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Query: 3rd3_A mol:protein length:197 Probable transcriptional regulator, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GSHMKTSYDDTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYHYFKSKEQFGQALLEDYFRVYLADMDQRFSAPGLNARERLMSYWQKWLDNACPPCDEQRCLVVKLSAEVADLSESMRITLRDGSDGIIERLVGCLGQGRDDGSLAPCDARHMASALYQLWLGASLLSKLHRSPGPLETAMQTTRSLLEILast
1 -88.5003rd3_A mol:protein length:197 Probable transcriptional regulator  ali model  100  1GSHMKTSYDDTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYHYFKSKEQFGQALLEDYFRVYLADMDQRFSAPGLNARERLMSYWQKWLDNACPPCDEQRCLVVKLSAEVADLSESMRITLRDGSDGIIERLVGCLGQGRDDGSLAPCDARHMASALYQLWLGASLLSKLHRSPGPLETAMQTTRSLLEI 197
2 -81.5004yze_A mol:protein length:201 HTH-type transcriptional repressor NemR  ali model follow..  42  1GSMNKHTEHDTREHLLATGEQLSLQRGFTGMGLSELLKTAEVPKGSFYHYFRSKEAFGVAMLERHYAAYHQRLTELLQSGEGNYRDRILAYYQQTLNQFSQHGTISGCLTVKLSAEVSDLSEDMRSAMDKGARGVIALLSQALENGRENHSLTSGEPLQQAQVLYALWLGANLQAKISRSFEPLENALAHVKNIIA. 197
3 -80.2003bru_A mol:protein length:222 Regulatory protein, TetR family  ali model follow..  30  23..RGAPDASLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYHYFRNKADFGLALIEAYDTYFARLLDQAFLDGSLAPLARLRLFTRMAEEGMARHGFRRGCLVGNLGQEMGALPDDFRAALIGVLETWQRRTAQLFREAQACGELSDHDPDALAEAFWIGWEGAILRAKLELRPDPLHSFTRTFGRHFV. 217
4 -76.4003eup_A mol:protein length:204 Transcriptional regulator, TetR family  ali model follow..  18  2AMKELSKSDRTRQFIIESTAPVFNVKGLAGTSLTDLTEATNLTKGSIYGNFENKEAVAIAAFDYNWGHVKSVLTAKVQACN-TYKEMLLVYSSMYNDADGSLFPVGGCPLLNTTIEADDTHDALRKKAGEAILSWKKNLVTIIKKGIQAKEFRDTDVTKIAFSMIALVEGAILIHRATKNRAYSDYVFESLEDLIA. 197
5 -75.5003qbm_A mol:protein length:199 TetR transcriptional regulator  ali model follow..  19  1GM---RKGQETRERVVAQAAALFNVSGYAGTAISDIMAATGLEKGGIYRHFESKEQLALAAFDYAAEKVRERFAVGLAGHK-HTVDTIIAFLDVFRSYAERPPLVGGCPILNTAIESDDTNPMLRERVRAVIDEWRETIRTLVQTGIARGEIREVDADRLALLIIATMEGAVMLARILETATPLEHAYTHLATYIT. 193
6 -74.2003on4_A mol:protein length:191 Transcriptional regulator, TetR family  ali model follow..  18  1SNAMPMNISNTKERILAVAEALIQKDGYNAFSFKDIATAINIKTASIHYHFPSKEDLGVAVISWHTDKIAAVLSDISNNSSLSAKEKIQKFFDAILTLTYNSE-NKMCLGGMFASDFQSLPVSIQNQAKKFFELIIEWLKGVLETNGYDNE----SSLSLAKQIISLVEGGLLLARLYGDETFLEGVRHFIDQTIK. 191
7 -73.9003knw_A mol:protein length:212 Putative transcriptional regulator (TetR/AcrR family)  ali model follow..  42  6.THQVKKSEAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTTET-SARDKLMNYLQCWVKDATEQSWAESCLIVKMAAEVADLSEDMRLIMNDGVKRLIARMADLIRIGQQEGSIQSVVPDVLAQVIYQMYLGAALLSKLYKHKAPLFQALESTKMMLD. 201
