDKGARGVIALLSQALENGRENHSLTFSGEPLQQAQVLYALWLGANLQAKISRSFEPLENALAHVKNIIAT..... 198
5 -75.5003rd3_A mol:protein length:197 Probable transcriptional regulator  ali model follow..  19  1GSTSYDDTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYHYFKSKEQFGQALLEDYFRVYLADMDQRFSAPGNARERLMSYWQKWLDNACPPCDEQRCLVVKLSAEVADLSESMRITLRDGSDGIIERLVGCLGQGRDDGSLA-PCDARHMASALYQLWLGASLLSKLHRSPGPLETAMQTTRSLLE...... 196
6 -75.2003knw_A mol:protein length:212 Putative transcriptional regulator (TetR/AcrR family)  ali model follow..  20  9.VKKSEAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTTETSARDKLMNYLQCWVKPATEQSWAESCLIVKMAAEVADLSEDMRLIMNDGVKRLIARMADLIRIGQQEGSIQTSVVPDVLAQVIYQMYLGAALLSKLYKHKAPLFQALESTKMMLDGCNHVQ 207
7 -74.4001sgm_A mol:protein length:191 Putative HTH-type transcriptional regulator yxaF  ali model follow..  23  1.MTSRGDSREKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHFFPNKEELAIEAVTYTGKIVEHLIQQSMDESSDPVEAIQLFIKKTASQFDNTESIKGIPVGLLASETALISEPLRTVCMKVFKSWEAVFARKLMENGFAEE-----EANQLGTLINSMIEGGIMLSLTNKDKTPLLLIAEQIPVLVRKK.... 190
8 -72.9002hyj_A mol:protein length:200 Putative tetR-family transcriptional regulator  ali model follow..  22  8..AEAQATRGRILGRAAEIASEEGLDGITIGRLAEELEMSKSGVHKHFGTKETLQISTLDKAFVDFWHRVVEPALAEPPGLRRLRAVCANSVGYLEEPLLPGGCLLTAALSEYDGRPGRVRDAVAEVWSRWREQLRADLTAAVDKGELPAGFDVEQALFEIVAAGLALNAAMQLQHDRTAADRARRAIERALAQS.... 200
9 -72.1002g7s_A mol:protein length:194 transcriptional regulator, TetR family  ali model follow..  19  3.MKNPQSKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQYRQEAEAGIAELEKNISDPLEQLRAYIGYWEGCIADAT-HPFCVCALLASEIPVLPETVVLEVRAHFRSLSDWLTAVLERGIAQGRLVLTGTARANAEIFMATVHGAMLSARAHGDAATFGAITRPMLERITA..... 194
10 -69.0003dpj_A mol:protein length:194 Transcription regulator, TetR family  ali model follow..  20  4..MVQAQTRDQIVAAADELFYRQGFAQTSFVDISAAVGISRGNFYYHFKTKDEILAEVIRLRLARTAQMLADWQGTGDSPRARIASFIDLMIMNRAKITRY-GCPVGSLCTELSKLDHAAQGQANGLFTLFRDWLQRQFAEA------GCTTEAPALAMHLLARSQGAATLAQSFHDEGFLRSEVADMHRWLDNTLPMT 193
11 -67.1003on4_A mol:protein length:191 Transcriptional regulator, TetR family  ali model follow..  22  6..MNISNTKERILAVAEALIQKDGYNAFSFKDIATAINIKTASIHYHFPSKEDLGVAVISWHTDKIAAVLSDISNNSSSAKEKIQKFFDAILTLTYNSENK-MCLGGMFASDFQSLPVSIQNQAKKFFELIIEWLKGVLETNGYDNE-----SSLSLAKQIISLVEGGLLLARLYGDETFLEGVRHFIDQTIK...... 191
12 -59.6002fd5_A mol:protein length:180 transcriptional regulator  ali model follow..  23  3..DKKTQTRARILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQSKDALMLEAFEQLLGKRRELLGELDPGLSGKERRALAAAFYLSRKHRDAQVDAGCPLPATLAEVARLPEGFREVLSRHVEIMVTSLAESP-------------EETDVALADLVLMIGGLALARALGPGELSDRVLRAAKQAVN...... 180
