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Query: 3qq6_A mol:protein length:78 HTH-type transcriptional regulator sinR, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GSSMIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETELast
1 -45.4003qq6_A mol:protein length:78 HTH-type transcriptional regulator sinR  ali model  100  1GSSMIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETE 72
2 -36.2003b7h_A mol:protein length:78 Prophage Lp1 protein 11  ali model follow..  19  5.GEFVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLGISVHDFFDFPPYNE 75
3 -35.4002b5a_A mol:protein length:77 C.BclI  ali model follow..  33  9..RKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDR-NISLINIHKICAALDIPASTFFRKMEEEN 77
4 -35.3001b0n_A mol:protein length:111 PROTEIN (SINR PROTEIN)  ali model follow..  100  1...MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETE 69
5 -34.5001y7y_A mol:protein length:74 C.AhdI  ali model follow..  32  12..VKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQR-NVSLVNILKLATALDIEPRELF....... 73
6 -33.8004i6u_A mol:protein length:82 Regulatory protein  ali model follow..  32  10..SKVSFVIKKIRLEKGMTQEDLAYKSNLDRTFISGIERNSR-NLTIKSLELIMKGLEVSDVVFFEMLIKE. 77
7 -33.6004ia8_A mol:protein length:82 Regulatory protein  ali model follow..  32  10..SKVSFVIKKIRLEKGMTQEDLAYKSNLDRTAISGIERNSR-NLTIKSLELIMKGLEVSDVVFFEMLIKE. 77
8 -33.6004fn3_A mol:protein length:82 Regulatory protein  ali model follow..  33  10..SKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSR-NLTIKALELIMKGLEVSDVVFFEMLIKE. 77
9 -33.6004f8d_A mol:protein length:82 Regulatory protein  ali model follow..  33  10..SKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSA-NLTIKSLELIMKGLEVSDVVFFEMLIKE. 77
10 -33.5004i6t_A mol:protein length:82 Regulatory protein  ali model follow..  33  10..SKVSFVIKKIRLEKGMTQEDLAYKSNLDRAYISGIERNSR-NLTIKSLELIMKGLEVSDVVFFEMLIKE. 77
11 -32.9003g5g_A mol:protein length:99 Regulatory protein  ali model follow..  33  21..SKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSR-NLTIKSLELIMKGLEVSDVVFFEMLIKE. 88
12 -32.4003fya_A mol:protein length:99 Regulatory protein  ali model follow..  33  21..SKVSFVIKKIRLEKGMTQEDLAYKSNLDATYISGIERNSR-NLTIKSLELIMKGLEVSDVVFFEMLIKE. 88
13 -32.1003vk0_A mol:protein length:114 Transcriptional regulator  ali model follow..  30  20..AVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRW-NIALSNIEKMAAALGVAAYQLLLPPQERL 88
14 -31.8002ofy_A mol:protein length:86 Putative XRE-family transcriptional regulator  ali model follow..  21  14.GQRLGELLRSAR--GDMSMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVAAVVTFGP 82
15 -31.1002ewt_A mol:protein length:71 putative DNA-binding protein  ali model follow..  25  7..KQLGAKLRAIRTQQGLSLHGVEEKSQWKAVVVGSYERGDR-AVTVQRLAELADFYGVPVQELL....... 70
16 -30.9005woq_A mol:protein length:120 Transcriptional regulator ClgR  ali model follow..  28  8.REVIGDVLRNARTDQGRTLREVSDAARVSLGYLSEVERG-RKEASSELLSAICDALDVPLSRVLTDAGES. 76
17 -30.9003f51_A mol:protein length:117 Clp gene regulator (ClgR)  ali model follow..  33  26.REALGAALRSFRADKGVTLRELAEASRVSPGYLSELERG-RKEVSSELLASVCHALGASVADVLIEAAGS. 94
18 -30.7004z5h_A mol:protein length:72 Antitoxin HipB  ali model follow..  23  9..TQLANAMKLVRQQNGWTQAELAKKIGIKQATISNFENN-PDNTTLTTFFKILQSLELSMTLCDAK..... 72
