current user: public
If you have questions about the server, please let us know.

Query: 3rce_A mol:protein length:724 Oligosaccharide transferase to N-glycosylate proteins, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .  560    .  570    .  580    .  590    .  600    .  610    .  620    .  630    .  640    .  650    .  660    .  670    .  680    .  690    .  700    .  710
# Score Template Links and tools%idFirst MELQQNFTDNNSIKYTCILILIAFAFSVLCRLYWVAWASEFYEFFFNDQLMITTNDGYAFAEGARDMIAGFHQPNDLSYFGSSLSTLTYWLYSILPFSFESIILYMSTFFASLIVVPIILIAREYKLTTYGFIAALLGSIANSYYNRTMSGYYDTDMLVLVLPMLILLTFIRLTINKDIFTLLLSPIFIMIYLWWYPSSYSLNFAMIGLFGLYTLVFHRKEKIFYLAIALMIIALSMLAWQYKLALIVLLFAIFAFKEEKINFYMIWALIFISISILHLSGGLDPVLYQLKFYVFKASDVQNLKDAAFMYFNVNETIMEVNTIDPEVFMQRISSSVLVFILSFIGFILLCKDHKSMLLALPMLALGFMALRAGLRFTIYAVPVMALGFGYFLYAFFNFLEKKQIKLSLRNKNILLILIAFFSISPALMHIYYYKSSTVFTSYEASILNDLKNKAQREDYVVAWWDYGYPIRYYSDVKTLIDGGKHLGKDNFFSSFVLSKEQIPAANMARLSVEYTEKSFKENYPDVLKAMVKDYNQTSAKDFLESLNDKNFKFDTNKTRDVYIYMPYRMLRIMPVVAQFANTNPDNGEQEKSLFFSQANAIAQDKTTGSVMLDNGVEIINDFRALKVEGASIPLKAFVDIESITNGKFYYNEIDSKAQIYLLFLREYKSFVILDESLYNSAYIQMFLLNQYDQDLFEQVTNDTRAKIYRLKREFLast
1 -163.0003rce_A mol:protein length:724 Oligosaccharide transferase to N-glycosylate proteins  ali model  100  1MELQQNFTDNNSIKYTCILILIAFAFSVLCRLYWVAWASEFYEFFFNDQLMITTNDGYAFAEGARDMIAGFHQPNDLSYFGSSLSTLTYWLYSILPFSFESIILYMSTFFASLIVVPIILIAREYKLTTYGFIAALLGSIANSYYNRTMSGYYDTDMLVLVLPMLILLTFIRLTINKDIFTLLLSPIFIMIYLWWYPSSYSLNFAMIGLFGLYTLVFHRKEKIFYLAIALMIIALSMLAWQYKLALIVLLFAIFAFKEEKINFYMIWALIFISISILHLSGGLDPVLYQLKFYVFKASDVQNLKDAAFMYFNVNETIMEVNTIDPEVFMQRISSSVLVFILSFIGFILLCKDHKSMLLALPMLALGFMALRAGLRFTIYAVPVMALGFGYFLYAFFNFLEKKQIKLSLRNKNILLILIAFFSISPALMHIYYYKSSTVFTSYEASILNDLKNKAQREDYVVAWWDYGYPIRYYSDVKTLIDGGKHLGKDNFFSSFVLSKEQIPAANMARLSVEYTEKSFKENYPDVLKAMVKDYNQTSAKDFLESLNDKNFKFDTNKTRDVYIYMPYRMLRIMPVVAQFANTNPDNGEQEKSLFFSQANAIAQDKTTGSVMLDNGVEIINDFRALKVEGASIPLKAFVDIESITNGKFYYNEIDSKAQIYLLFLREYKSFVILDESLYNSAYIQMFLLNQYDQDLFEQVTNDTRAKIYRLKREF 714
2 -159.0005ogl_A mol:protein length:713 Undecaprenyl-diphosphooligosaccharide--protein glycotransferase  ali model follow..  96  1MELQQNFTDNNSIKYTAILILIAFAFSVLARLYWVAWASEFYEFFFNDQLMITTNDGYAFAEGARDMIAGFHQPNDLSYFGSSLSTLTYWLYSILPFSFESIILYMSTFFASLIVVPIILIAREYKLTTYGFIAALLGSIANSYYNRTMSGYYDTDMLVLVLPMLILLTFIRLTINKDIFTLLLSPVFIMIYLWWYPSSYSLNFAMIGLFGLYTLVFHRKEKIFYLTIALMIIALSMLAWQYKLALIVLLFAIFAFKEEKINFYMIWALIFISILILHLSGGLDPVLYQLKFYVFKASDVQNLKDAAFMYFNVNETIMEVNTIDPEVFMQRISSSVLVFILSFIGFILLLKDHKSMLLALPMLALGFMALRAGLRFTIYAVPVMALGFGYFLYAFFNFLEKKQIKLSLRNKNILLILIAFFSISPALMHIYYYKSSTVFTSYEASILNDLKNKAQREDYVVAWWDYGYPIRYYSDVKTLIDGGKHLGKDNFFSSFVLSKEQIPAANMARLSVEYTEKSFKENYPDVLKAMVKDYQKTSAKDFLESLNDPNFKIDTPKTRDVYIYMPYRMLRIMPVVAQFANTNPDNGEQEKSLFFSQANPLDQDKKQGSITLDNGVEISNDYRSLKIEGNSIPLKAFVDIESITNGKFYYNEIDSKAQIYLLYLREYKSYVILDESLYNSSYIQMFLLNQYDQDLFEQITNDTRAKIYRLKRE. 713
3 -85.2006c26_A mol:protein length:718 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3  ali model follow..  12  1MG-RSCVLSVFQTILKLVIFVAIFGAAISSRLFAVI----------KFESIIHEFDPWFNYRATKYLVNGRVTGGTLYPGLMTTSAFIWHALRNLPIDIRNVCVLFAPLFSGVTAWATYEFTKEIKDASAGLLAAGFIAIVPGYISRSVAGSYDNEAIAITLLMVTFMFWIKAQKTGSIMHATCAALFYFYMVSAWGGY-VFITNLIPLHVFLLILMGRYSSKLYSAYTTWYAIGTVASMQIPLIQIVAFGDFVKGQISTAKFKVIMMVSLFLILVLGVVGLSALTYMGLIAPWTGRFYSLWDTNYAKIHIPIIASVSEHQPVSWPAFFFDTHFLIWLFPAGV--FLLFLDLKDEHVFVIAYSVLCSYFAGVMVRLMLTLTPVICVSAAVALSKIFDIYKPAALLAKLIVSGSFIFYLYLFVFHSTWVTRTAYSSPLALIDDFREAYYWLRMNSDEDSKVAAWWDYGYQIGGMADRTTLVDNNTWNNTHIAIVGKAMASPEEKSYEILKEHDVD-----------------------------------------------YVLVIFGGLNKFLWMIRISEGIWPEEIKERDFYTAEGEYRVDARASETM--------------------------------------------RNSLLYKMSYKDFPQLFNGGQATDRVRQQMITPLDVPPLDYFDEVFTSENVRIYQLKKD. 685