13 -59.2001ui5_A mol:protein length:215 A-factor receptor homolog  ali model follow..  19  4.QLRAEQTRATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGALYFHFAAKEDLAHAILEIQSRTSRRLAKDLDGRGYSSLEALMRLTFGMARLCV------QGPVLRAGLRLATAGVPVRPPLPHPFTEWREIATSRLLDAVRQSDVHQDIDVDSVAHTLVCSVVGTRVVGGTLEPAGREPRRLAEMWYILIRGMVPV 195
14 -53.9005xay_A mol:protein length:228 Gamma-butyrolactone receptor protein  ali model follow..  26  3.QERAAQTRRTIVAAAAAVFDELGYEATTIAEILKRSGVTKGALYFHFTSKEQLAQEVLTSQLRAVPPVEEQR--------LVLQQIIDETLLLAQLLSKGDPLVRGSVRLTVEPGAPRDGLDRRAPMQEWIGHGRDLLRRAEAGGELLPRLDVDAVARMLVGGFTGAQILSNILTGHADLLERVTDMHRHLMTSVAVP 192
15 -52.1003g7r_A mol:protein length:221 Putative transcriptional regulator  ali model follow..  19  25..RTPSEARARLLGTATRIFYAEGIHSVGIDRITAEAQVTRATLYRHFSGKDDLILAYLDQADRGIRAQVTAARGSSPAADGQVRAVARSIVDGIRSPGFR-GCAFLNAVAEYPDPAHPVHRAVLAHRQWFLDTVTELLAQVGDG-------DGVAAGRHLVMLRDGAMAAGCLFDPELVSETFLHGVEGVLRDVSEKT 213
16 -51.3002uxh_A mol:protein length:210 HTH-TYPE TRANSCRIPTIONAL REGULATOR TTGR  ali model follow..  22  7..EEAQETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFNNKAELVQALLDSLHETHDHLARASESEDEDPLGCMRKLLQVFNELVLDARTRRINEILHHKCEFTDDMCEIRQQRQSAVLDCHKGITLALANAVRRGQLPGELDAERAAVAMFAYVDGLIRRWLLLPDSVDLLGDVEKWVDTGLDMLRLS 205
17 -51.2002i10_A mol:protein length:202 Putative TetR transcriptional regulator  ali model follow..  19  7..RRRGFDDQVALQTAMELFWRQGYEGTSITDLTKALGINPPSLYAAFGSKRDLFEKTLDRYMCERTLQLEEAMVRP-TAHEAVLDFLTGRVEVFTAPGQPFGCMTVQAGLASGEPHHEIVDLLTAAREQMRQTVLDRFEKALADGDLPAGTDCTALARYVMAAVYGLSVEAASGAPREELTAAAILAAQVVPRAQMGS 202
18 -50.2004uds_A mol:protein length:214 MBDR REGULATOR  ali model follow..  18  9..EQRKASTENILGCALDLFVKNGYRATTIDMIAARAGLTKGAIYFYFKTKDAIMLMLLEEAEKYIVDPIDEYMANGPLADAKLVKFINMQALLGVTKP-----LLILVSIDFSGTGDDIEKRAKAIYRRMYGHVEQLIAQGQTEGVFRSDSGSDELASIVMAAHDGVLIEWYRRPNELTGKTLTKALRSVLLNGLIVD 205
19 -49.8003vib_A mol:protein length:210 MtrR  ali model follow..  18  6..TEALKTKEHLMLAALETFYRKGIARTSLNEIAQAAGVTRDALYWHFKNKEDLFDALFQRICDDIENCIAQDAADAEGSWTVFRHTLLHFFERLQSNDHYKFHNILFLKCEHTEQNAAVIAIARKHQAIWREKITAVLTEAVENQDLADDLDKETAVIFIKSTLDGLIWRWFSSGESFDLGKTAPRIIGIMMDNLENH 204
20 -49.8003jsj_A mol:protein length:190 Putative TetR-family transcriptional regulator  ali model follow..  23  1GMTTKQSPRERLLEAAAALTYRDGV-GIGVEALCKAAGVSKRSMYQLFESKDELLAASLKERSAAFVAKALPPADDGRSPRERILYVFERVESQAGAPDFQ-GCRYLAVQIELKDQAHPASRVAYQIKADLMAFFRSEAERGGAS-------DPDLLARQLILVFDGASARAGIGADNLTGLIVPTLTTLLDAADMH.. 190
21 -49.5002w53_A mol:protein length:219 REPRESSOR  ali model follow..  16  7..EDTQATREGILDAAEACFHEHGVARTTLEMIGARAGYTRGAVYWHFKNKSEVLAAIVERVHLPFMQELERTSDQRDTPVHDLRAVMIHSFIELSEDERLRKTMEIMLRSDASANTRVLTEMQQAGFRDALDRMERALRRARDLGQLREGADPKIAARMLHATVLGVLHGAMVEPELMDLKRDGMLALDMTLAAYVKD 204