19 -30.2001zz6_A mol:protein length:198 Hydroxypropylphosphonic Acid Epoxidase  ali model follow..  16  8.STGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGALTPPAGNDL 78
20 -29.6003rzz_A mol:protein length:446 Hydroxyethylphoshphonate Dioxygenase (PhpD)  ali model follow..  14  5..RIDPFKLAHWMNARKYTAAQTADLAGLPLDDLRRLLGDEANEPDPAAATALAEALSVEPSQLAADAHRNL 74
21 -29.1003ivp_A mol:protein length:126 Putative transposon-related DNA-binding protein  ali model follow..  25  9DFRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENK-GQHPSLQVLYDLVSLLNVSVDEFFLPASSQV 79
22 -28.8002xiu_A mol:protein length:66 CYLR2  ali model follow..  31  1...MIINNLKLIREKKKISQSELAALLEVSRQTINGIEKN-KYNPSLQLALKIAYYLNCPLEDIFQWQPE.. 66
23 -28.8001utx_A mol:protein length:66 CYLR2  ali model follow..  31  1...MIINNLKLIREKKKISQSELAALLEVSRQTINGIEKN-KYNPSLQLALKIAYYLNTPLEDIFQWQPE.. 66
24 -28.7001y9q_A mol:protein length:192 transcriptional regulator, HTH_3 family  ali model follow..  32  9.KSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERG-ESSPTIATLWKIASGLEASFSAFFANDPQ.. 76
25 -28.6002wiu_B mol:protein length:88 HTH-TYPE TRANSCRIPTIONAL REGULATOR HIPB  ali model follow..  24  11..TQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN-PDNTTLTTFFKILQSLELSMTLCDAKNASPE 79
26 -28.3004pu3_D mol:protein length:118 Toxin-antitoxin system antidote transcriptional repressor Xre family  ali model follow..  22  40NQQSLGLLIKERRKSAALTQDVAAMLCGVTKKTLIRVEKG--EDVYISTVFKILDGLGIDIVSAQTSDTETN 109
27 -28.2003kxa_A mol:protein length:141 Putative uncharacterized protein  ali model follow..  29  61..KAGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQ-SLQDKTVQKLANALGVSPLEVRAAFERR. 128
28 -27.4005k98_B mol:protein length:91 Antitoxin HipB  ali model follow..  24  14..TQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN-PDNTTLTTFFKILQSLELSMTLCDTKNASPE 82
29 -27.4003f6w_A mol:protein length:83 XRE-family like protein  ali model follow..  16  13..QALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAER-RLDVIEFMDFCRGIGTDPYALLSKLEAM. 80
30 -27.4006b9s_A mol:protein length:457 Methylphosphonate synthase  ali model follow..  14  13.LIRSGNNFLGILNDIKRRPEDAANELGVSIEEINSIISG-KQKISPSLIEKAVNIWPVNERDFYIVSDDCS 82
31 -27.0001per_L mol:protein length:69 PROTEIN (434 REPRESSOR)  ali model follow..  28  2....ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENG--KTKRPRFLPELASALGVSVDWLLNGTSDSN 67
32 -26.9002k9q_A mol:protein length:77 uncharacterized protein  ali model follow..  19  3....LSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQS-ETAPVVVKYIAFLRSKGVDLNALFDRIIVNK 69
33 -26.7006b9r_A mol:protein length:450 Hydroxyethylphosphonate dioxygenase  ali model follow..  21  234TPGDHGAMLRSVMAARLTTVTELADRSGLKTDRVAALCRT-PARAEWPELSALAEALGVSVRELLVPHTTTE 304
34 -26.7005uk3_A mol:protein length:176 Uncharacterized protein  ali model follow..  16  16ARQIMSNQFIKAKESKGLTYQQMAQLLSVNKVWLTSVLHG-QNCCDIQLAHRICDTLGISHEYANELTSIPL 86
35 -26.6001adr_A mol:protein length:76 P22 C2 REPRESSOR  ali model follow..  26  2NTQLMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERS-ETEPNGENLLALSKALQCSPDYLLKGDLSQT 72
36 -26.4003omt_A mol:protein length:73 uncharacterized protein  ali model follow..  26  5TERKIFNRLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTN-DVQPSLETLFDIAEALNVDVRELIVSTKR.. 73
37 -26.3001sq8_A mol:protein length:64 dh434  ali model follow..  31  2...LMGERIRARRIQLGLNQAELAQKVGVDQQAIEQLENG--KAKRPRFLPELARALGVAVDWLLN...... 62