4 -81.9006ftg_5 mol:protein length:705 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A  ali model follow..  11  4LGFLRLSYEKQDTLLKLLILSMAAVLSFSTRLFAVL----------RFESVIHEFDPYFNYRTTRFLAEGRIIGGTLYPGLMITSAAIYHVLHFFHIDIRNVCVFLAPLFSSFTTIVTYHLTKELKDAGAGLLAAAMIAVVPGYISRSVAGSYDNEGIAIFCMLLTYYMWIKAVKTGSIYWAAKCALAYFYMVSSWGG-YVFLINLIPLHVLVLMLTGRFSHRIYVAYCTVYCLGTILSMQISLCQIHAFVDYLRSKLNPQQFEVLFRSVISLVGFVLLTVGALLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSYYFDLQLLVFMFPVGL--YYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGIGVSQVLSTYYPIKNEVASGMILVMAFFLITYTFHSTWVTSEAYSSPRIIFDDFREAYYWLRHNTPEDAKVMSWWDYGYQITAMANRTILVDNNTWNNTHISRVGQAMASTEEKAYEIMRELDVS-----------------------------------------------YVLVIFGGINKFLWMVRIGGSTDTGKHIKEHDYYTPTGEFRVDREGSPVLLNCLMY------------------------------------------MCYYRFGQVYTEAKRPPGFDRVRNAEIGNKDFELDVLEEAYTTEHVRIYKVKD.. 696
5 -72.4003aag_A mol:protein length:291 General glycosylation pathway protein  ali model follow..  52  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................PLGSKAPTVFSQNEASLLNQLKNIANREDYVVTWWDYGYPVRYYSDVKTLVDGGKHLGKDNFFPSFALSKDEQAAANMARLSVEYTEKSFYAPQNDILQAMMKDYNQSNVDLFLASLSKPDFKIDTPKTRDIYLYMPARMSLIFSTVASFSFINLDTGVLDKPFTFSTAYPL--DVKNGEIYLSNGVVLSDDFRSFKIGDNVVSVNSIVEINSIKQGEYKITPIDDKAQFYIFYAIPYAQFILMDKTMFNSAYVQMFFLGNYDKNLFDLVINSRDAKVFKLK... 290
6 -62.8003waj_A mol:protein length:875 Transmembrane oligosaccharyl transferase  ali model follow..  15  2....QNAESWFKKYWHLSVLVIAALISVKLRILNPW------NSVFTWTVRLGGNDPWYYYRLIENTIHNFYPYGSYTHFGPFLVYLGSIAGIIFGESLRAVLAFIPAIGGVLAILPVYLLTREVFDKRAAVIAAFLIAIVPGFLQRSILGFNDHHIWEAFWQVSALGTFLLAYNRRQMAYPVIAGITIGLYVLSWGAG-FIIAPIILAFMFFAFVLAGFVNADRKNLSLVAVVTFAVSALIYLPFAFNYPGFSTIFYSPFQLLVLLGSAVIAAMPLAVIVLTALIMGLFFVISPDFARNLLSVVRVVQPKGGALTIAEVYPFFFTHAVLHFGALFFFGMAGILYSAYRFLKRRSEMALLIWAIAMFIALWGQNRFAYYFAAVSAVYSALALSVVFDKLIGARNKLSYFRVAFALLIALAAIYPTYILADAQSSYAGGPNKQWYDALTWMRENTPETYGVISWWDYGHWIEAVAHRMPIANPFQAGIGNK-ASSFFTAENESYAEFVAEKLNVKYV...................................................................................................................................................................................................... 608
7 -38.4002lgz_A mol:protein length:273 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3  ali model follow..  8  1...............................................................................................................................................................................................................................................................................................................................................................................................MGSSSSGLVPRGS---------------HSTWVTRTAYSSPSVVLPSQTPDGKLALIDDFREAYYWLRMNSDEDSKVAAWWDYGYQIGGMADRTTLVDNNTWNNTHIAIVGKANASPEEKSYEILKEHDVDYV--------LVIFGGLIGFGGDDINKFLWNIRISEGIWPEEIKERDFYTAEGEYRVDARASETMRNSLLYKMSYKDFPQLFNGGQATDRVRQQMITPLDVPPLDYFDEVFTSENWNVRIYQLKKDDAQGRTLRDVGELTRSSTKTRRSIKRPELGLRV......................................... 267
8 -36.2003vgp_A mol:protein length:164 Transmembrane oligosaccharyl transferase, putative  ali model follow..  15  2....................................................................................................................................................................................................................................................................................................................................................................................................................................................PDLTEDWKEALEWMRTSLEEQNYVMSWWDYGNWILYVSKKAVVANNFQAGAVDA--AKFFTAKSEDEAIKIAKKRGVR-----------------------------------------------YVVTADEITMKDANNTKFPAIMRIAGY---------------------------------------------------------------------------NVDLMTEGEILNFFNHTVLYRLHMENAENLTHFRLVKEFGDVKIFEVVGS. 164