22 -49.0002wui_A mol:protein length:210 TRANSCRIPTIONAL REGULATOR  ali model follow..  17  7..EESQKTRDGILDAAERVFLEKGVGTTAMADLADAAGVSRGAVYGHYKNKIEVCLAMCDRAFGQIEVPDENARVPALDILLRA--GMGFLRQCCEPGSVQRVLEILYLKCERSDENEPLLRRRELLEKQGQRFGLRQIRRAVERGELPARLDVELASIYLQSLWDGICGTLAWTERLR-PWNRAERMFRAGLDSLRSS 202
23 -48.8002qop_A mol:protein length:215 HTH-type transcriptional regulator acrR  ali model follow..  16  7..QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKPGDPLSVLREILIHVLESTVTEERRR--EIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKEARDYVAILLEMYLLC 205
24 -48.4003lhq_A mol:protein length:220 AcrAB operon repressor (TetR/AcrR family)  ali model follow..  17  10..QQALETRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYWHFKNKSDLFSEIWELSESNIGELEIEYQAKPDDPLSVLREILVHILEATVTEERRR--EIIFHKCEFVGEMVVVQQAQRSLCLESYDRIEQTLKHCINAKMLPENLLTRRAAILMRSFISGLMENWLFAPQSFDLKKEARAYVTILLEMYQLC 208
25 -48.3002g3b_A mol:protein length:208 putative TetR-family transcriptional regulator  ali model follow..  23  2.....SERRDAILKASATAIAQRGIRGLRVNDVAEVAGVSPGLLYYHFKDRIGLLEAALNYINDRARAYRSEGEGSGDSARDRLTRSLLGEIQ--DRPEVVENSLAWNELRASAVYEEALRDPLARTTAAWVSEIADAIVQAQATGEISRSLDPQPTAVTMTALVEG--LSGRWLCKEISTEDARSHLLGAIDVVMSEP 191
26 -48.2006ayi_A mol:protein length:199 HTH-type transcriptional regulator UidR  ali model follow..  17  10..TEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYHHFISKEALIQAIILQDQERALARFREPIEGIHFVDYMVESIVSLTHEAFGQRA------LVVEIMAEGMRNPQVAAMLKNKHMTITEFVAQRMRDAQQKGEISPDINTAMTSRLLLDLTYG-VLADIEAEDLAREASFAQGLRAMIGGILTAS 199
27 -48.1006ayh_A mol:protein length:201 TetR family transcriptional regulator  ali model follow..  23  9..TEPLPTRMRILRAARQCFAENGFHSTSMKTICKASDMSPGTLYHHFPSKEALIEAIILEDQERALTHFREPLEGVGLVDYLVESTIAVTREDYAQRAL-----VVEIMAE-GMRNPQVAEMLTNKYHTIIASLVARFNDAQAKGEIGADVDKEMAARLLLATTYG-VLSDSSSAENARHVSFATTLRTMLTGLLKCN 198
28 -47.8005gpa_A mol:protein length:195 Transcriptional regulator (TetR/AcrR family)  ali model follow..  15  3..KKKGPKYDQIIDAAVQVIAEHGYHQAQVSKIAKAAGVADGTIYLYFNNKEDVLISLFQEKMGRFVDKIRSQMNEATDVEEKLKILVNMHFKQLAADH-----LAIVTQLELRQSNTELALKINEVLKGYLNLLDELLMEGKEKGYFFQELDTRLARQMIFGTLDEVVTNWVMKDCKYDLTALVKPVHQLLLGGLRH. 194
29 -47.8004ac6_A mol:protein length:191 HTH-TYPE TRANSCRIPTIONAL REPRESSOR ACNR  ali model follow..  20  10..DKPTNSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHHFGDKENLFLALAREDAARMAEVVSEN------------GLVEVMRGMLEDPERYDWMSVRLEISKQLRTDPVFRAKWIDHQSVLDEAVRVRLSRNVDKGQMRTDVPIEVLHTFLETVLDGFISRLATGASTEGLSEVLDLVEGTVRK..... 189
30 -47.7003kz9_A mol:protein length:206 SmcR  ali model follow..  11  13..LSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLSDNIDLDLHAKENIANITNAMIELVVQDN------LKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHNPEDLANLFHGICYSLFVQANRTNNTAELSKLVSSYLDMLCIYKRE. 204