8 -69.1001sgm_A mol:protein length:191 Putative HTH-type transcriptional regulator yxaF  ali model follow..  21  2.....TSRGDSREKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHFFPNKEELAIEAVTYTGKIVEHLIQQSM-DESSDPVEAIQLFIKKTASQFDNTESIKGIPVGLLASETALISEPLRTVCMKVFKSWEAVFARKLMENGFAEE----EANQLGTLINSMIEGGIMLSLTNKDKTPLLLIAEQIPVLVR. 188
9 -68.6002hyj_A mol:protein length:200 Putative tetR-family transcriptional regulator  ali model follow..  15  4.RRSAAEAQATRGRILGRAAEIASEEGLDGITIGRLAEELEMSKSGVHKHFGTKETLQISTLDKAFVDFWHRVVEPALAEP-PGLRRLRAVCANSVGYLEEPLLPGGCLLTAALSEYDGRPGRVRDAVAEVWSRWREQLRADLTAAVDKGELPGFDVEQALFEIVAAGLALNAAMQLQHDRTAADRARRAIERALA. 198
10 -67.7003dpj_A mol:protein length:194 Transcription regulator, TetR family  ali model follow..  16  1..SNAMVQAQTRDQIVAAADELFYRQGFAQTSFVDISAAVGISRGNFYYHFKTKDEILAEVIRLRLARTAQMLADWQGTGD-SPRARIASFIDLMIMNRAKIT-RYGCPVGSLCTELSKLDHAAQGQANGLFTLFRDWLQRQFAEAGCTT-----EAPALAMHLLARSQGAATLAQSFHDEGFLRSEVADMHRWLD. 187
11 -67.4002g7s_A mol:protein length:194 transcriptional regulator, TetR family  ali model follow..  18  2...SMKNPQSKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQYRQEAEAGIAELEKNIS-DPLEQLRAYIGYWEGCIADAT-HPFCVCALLASEIPVLPETVVLEVRAHFRSLSDWLTAVLERGIAQGRLVTGTARANAEIFMATVHGAMLSARAHGDAATFGAITRPMLERIT. 193
12 -60.8002fd5_A mol:protein length:180 transcriptional regulator  ali model follow..  17  1...MSDKKTQTRARILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQSKDALMLEAFEQLLGKRRELLGELDPGLSGKERRALAAAF-YLSRKHRDAQVDAGCPLPATLAEVARLPEGFREVLSRHVEIMVTSLAESP------------EETDVALADLVLMIGGLALARALGPGELSDRVLRAAKQAVN. 180
13 -54.7001ui5_A mol:protein length:215 A-factor receptor homolog  ali model follow..  18  1.MARQLRAEQTRATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGALYFHFAAKEDLAHAILEIQSRTSRRLAKD-LDGRGYSSLEALMRLTFGMARLCV------QGPVLRAGLRLATAGVPVRPPLPHPFTEWREIATSRLLDAVRQSDVHDIDVDSVAHTLVCSVVGTRVVGGTLEPAGREPRRLAEMWYIL.. 188
14 -52.2003g7r_A mol:protein length:221 Putative transcriptional regulator  ali model follow..  20  22..AAARTPSEARARLLGTATRIFYAEGIHSVGIDRITAEAQVTRATLYRHFSGKDDLILAYLDQADRGIRAQVTAARGSSP-AADGQVRAVARSIVDGIRSPGF-RGCAFLNAVAEYPDPAHPVHRAVLAHRQWFLDTVTELLAQVGDG------DGVAAGRHLVMLRDGAMAAGCLFDPELVSETFLHGVEGVLR. 207