38 -26.0001zug_A mol:protein length:71 PHAGE 434 CRO PROTEIN  ali model follow..  23  2..QTLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAG--VTKRPRFLFEIAMALNCDPVWLQYGTKRGK 69
39 -26.0003bs3_A mol:protein length:76 Putative DNA-binding protein  ali model follow..  30  7NQQMMLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSN-KSQPSLDMLVKVAELLNVDPRQLINGKIK.. 75
40 -25.8002r63_A mol:protein length:63 REPRESSOR PROTEIN FROM BACTERIOPHAGE 434  ali model follow..  30  2....ISSRVKSKMIQLGLNQAELAQKVGTTQQSIEQLENG--KTKRPRFLPELASALGVSVDWLL....... 60
41 -25.8002ef8_A mol:protein length:84 Putative transcription factor  ali model follow..  26  9..RCLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFER-RLDALELFELLEVVASRLGLPMD...... 71
42 -25.4003lfp_A mol:protein length:98 Csp231I C protein  ali model follow..  22  1...MLIRRLKDARLRAGISQEKLGVLAGIDEARMNQYEKGKH-APDFEMANRLAKVLKIPVSYLYTPEDD.. 70
43 -25.0002mez_A mol:protein length:106 Multiprotein Bridging Factor (MBP-like)  ali model follow..  25  11....YYKIIKTAREQLGISQQQLAQKLKVSENIVKRFESG-KLKPTISQARQLEKILGIKLVTPLENNEESE 77
44 -24.8004o8b_A mol:protein length:122 Uncharacterized protein  ali model follow..  28  1...MLGTRLKAARIRAGYSQKQLGMLVGMDSARMNQYERERHS-PNMRTSEQLAMVLQVPMAYLYCPEDE.. 70
45 -24.2005j2y_A mol:protein length:80 Regulatory protein  ali model follow..  17  12....MAFRAKATRTARRESQETFWSRFGISQSCGSRFENGENLPFPIYLLLHFYIEGQITDRQLADLRGKIR 79
46 -24.2001x57_A mol:protein length:91 Endothelial differentiation-related factor 1  ali model follow..  22  14....VGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESG-RAIPNNQVLGKIERAIGLKLRGKDIGKPIEK 80
47 -24.1003mlf_A mol:protein length:111 transcriptional regulator  ali model follow..  17  18....AMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKD-STNIKDSLLSKYMSAFNVKYDDIFLGNEYEN 84
48 -24.1004y42_A mol:protein length:156 Cyanate hydratase  ali model follow..  11  10PRETLTDTIMMAKIRKNLTFEAINQGTGLSLAFVTAALLG-QHPLPEQAARVVAEKLDLDEDAIRLLQTIPL 80
49 -23.9003eus_A mol:protein length:86 DNA-binding protein  ali model follow..  21  13..VYLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRER-RLDVIEFAKWMAACEG............. 68
50 -23.8001rio_A mol:protein length:98 Repressor protein CI  ali model follow..  15  16.ARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNG-INALNAYNAALLAKILKVSVEEFSPSIARE. 84
51 -23.8005u55_A mol:protein length:190 (S)-2-hydroxypropylphosphonic acid epoxidase  ali model follow..  9  2.......DVRTLAV-GKAHLEALLATRKMTLEHLQDVRHDATQVDGLEHLQNVAQYLAIPLSEFFVGQTQSD 67
52 -23.2002l49_A mol:protein length:99 C protein  ali model follow..  22  2.SNTISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESG-RSTPPTDVMMNILQTPQFTKYTLWFMTNQIA 71
53 -23.0002p5t_A mol:protein length:158 Putative transcriptional regulator PezA  ali model follow..  25  1...MIGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENG-TSSVSTELIDIICQKFNVSYVDIVGEDKMLN 68
54 -23.0003kz3_A mol:protein length:80 Repressor protein CI  ali model follow..  15  10.ARRLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNG-INALNAYNAALLAKILKVSVEEFSPSIARE. 78
55 -22.9005y69_A mol:protein length:151 chain A  ali model follow..  18  2..SMTIKLLDEFLKKHDLTRYQLSKLTGISQNTLKDQNEKPLNKYTVSILRSLSMISGLSVSDVLFELEDIE 71