31 -47.6001vi0_A mol:protein length:206 transcriptional regulator  ali model follow..  15  2SLKQKRPKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFIERMEEDIKEKATAKEKLALVISKHFSLLAGDH-----LAIVTQLELRQSNLELRQKINEILKGYLNILDGILTEGIQSGEIKEGLDVRLARQMIFGTIDETVTTWVMNDQKYDLVALSNSVLELLVSGIHNK 196
32 -47.3003br0_B mol:protein length:194 HTH-type transcriptional regulator qacR  ali model follow..  14  2......NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKSEQIKAKTNREKFYLYNELSLTTEYYYPLQN---AIIEFYTEYYKTNSINEKMNKLQNKYIDAYHVIFKEGNLNGEWSIN-DVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIFLNGLSK.. 188
33 -47.0001rkt_A mol:protein length:205 protein yfiR  ali model follow..  16  8..EHKDKRQAEILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVYLYFSSTEEMFRRIIETGLDEGLRKLDK-SAEHQSVWASISSYLDELTEGLRDVADTLAPVQFEYLVT-AWRNEERRQYLEKRYDLFVERFSRLLQKGIDQGEFQPVQPLATIAKFFLNMNDGIIQNALYFDEEKDVSGLAESAKLYLKTVLQAD 203
34 -46.9001jt0_A mol:protein length:194 HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN QACA 5`REGION  ali model follow..  14  2......NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKAKTNREKFYLYNELSLTTEYYYPLQN---AIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWSI-NDVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIFLNGLSK.. 188
35 -46.8005l0x_A mol:protein length:223 Hemagglutinin/protease regulatory protein  ali model follow..  11  27..LSPQKRKLQLMEIALEVFAKRGIGRGDHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFLTDHIDLDLDVKTNLQTLCKEMVKLAMTDC------LKVWFEWSASTRDEVWPLFVSTNRTNQLLIRNMFMKAMERGELCEKHDVDNMASLFHGIFYSIFLQVNRLGEQEAVYKLVDSYLNML....... 212
36 -46.8003ang_C mol:protein length:204 Transcriptional repressor, TetR family  ali model follow..  15  5..YQKKRRRERIFRAAMELFRNRGFQETTATEIAKAAHVSRGTFFNYYPYKEAVLLDYGSQLLAGLREEVRRLLAQGREPVEVLRHLFRVLAEGTAREK------LLLPMFYELLNPDPVRARAAFEALPLGDLIAEILKPLREQGVLRQDFSLERMGRTLADLYFLSALRWAAYTPGRDLAEELEKNLRLLLEGMLVR 196
37 -46.7003br3_B mol:protein length:194 HTH-type transcriptional regulator qacR  ali model follow..  14  2......NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKSEQIKAKTNREKFYLYNELSLTTQYYYPLQN---AIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWSIN-DVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIFLNGLSK.. 188
38 -46.6005daj_A mol:protein length:212 NalD  ali model follow..  15  6..EDSEKTRTAILLAAEELFLEKGVSHTSLEQIARAAGVTRGAVYWHFQNKAHLFNEMLNQVRLPPEQLTERLSGDGSDPLRSLYDLCLEAVQSLTQEKKRRILTILMQRCEFTEELREAQERNNAFVQMFIELCEQLFARDECRVRLHPGMTPRIASRALHALILGLFNDWLRDPRLFDPDTDAEHLLEPMFRGLVRD 204
39 -46.6002f07_A mol:protein length:197 YvdT  ali model follow..  17  6..KQTSGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLYFSSKNALIPAIAENLLTHTLDQIKGRLHGDEDFWTVLDILIDETFLITERHKDIIVLCYSGLAID------HSMEKWETIYQPYYSWLEKIINKAIANHEVTEGINSKWTARTIINLVENTAERFYIGFEQDNVEVYKKEIFTFLKRSLGTA 197