15 -51.8003jsj_A mol:protein length:190 Putative TetR-family transcriptional regulator  ali model follow..  19  1GMTTEVK-QSPRERLLEAAAALTYRDGV-GIGVEALCKAAGVSKRSMYQLFESKDELLAASLKERSAAFVAKALPPADDGR-SPRERILYVFERVESQAGAPDF-QGCRYLAVQIELKDQAHPASRVAYQIKADLMAFFRSEAERGGAS------DPDLLARQLILVFDGASARAGIGADNLTGLIVPTLTTLLDA. 186
16 -50.3002i10_A mol:protein length:202 Putative TetR transcriptional regulator  ali model follow..  15  3.MPGGRRRGFDDQVALQTAMELFWRQGYEGTSITDLTKALGINPPSLYAAFGSKRDLFEKTLDRYMCERTLQLEEAMVRP--TAHEAVLDFLTGRVEVFTAPGQPFGCMTVQAGLASGEPHHEIVDLLTAAREQMRQTVLDRFEKALADGDLAGTDCTALARYVMAAVYGLSVEAASGAPREELTAAAILAAQVVP. 196
17 -50.3004uds_A mol:protein length:214 MBDR REGULATOR  ali model follow..  15  5.NKKEEQRKASTENILGCALDLFVKNGYRATTIDMIAARAGLTKGAIYFYFKTKDAIMLMLLEEAEKYIVDPIDEYMANAGPLADAKLVKFINMQALLGVTKP-QHVLLLILVSIDFSGTGDDIEKRAKAIYRRMYGHVEQLIAQGQTEGVFRDSGSDELASIVMAAHDGVLIEWYRRPNELTGKTLTKALRSVL.. 198
18 -49.9005xay_A mol:protein length:228 Gamma-butyrolactone receptor protein  ali model follow..  21  1..ARQERAAQTRRTIVAAAAAVFDELGYEATTIAEILKRSGVTKGALYFHFTSKEQLAQEVLTSQLRAVPPVEEQR---------LVLQQIIDETLLLAQLLSKGDPLVRGSVRLTVEPGAPRDGLDRRAPMQEWIGHGRDLLRRAEAGGELLPLDVDAVARMLVGGFTGAQILSNILTGHADLLERVTDMHRHL.. 185
19 -49.9002uxh_A mol:protein length:210 HTH-TYPE TRANSCRIPTIONAL REGULATOR TTGR  ali model follow..  16  3.RRTKEEAQETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFNNKAELVQALLDSLHETHDHLARASESEDEVDPLGCMRKLLLQVFNELLDARTRRINEILHHKCEFTDDMCEIRQQRQSAVLDCHKGITLALANAVRRGQLPELDAERAAVAMFAYVDGLIRRWLLLPDSVDLLGDVEKWVDTG.. 198
20 -49.6002w53_A mol:protein length:219 REPRESSOR  ali model follow..  16  3.RKTKEDTQATREGILDAAEACFHEHGVARTTLEMIGARAGYTRGAVYWHFKNKSEVLAAIVERVHLPFMQELERTSTDQRDTPVHDLRAVMIHSFIELSEDERLRKTMEIMLRSDASANTRVLTEMQQAGFRDALDRMERALRRARDLGQLRGADPKIAARMLHATVLGVLHGAMVEPELMDLKRDGMLALDMT.. 197
21 -49.2003vib_A mol:protein length:210 MtrR  ali model follow..  17  2.RKTKTEALKTKEHLMLAALETFYRKGIARTSLNEIAQAAGVTRDALYWHFKNKEDLFDALFQRICDDIENCIAQDAADAEGGSWTVFRHTLLHFFERLQSNDIHYKHNILFLKCEHTEQNAAVIAIARKHQAIWREKITAVLTEAVENQDLADLDKETAVIFIKSTLDGLIWRWFSSGESFDLGKTAPRIIGIM.. 197
22 -48.2002qop_A mol:protein length:215 HTH-type transcriptional regulator acrR  ali model follow..  17  3.RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRR--EIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPDLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKEARDYVAIL.. 198