9 -35.7003vu0_A mol:protein length:162 Putative uncharacterized protein  ali model follow..  17  2.....................................................................................................................................................................................................................................................................................................................................................................................................................................................EMTMDWKEALNWMKENLEAQDYVLSWWDYGNWILYVAKKAVVCNNFQAGADDA--AKFFTAQSEEEAMKIVEKRKVR-----------------------------------------------YVVTVEELKTKFIPIMQIAG----------------------------------------------------------------------------------SPEYMKNKEIIDFFNKTMLYKLHVENATNLTHFRLLKNFGTVKIFEVK... 162
10 -29.0003wov_A mol:protein length:512 Oligosaccharyl transferase  ali model follow..  10  1.......................................................................................................................................................................................................................................................................................................................................................................................................................................MVIARNAKALKVSEIETTGWEQVLKWLNENTSKYATATSWWDYGYWIELLGHRRASADGGHARD-RDHILALFLARDGNVSEVDFESWELN-----------------------------------------------YFIIYLNDWAKFNAISYLGGAITRRRGQVTTILPLQGSGGIYVNPYAGISVRVVQSNTTSKVTVNVRGRAECSPIYTLLIPGNKKIPGNGRCSDGSPFPYVLYLAPNFGLITYYKVATSNFIKLAFNIPISYSNFVPVYGYGNVIVYEFRP.. 260
11 -28.1002zag_A mol:protein length:497 Oligosaccharyl transferase stt3 subunit related protein  ali model follow..  10  3........................................................................................................................................................................................................................................................................................................................................................................................................................................LLAQSAKSMRTTEIETSGWEDALKWLRENTPEYSTATSWWDYGYWIELLGQRRASADGGHARDRDHI-LALFLARDGNISEVDFESWELN-----------------------------------------------YFLVYLNDWAKFNAISYLGGAITRREYNGDESGRGAVTTLLPLPRYGEKYVNAKVIVDVSNSSVKVTVGDRECDPLMVTFTPSGKTIKGTGCSDGNAFPYVLHLTPTIGVLAYYKVATANFIKLAFGVPASFSNFEPVYESGNVIVYRFTPF. 257
12 -27.4003vu1_A mol:protein length:506 Putative uncharacterized protein PH0242  ali model follow..  11  1..............................................................................................................................................................................................................................................................................................................................................................................................................................................MALKNTEIEVTGWEQALKWLRSNTSKYATATSWWDYGYWIELLGNRRASADGGHARDRD-HILALFLARDGNISEVDFESWELN-----------------------------------------------YFIIYLNDWAKFNAISYLGGAITRKEYNGDENGRGRVTTILLTQAAGNVYVNPYARIQNKTRRIAVNIGQLECSPILSVAFPGNIKIKGSGRSDGSPFPYVVYLTPSLGVLAYYKVATSNFVKLAFGIPTSFSNFIPVYQYGSVIVYEFRP.. 252