40 -45.8004gct_A mol:protein length:196 Nucleoid occlusion factor SlmA  ali model follow..  18  4..NKKINRREEILQALAEMLSNEGASRITTAKLAKQVGVSEAALYRHFPSKTRMFEGLIEFIEESLMSRINRIFDEEKDTLNRIRLVMQLLLAFAERNP---GLTRILSGHALMFENERLRDRINQLFERIETSLRQILRERKLREGKSFPVDENILAAQLLGQVEGSLNRFVRSDFKYLPTANFDEYWALLSAQIK.. 196
41 -45.5003lwj_A mol:protein length:202 Putative TetR-family transcriptional regulator  ali model follow..  16  1GMKQNKERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYNYFVDKEDILKNLLEDFAKQIISSISEYYLVEKDLYERFIETKRLTMEVFAQNE------LSEIYSRVAGSSAPIDQCLKQFEDRLLEFYSRNIEYGIKKGVFK-NVPVSPIAHSILAIEKFSLYKWVVLKAITK-EEMIEMVLSFHKTLAV.. 195
42 -45.4005haw_A mol:protein length:196 Nucleoid occlusion factor SlmA  ali model follow..  17  4..QAKINRREEILQALAEMLSNEGASRITTAKLAKQVGVSEAALYRHFPSKTRMFEGLIEFIEESLMSRINRIFDEEKDTLNRIRLVMQLLLAFAERNP---GLTRILSGHALMFENERLRDRINQLFERIETSLRQILRERKLREGKSFPVDENILAAQLLGQVEGSLNRFVRSDFKYLPTANFDEYWALLSAQIK.. 196
43 -45.3003geu_A mol:protein length:189 Intercellular adhesion protein R  ali model follow..  15  1....SNAMKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNNIIMMNQNKSNYSIDALYQFLFEFIFDIEER-------YIRMYVQLSNTPEEFSGNIYGQIQDLNQSLSKEIAKFYDESKIKM--TKEDFQNLILLFLESWYLKASFSQKFGAVEESKSQFKDEVYSLLN.. 184
44 -45.1005k58_E mol:protein length:190 Nucleoid occlusion factor SlmA  ali model follow..  18  1.....RNRREEILQSALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTARLRLIVLLLLGFGERNP---GLTRILTGHALMFEQDRLQGRINQLFERIEAQLRQVMREKRMREGEGYTTDETLLASQILAFCEGMLSRFVRSEFKYRPTDDFDARWPLIAAQLQ.. 190
45 -45.1003crj_A mol:protein length:199 Transcription regulator  ali model follow..  17  10..RTFSDQTEEIMQATYRALREHGYADLTIQRIADEYGKSTAAVHYYYDTKDDLLAAFLDYLLERFVDSIHDV--ETTDPEARLNLLLDELLVKPQENPDLSVALLEMRSQ--APYKEAFSDRFRQNDEYVRYMLKAVINHGIDEGVFT-DVDAEHVTRSLLTIIDGARTRAVMLDDTEELETARQTASEYADAMLQ.. 199
46 -44.7005d18_A mol:protein length:216 TetR family transcriptional regulator  ali model follow..  20  10..QQGERSRESILDATERLMATKGYAATSISDIRDACGLAPSSIYWHFGSKEGVLAAMMERGAQRFFAAIPTWDEAHGPVEQRSERQLTELVSLQSQHP------LFYLLSMERSQDPAVAAVVRRVRNTAIARFRDSITHLLPSDIPKADLVVAELTAFAVALSDGVYFAGHLEPDTTDVERMYRRLRQALEALIPVL 206
47 -44.7005hsz_A mol:protein length:196 Nucleoid occlusion factor SlmA  ali model follow..  17  4.TAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTARLRLIVLLILGFGERNP---GLTRILTGHALMFEQDRLQGRINQLFERIEAQLRQVMREKKMREGEGYTLDETLLASQLLAFCEGMLSRFVRSEFKYRPTDDFDARWPLVAAQLQ.. 196
48 -44.7006azh_A mol:protein length:192 TetR family transcriptional regulator  ali model follow..  15  2..NAMNRTKKAIFEAAINVFATSGYNGSTVDEIASKANVAKGTLYYNFKSKEEIFNFVISKGLEIWHEKLTDIENLEDEPIEKLKKLFKMQFELLYENR------FFKMVMSQLWGKETRQDELRNKITEYIEGIERILKEAISKKQIR-ECDISLLAHSLFGSLISTSLYELSRDKEFNVNKVIDEITINILDGIVI. 191