23 -47.8003lhq_A mol:protein length:220 AcrAB operon repressor (TetR/AcrR family)  ali model follow..  17  6.RKTKQQALETRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYWHFKNKSDLFSEIWELSESNIGELEIEYQAKFPDDPLSVLREILVHILEATVTEERRR--EIIFHKCEFVGEMVVVQQAQRSLCLESYDRIEQTLKHCINAKMLPNLLTRRAAILMRSFISGLMENWLFAPQSFDLKKEARAYVTIL.. 201
24 -47.4003br0_B mol:protein length:194 HTH-type transcriptional regulator qacR  ali model follow..  12  2.........NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKSEQIKAK-TNREKFYLYNELSLTTEYYYPLQN---AIIEFYTEYYKTNSINEKMNKLQNKYIDAYHVIFKEGNLNGEWSINDVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIFLN. 184
25 -47.0001jt0_A mol:protein length:194 HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN QACA 5`REGION  ali model follow..  12  2.........NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKAK-TNREKFYLYNELSLTTEYYYPLQN---AIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWSINDVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIFLN. 184
26 -46.9003lwj_A mol:protein length:202 Putative TetR-family transcriptional regulator  ali model follow..  16  1GMPIEKQNKERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYNYFVDKEDILKNLLEDFAKQIISSISEYYLVEK-DLYERFIETKRLTMEVFAQNE------LSEIYSRVAGSSAPIDQCLKQFEDRLLEFYSRNIEYGIKKGVFKNVPVSPIAHSILAIEKFSLYKWVVLKAITK-EEMIEMVLSFHKT 192
27 -46.8003crj_A mol:protein length:199 Transcription regulator  ali model follow..  18  6.GPSDRTFSDQTEEIMQATYRALREHGYADLTIQRIADEYGKSTAAVHYYYDTKDDLLAAFLDYLLERFVDSIHDV---ETTDPEARLNLLLDELLVKPQENPDLSVALLEMRSQ--APYKEAFSDRFRQNDEYVRYMLKAVINHGIDEGVFTDVDAEHVTRSLLTIIDGARTRAVMLDDTEELETARQTASEYAD. 195
28 -46.8003br3_B mol:protein length:194 HTH-type transcriptional regulator qacR  ali model follow..  12  2.........NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKSEQIKAK-TNREKFYLYNELSLTTQYYYPLQN---AIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWSINDVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIFLN. 184
29 -46.5005daj_A mol:protein length:212 NalD  ali model follow..  16  2.RRTKEDSEKTRTAILLAAEELFLEKGVSHTSLEQIARAAGVTRGAVYWHFQNKAHLFNEMLNQVRLPPEQLTERLSGCDGSDPLRSLYDLCLEAVQSLLTQEKKRRILILMQRCEFTEELREAQERNNAFVQMFIELCEQLFARDECRVRLHGMTPRIASRALHALILGLFNDWLRDPRLFDPDTDAEHLLEPM.. 197
30 -46.4002wui_A mol:protein length:210 TRANSCRIPTIONAL REGULATOR  ali model follow..  17  3.RKTKEESQKTRDGILDAAERVFLEKGVGTTAMADLADAAGVSRGAVYGHYKNKIEVCLAMCDRAFGQIEVPDENARVPALDILLRAGMGFLRQCCE---PGSVQRVLEILYLKCERSDENEPLLRRRELLEKQGQRFGLRQIRRAVERGELPRLDVELASIYLQSLWDGICGAWTERLRDDPWNRAERMFRAGLD. 197