56 -22.9005a7l_A mol:protein length:80 CI  ali model follow..  18  2.QTDTSNRLKQIMAERNLKQVDILNLSKLSKSTLSQYVNS-VQSPDQNRIYLLAKTLGVSEAWLMGFDVP.. 78
57 -22.8005fd4_A mol:protein length:324 ComR  ali model follow..  15  21NDKEFGQRVRQLRESASMTREQFCDELELSVRQLTRIEAG-ASKPTFSKIQYIATRLGMGLYELMPDYVSLP 92
58 -22.8003op9_A mol:protein length:114 Pli0006 protein  ali model follow..  19  10....FAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSG-ETKPDIEKLIRLATYFHLSIDELVGYVQEDK 76
59 -22.7002kpj_A mol:protein length:94 SOS-response transcriptional repressor, LexA  ali model follow..  11  6QKAIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKG-IAIPRMGKVQALADYFNINKSDLIEDKKLNI 76
60 -22.5002qfc_A mol:protein length:293 PlcR protein  ali model follow..  23  4..EKLGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESG-AVYPSMDILQGIAAKLQIPIIHFYEVLIYSD 71
61 -22.2004ghj_A mol:protein length:101 Probable transcriptional regulator  ali model follow..  24  29..EEIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAEKG-KVQLDIMIAILMALDLTEQIDLFIPKQE... 94
62 -22.1003zhm_A mol:protein length:79 CI  ali model follow..  20  1.KTDTSNRLKQIMAERNLKQVDILNLSKLSKSTLSQYVNS-VQSPDQNRIYLLAKTLGVSEAWLM....... 72
63 -22.1001lli_A mol:protein length:92 PROTEIN (LAMBDA REPRESSOR)  ali model follow..  17  15.ARRLKAIYEKKKNELGLSQESLADKLGMGQSGIGALFNG-INALNAYNAALLAKILKVSVEEFSPSIARE. 83
64 -22.1005jub_A mol:protein length:310 Transcriptional regulator  ali model follow..  29  4.KDSIGLRIKTERERQQMSREVLCLGAELTVRQLIRIEKG-ESLPSLDRLSYIAKRLGKSMTELLDQDNITI 74
65 -22.0001dw9_A mol:protein length:156 CYANATE LYASE  ali model follow..  18  10IRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLG-QQALPADAARLVGAKLDLDEDSILLLQMIPL 80
66 -22.0003zhi_A mol:protein length:83 CI  ali model follow..  20  3.KTDTSNRLKQIMAERNLKQVDILNLSKLSKSTLSAYVAS-VQSPDQNRIYLLAKTLGVSEAWLM....... 74
67 -20.3002jvl_A mol:protein length:107 TrMBF1  ali model follow..  25  35....VGKAIEQGRQEPTMTQAELGKEIGETAATVASYERG-TATPDQNILSKMERVLNVKLRGANIGAPRLG 103
68 -19.9004yv6_A mol:protein length:284 Transcriptional regulator  ali model follow..  23  2.DKELGKTLRRLRQGKQVSISSLADEH-LSKSQISRFERG-ESEISCSRLLNLLDKLNITIDEFVSTHSKTH 70
69 -19.8002a6c_A mol:protein length:83 Helix-turn-helix motif  ali model follow..  15  13....LLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGLKVEINIKDA.... 76
70 -19.2002aw6_A mol:protein length:317 PrgX  ali model follow..  27  4....IGSVLKQIRQELNYHQIDLYSGI-MSKSVYIKVEAD-SRPISVEELSKFSERLGVNFFEILNRAGMNT 69
71 -19.0005v5t_A mol:protein length:306 Conserved domain protein  ali model follow..  18  6EYRPLGEEIERIRKGKNIPLRVFDE-NGVSSRSYQRFVQG-NSELRISDLAIIVEILSISPMEMTEKLTPMS 75
72 -18.9004ryk_A mol:protein length:306 Lmo0325 protein  ali model follow..  16  2..GSYGELIREIRLSKGLTQKEVYTGI-ISRSYAIGFEKG-KHEITLSLFEEILKRIMVPLDEFFFIYRDFS 69
73 -18.7002o38_A mol:protein length:120 Hypothetical protein  ali model follow..  14  41....LAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNALDQDVEIVIRKKPRSR 108
74 -17.3003tyr_A mol:protein length:88 Transcriptional regulator  ali model follow..  20  21......NKLWKLLIDRDMKKGELREAVGVSKSTFAKLGKNE--NVSLTVLLAICEYLNCDFGDIIEALPE.. 82
75 -17.0004yba_A mol:protein length:99 Regulatory protein C  ali model follow..  21  9...MTPEICKASRALVNLTQKELALMAGIATPTIADFERG-ARKPHGNNLRSIIIAFENKGLDFVEEGG... 73
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.