49 -44.4003vuq_A mol:protein length:187 Transcriptional regulator (TetR/AcrR family)  ali model follow..  13  8..AGVKDKKRAILEATLAVLRERGLSGLKMEEVARRAEVGKGTIYLYFRDKRDLLKALVEERTWAFYREVEEVVRRKAPFFVRLEEVLRRRLAWVQEWR---------WAAVAREAMDDPTPWLKGLHEHYLRLLEELLRSGQSEGAVRTGLSPRATAAVIAAMGCTPSL---------EVEAYLEHLMEVLRKGVEP. 187
50 -44.3005vl9_A mol:protein length:192 Regulatory protein TetR  ali model follow..  18  1.MGYREERRETIMQAAMRVALDQGFTGMTVRNIATAAGVAAGQVHHHFTSSGELKSQAFIRVIREMMDLQR--LSRTAGWREQLFSALGSEDGRLEPY-----IRLWRQAQLLADSDPEIKSAYLLTMNLWHDEAVRIIRAGHAAGEFTLRDSAENIAWRLISLVCGLDGIYVLGMPEVDDAAFTRHLQHVIQLELFS. 192
51 -44.2002zcm_A mol:protein length:192 Biofilm operon icaABCD HTH-type negative transcriptional regulator icaR  ali model follow..  13  2.......MKDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVENCFNYFIDFMMRNHDDNYSIDGLYQFLFKFIFDVDERYI--------KLYVQLSSAPEALNSEIKHHLQEINTTLHDELIKYYDPTHIA--LDKEDFINMILMFLETWYFRASFSQKFGIIEDSKNRFKDQVYSLLN.. 181
52 -44.0002zcn_A mol:protein length:192 Biofilm operon icaABCD HTH-type negative transcriptional regulator icaR  ali model follow..  14  2.......MKDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVENCFNYFIDFLLRNHDDNYSIDGLYQFLFKFIFDVDERYI--------KLYVQLSSAPEALNSEIKHHLQEINTTLHDELIKYYDPTHIA--LDKEDFINLILLFLETWYFRASFSQKFGIIEDSKNRFKDQVYSLLN.. 181
53 -43.9004gck_A mol:protein length:212 Nucleoid occlusion factor SlmA  ali model follow..  17  20.TAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTARLRLIVLLILGFGERNP---GLTRILTGHALMFEQDRLQGRINQLFERIEVQLRQVMREKKMREGEGYTLDETLLASQLLAFCEGMLSRFVRSEFKYRPTDDFEARWPLVAAQLQ.. 212
54 -43.7003nxc_A mol:protein length:212 HTH-type protein slmA  ali model follow..  18  21..AKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTARLRLIVLLLLGFGERNP---GLTRILTGHALMFEQDRLQGRINQLFERIEAQLRQVLREKRMREGEGYATDETLLASQILAFCEGMLSRFVRSEFKYRPTDDFDARWPLIAAQLQ.. 212
55 -43.3002gen_A mol:protein length:197 probable transcriptional regulator  ali model follow..  20  1GHMGRSSRKDEILQAALACFSEHGVDATTIEMIRDRSGASIGSLYHHFGNKERIHGELYLAGIGQYAALLEAGFARARSAEETVRLLVTSYIDWVVANP---------LHSRGRVEAGELGERLRADNQAHFARIHAALAGYRAEGLFR-EMPDDCFASVVIGPAHDLARQWLAGRTRVALADCRELLAQVAWDSVRAA 195
56 -43.1002hyt_A mol:protein length:197 TetR-family transcriptional regulator  ali model follow..  20  1GMVRMEETRATLLATARKVFSERGYADTSMDDLTAQASLTRGALYHHFGDKKGLLAAVVEQIDAEMDERLQAISDTAEDDWEGFRCRCRAYLEMALEPEIQR----------LRDARAVLGGASPDSQRHCVESMQRLIDNLIRQGVVA-EADPQALASLIYGSLAEAAFWIAEGEDGNARLAQGVAALELLLRGLLVK 195
57 -43.1003ppb_A mol:protein length:195 putative tetR family transcription regulator  ali model follow..  15  1GMTSKRTKKQAILETALQLFVSQGFHGTSTATIAREAGVATGTLFHHFPSKEQLLEQLFLGVKQEFADAIQASVSSRGDLKQDAEQLWFAALTWAMANP------KQAFFQLYSMSPTVEQSVRDQAMHGILGFIAELIRQGQASGELA-EYPIELMQDNCHGQYLAATRYFVDHPERWQQAHERSASFALFWNAMAV. 194