31 -45.3004ac6_A mol:protein length:191 HTH-TYPE TRANSCRIPTIONAL REPRESSOR ACNR  ali model follow..  15  6.VAAGDKPTNSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHHFGDKENLFLALAREDAARMAEVVSE----------NGLVEVMRGMLEDPERYDW---MSVRLEISKQLRTDPVFRAKWIDHQSVLDEAVRVRLSRNVDKGQMRDVPIEVLHTFLETVLDGFISRLATGASTEGLSEVLDLVEGTVR. 188
32 -44.9006azh_A mol:protein length:192 TetR family transcriptional regulator  ali model follow..  16  1....SNAMNRTKKAIFEAAINVFATSGYNGSTVDEIASKANVAKGTLYYNFKSKEEIFNFVISKGLEIWHEKLTD-IENLEDEPIEKLKKLFKMQFELLYENR------FFKMVMSQLWGKETRQDELRNKITEYIEGIERILKEAISKKQIRECDISLLAHSLFGSLISTSLYELSRDKEFNVNKVIDEITINI.. 185
33 -44.7005gpa_A mol:protein length:195 Transcriptional regulator (TetR/AcrR family)  ali model follow..  15  1...MGKKKGPKYDQIIDAAVQVIAEHGYHQAQVSKIAKAAGVADGTIYLYFNNKEDVLISLFQEKMGRFVDKIRSQMNEAT-DVEEKLKILVNMHFKQLAADH-----LAIVTQLELRQSNTELALKINEVLKGYLNLLDELLMEGKEKGYFQELDTRLARQMIFGTLDEVVTNWVMKDCKYDLTALVKPVHQLL.. 188
34 -44.5001rkt_A mol:protein length:205 protein yfiR  ali model follow..  17  4.KVTKEHKDKRQAEILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVYLYFSSTEEMFRRIIETGLDEGLRKLDKSAEHQ--SVWASISSYLDELTEGLRDVADTLAPVQFEYLVT-AWRNEERRQYLEKRYDLFVERFSRLLQKGIDQGEFQPQPLATIAKFFLNMNDGIIQNALYFDEEKDVSGLAESAKLYLK. 197
35 -44.5006ayh_A mol:protein length:201 TetR family transcriptional regulator  ali model follow..  19  5.ENKLTEPLPTRMRILRAARQCFAENGFHSTSMKTICKASDMSPGTLYHHFPSKEALIEAIILEDQERALTHFREPL-----EGVGLVDYLVESTIAVTREDYAQRA-LVVEIMAE-GMRNPQVAEMLTNKYHTIIASLVARFNDAQAKGEIGDVDKEMAARLLLATTYGVLSDSSSAENARH-VSFATTLRTMLT. 192
36 -44.2003kz9_A mol:protein length:206 SmcR  ali model follow..  11  10..RTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLSDNI-DLDLHAKENIANITNAMIELVVQDN-----WLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCQHNPEDLANLFHGICYSLFVQANRTNNTAELSKLVSSYLDML.. 198
37 -43.7005l0x_A mol:protein length:223 Hemagglutinin/protease regulatory protein  ali model follow..  13  24..RTRLSPQKRKLQLMEIALEVFAKRGIGRGDHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFLTDHI-DLDLDVKTNLQTLCKEMVKLAMTDC-----WLKVWFEWSASTRDEVWPLFVSTNRTNQLLIRNMFMKAMERGELCKHDVDNMASLFHGIFYSIFLQVNRLGEQEAVYKLVDSYLNML.. 212
38 -43.7002g3b_A mol:protein length:208 putative TetR-family transcriptional regulator  ali model follow..  19  2........SERRDAILKASATAIAQRGIRGLRVNDVAEVAGVSPGLLYYHFKDRIGLLEAALNYINDRARAYRSEGEGSGD-SARDRLTRSLLGEIQ--DRPEVVENSLAWNELRASAVYEEALRDPLARTTAAWVSEIADAIVQAQATGEISSLDPQPTAVTMTALVEG--LSGRWLCKEISTEDARSHLLGAID. 185