13 -17.6005ezm_A mol:protein length:578 4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferases of PMT family  ali model follow..  9  21...TQGAVGWSAATGWVVLFVAVALVVWFVSL---------------DMRHLVGPDEGRYAEISREMFASGDNALKYFEKPPFHMWVTVVGYELFGLG-EWQARLAVALSGLLGIGVSMMAARRWFGARAAAFTGLALLAAPMWSVAAHFN---LDMTLAGVMSCVLAFMLMGQHAARRGWMVACWAAMGVAILT-----LVGIALPGLVLVVYTLVTRDWGLWRRLHLALGVVVMLVITVPWFYLVSV-WQRYTSNIHSRSGSVFYFLPLVIGGFLPWAGIFPKLWTAMRAPVEGTQARFRPALMAGIWAIAIFVFFSISRSKLPGYIVPVIPALGILAGVALDRLSPRSWGKQLIGMAIVAACGLLASPVVATLNANHIPVAVAFVVMLLGIAVARLLLRRGVLPSVAVYAMGMYLGFTVALLGHETVGRPASGADI-------APQIAQKLTPEMPLYGVQMLDHTLPFYLRHPLLTFGATVEPQRVVPDVDSFTKLWKNGQPAMAVMSPDTYLALAPTLSMYVVAR........................................................................................................................................................................................ 561
14 -15.0003wai_A mol:protein length:739 Maltose-binding periplasmic protein, Transmembrane oligosaccharyl transferase  ali model follow..  11  350..................................................................................................................................................................................................................................................................................................................................................................................................................................AVINAASGRQTVDEALKDAQTNKQWYDALTWMRENTPDGE-VISWWDYGHWIEAVAHRMPIANPFQAG----------IGNKYNNVPGASSFFTAE--------------------NESYAEFVAEKLNVK------------YVVSDIEMEGKYYAMAVWAEGDLPLAEKYYGGYFYYSPTGTFGYANSQWDIPLN-------------------------------------------------SIIIPLRIPSELYYSTMEAKLHLFDGSGLSHYRMIYESDYPAE....... 575
15 -9.8104l9d_A mol:protein length:88 Protease  ali model follow..  8  20.............................................................................................................................................................................................................................................................................................................................................................................................................................................................SVMSQNTSSDSDGNIVSYWDFG-------------NGQTSTEAASYSVTLTVTDDKGDSDTHQQTIKVDTPN..................................................................................................................................................................................................... 88
16 -9.0502y72_A mol:protein length:85 COLLAGENASE  ali model follow..  16  24..................................................................................................................................................................................................................................................................................................................................................................................................................................................................KDSKDEDGKIVSYWDFG-------------DGATSRGKNTYNVTLKVTDDKGATATESFTIE.......................................................................................................................................................................................................... 82
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.