58 -43.0003f0c_A mol:protein length:216 Transcriptional regulator  ali model follow..  13  6.IKNEDGKLELIINAAQKRFAHYGLCKTTMNEIASDVGMGKASLYYYFPDKETLFEAVIKKEQNVFFDEMDKILNSGIDATALLKKYVKLRSLHFRHL-------SKLRSDFFHNTKPVFAKAFESFKQKEVEIVAGIIQYGITTKEFKR-GNKHENAEFLVHLLLGVRMVKLKYKDYEDLDKNMCKVAGMFLKEIQTE 206
59 -43.0006el2_A mol:protein length:196 Transcriptional regulator TetR family  ali model follow..  16  9..EKGKESLNKILDASVELIADKGFLSTSINDITSKAGVAYGLFYFYFKSKHDILDEIIRQFNRNMRYYLKTYTQNLDSRIDVEKVGMKKFLEWMNENK--------KYYKIFIETQVHRPDIYKWHFMKLAERYTTGLSEAMRRGEII-NVDPELLSYVLIGIAHMLGKRYVLWSNSGLTLKQQRDLDLIIENMLTP. 195
60 -42.7004ich_A mol:protein length:311 Transcriptional regulator  ali model follow..  21  110..EPQSEARRRILETAWRLIARRGYHNVRIHDIASELGTSNATIHYHFPSKKDILLEALRRNVKLAFDRQVAELHTIADARERLVRLVELQLPTPGLL--RDEWSVWLQVWTESTLNPKIRDLYNDAYDRWYQTIAMTIRTGQKQGVFR-DQDADELATRLSALIDGLGIQVLTGKRGCSVDHMRQHLNDFIEHNIVER 303
61 -42.5004me9_A mol:protein length:189 Transcriptional regulator, TetR family  ali model follow..  19  1GMAK--NKQEDIFDAAMQLFAERGYDGTTIPMIAEKAKVGAGTIYRYFENKEALVNSLFSKSMLQLSEMIKTDFPVEANIREQFSHTYNRLFEFARNN------VDAFLFTNSHCDSYFLDEQSKKIFDDFIGFFMNIIEDGIVKGLLR-PLPPVALIIIVYQPLEK-LIKVIATGQLEYSKELVKELEESSWNAIR.. 187
62 -42.4003b81_A mol:protein length:203 Transcriptional regulator, AcrR family  ali model follow..  15  1GMSRFNNKRTELANKIWDIFIANGYENTTLAFIINKLGISKGALYHYFSSKEECADAAIENRVAFFSNEVLKESEEGLNSIERLKKILLAGIKITSVNE-------QVKEINSPSNKIFHQKLMVAIIKYFAPIYADIISQGNEEGVFKVK-YPLETAEIILTLSHFYLDEDLFKWKKEDMSLKLTAFKETLIKIL... 192
63 -42.3002ibd_A mol:protein length:204 Possible transcriptional regulator  ali model follow..  18  10..SGKSGRRTELLDIAATLFAERGLRATTVRDIADAAGILSGSLYHHFDSKESMVDEILRGFLDDLFGKYREIVASGLDSRATLEALVTTSYEAIDASHSAVAIYQDEVKH----VANERFTYLSELNTEFRELWMGVLEAGVKDGSFRSDIDVELAFRFLRDTAWVAVRWYRPGGSVTVDTVAKQYLSIVLDGLASP. 202
64 -42.3004mxm_A mol:protein length:203 Transcriptional regulator I2  ali model follow..  17  16..TDPESARGKLLQTAAHLFRNKGFERTTVRDLASAVGIQSGSIFHHFKSKDEILRAVMEETIHYNTAMMRASLEEASTVRERVLALIRCELQSIMGGSGEA---MAVLVYEWRSLSAEGQAHVLALRDVYEQIWLQVLGEAKAAGYIRG--DVFITRRFLTGALSWTTTWFRAQGSLTLEELAEEALLMVLKS..... 202
65 -42.2001zkg_A mol:protein length:212 transcriptional regulator, TetR family  ali model follow..  15  5..KIVLSKRDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYMSVTEKLQKEFENFLMRNRDIFDFMERWIEKKLEYSASHP------EADFLITLVSVDEGLRKRILLDLEKSQRVFFDFVREKLKDLDLAEDVTEEIALKFLMWFFSGFEEVELLKRDMNTLVEEVKVMLRILKKGMT.. 205
66 -42.2005eyr_A mol:protein length:228 EthR  ali model follow..  14  24..PSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAEADTDRENMWRTGINVFFETFGSHK-----AVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSPEARVLDTLVHIWVTSIYGE 218
67 -41.9004w1u_A mol:protein length:204 HTH-type transcriptional repressor KstR2  ali model follow..  17  10..GQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQR----ASQPRFSYIEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYLAIVLGGITKEG 203
68 -41.9004mo7_A mol:protein length:212 Transcriptional regulator I2  ali model follow..  17  25..TDPESARGKLLQTAAHLFRNKGFERTTVRDLASAVGIQSGSIFHHFKSKDEILRAVMEETIHYNTAMMRASLEEASTVRERVLALIRCELQSIMGGSGEA---MAVLVYEWRSLSAEGQAHVLALRDVYEQIWLQVLGEAKAAGYIRG--DVFITRRFLTGALSWTTTWFRAQGSLTLEELAEEALLMVLKS..... 211
69 -41.8002iai_A mol:protein length:230 Putative transcriptional regulator SCO3833  ali model follow..  15  20..KRDTYTPETLLSVAVQVFIERGYDGTSMEHLSKAAGISKSSIYHHVTGKEELLRRAVSRALDELFGILDEEHARVGTAAERLEYVVRRMVEVLMAEL------VTLLLRVRGNTGT--ERWALERRREFDHRVAALLKDAAAEGDVRADVEVRLATRLVFGMIEGPDGRSDASGASGVSGAGEREVVDAVARLV... 216
70 -41.7002gfn_A mol:protein length:209 HTH-type transcriptional regulator pksA related protein  ali model follow..  18  1.VPKHDERRRALADAVLALIAREGISAVTTRAVAEESGWSTGVLNHYFGSRHELLLAALRRAGDIQGDRYRTILDEGAGPIEKLRNITASILPLDERRLAMTRVFLFFYAE--GAAEETARGEIAAFLARWRGVVRESVVAAQREGTVSTDLDADAVTVALVALTDGLALQAILDPVVMKAISAEDAAARCVDAAVRRT 200
71 -41.6005c4y_A mol:protein length:184 Putative transcription regulator Lmo0852  ali model follow..  15  2.......TKKLIKEVALTLFAEKGYDGTALSEIAKAVGIKTPSLYAHFASKEALFLEVYQDSIQMELTELGRVAEREDLVGEEKLQSIFFVATDFSSNP------KKFFQRAVFYPPKSLFQELKEETKTYEQLTNRILRETLEKIVSEE--ALVRWMHVFYALLDG-LSVEHGIYDETEFELRRKSAWAVLASLLK.. 184
72 -41.6003pas_A mol:protein length:195 TetR family transcription regulator  ali model follow..  18  1GMRRDDSKRIAFLEATVREVADHGFSATSVGKIAKAAGLSPATLYIYYEDKEQLLLATFYYVSDQVIDAALDSFSRGKDLREGLRRQWHTLFRIGLER------PELFRYHETFTHSAWMTPEIQARNESRAANLLNAVDQGKQSGLIK-PVPFPLLETFMFRPIYHLVLQGSFEGTDEHIELAFNMAWDAVADRRNT. 195
73 -41.4003dcf_A mol:protein length:218 transcriptional regulator of the TetR/AcrR family  ali model follow..  22  27..RTGNDRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIYYYFKSKEDVLFAIVNSIVDEALERFHAIAAGPGSPGERIHALLVEHTRTILRNLDA----NTLFYNERGLLSPEREREMRKREREYTEIMQRLYAEGVATGELL-DVDPTVATATLLGAAIWTYRWYDPEGRLSADEVVEQITRLLLNGYRRPA 218
74 -41.2003he0_A mol:protein length:196 Transcriptional regulator, TetR family  ali model follow..  16  7..NPAVDKRDQILAAAEQLIAESGFQGLSMQKLANEAGVAAGTIYRYFSDKEHLLEEVRLNVAKRIASAVQAGVNDDMPLKERYRTMWLNIWNLAGSNL------AISNRVQYDSLPCTTRNKTWELERKMFAQVDRLFNQGKEEGVFK-PLDNEVLSGLSFEASVALAALGFYQLDDDALEAAIEASWDAIIKH.... 196
75 -41.1003g1l_A mol:protein length:256 TRANSCRIPTIONAL REGULATORY REPRESSOR PROTEIN (TETR-FAMILY) ETHR  ali model follow..  14  34..PSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAEADTDRENMWRTGINVFFETFGSHK-----AVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSPEARVLDTLVHIWVTSIYGE 228
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.