39 -43.6003ppb_A mol:protein length:195 putative tetR family transcription regulator  ali model follow..  18  1GMT-ASSKRTKKQAILETALQLFVSQGFHGTSTATIAREAGVATGTLFHHFPSKEQLLEQLFLGVKQEFADAIQASV-SSRGDLKQDAEQLWFAALTWAMANPL-----KQAFFQLYSMSPTVEQSVRDQAMHGILGFIAELIRQGQASGELAEYPIELMQDNCHGQYLAATRYFVDHPERWQQAHERSASFALF.. 188
40 -43.5004me9_A mol:protein length:189 Transcriptional regulator, TetR family  ali model follow..  17  3.......AKNKQEDIFDAAMQLFAERGYDGTTIPMIAEKAKVGAGTIYRYFENKEALVNSLFSKSMLQLSEMIKTDF-PVEANIREQFSHTYNRLFEFARNNVDA-------LFTNSHCDSYFLDEQSKKIFDDFIGFFMNIIEDGIVKGLLRPLPPVALIIIVYQPLEKLIATGQLEYSKELVKELEESSWNAIRI 188
41 -43.4001vi0_A mol:protein length:206 transcriptional regulator  ali model follow..  18  3....LKQKRPKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFIERMEEDIKEKA-TAKEKLALVISKHFSLLAGDH-----LAIVTQLELRQSNLELRQKINEILKGYLNILDGILTEGIQSGEIKGLDVRLARQMIFGTIDETVTTWVMNDQKYDLVALSNSVLELL.. 189
42 -43.4003f0c_A mol:protein length:216 Transcriptional regulator  ali model follow..  16  4..NKIKNEDGKLELIINAAQKRFAHYGLCKTTMNEIASDVGMGKASLYYYFPDKETLFEAVIKKEQNVFFDEMDKIL-NSGIDATALLKKYVKLRSLHFRHL------LSKLRSDFFHNTKPVFAKAFESFKQKEVEIVAGIIQYGITTKEFKRGNKHENAEFLVHLLLGVRMVKLKYKEINDFDDLDKNMCKVAGM 198
43 -43.4003geu_A mol:protein length:189 Intercellular adhesion protein R  ali model follow..  11  1.......SNAMKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNNIIMMNQ-NKSNYSIDALYQFLFEFIFDIEER-------YIRMYVQLSNTPEEFSGNIYGQIQDLNQSLSKEIAKFYDESKIKMTKED-FQNLILLFLESWYLKASFSQKFGAVEESKSQFKDEV.. 179
44 -43.3002hyt_A mol:protein length:197 TetR-family transcriptional regulator  ali model follow..  17  1GMVRRTRMEETRATLLATARKVFSERGYADTSMDDLTAQASLTRGALYHHFGDKKGLLAAVVEQIDAEMDERLQAISDTAE-DDWEGFRCRCRAYLEMALEPEIQR----------LRDARAVLGGASPDSQRHCVESMQRLIDNLIRQGVVAEADPQALASLIYGSLAEAAFWIAEGEDGNARLAQGVAALELL.. 188
45 -43.1006ayi_A mol:protein length:199 HTH-type transcriptional regulator UidR  ali model follow..  19  6.DNMQTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYHHFISKEALIQAIILQDQERALARFREPI-----EGIHFVDYMVESIVSLTHEAFGQRA-LVVEIMAE-GMRNPQVAAMLKNKHMTITEFVAQRMRDAQQKGEISDINTAMTSRLLLDLTYG-VLADIEAEDLAREASFAQGLRAMIG. 193
46 -43.0003ang_C mol:protein length:204 Transcriptional repressor, TetR family  ali model follow..  14  3...REYQKKRRRERIFRAAMELFRNRGFQETTATEIAKAAHVSRGTFFNYYPYKEAVLLDYGSQLLAGLREEVRRLL-AQGREPVEVLRHLFRVLAEGTAREK------LLLPMFYELLNPDPVRARAAFEALPLGDLIAEILKPLREQGVLRDFSLERMGRTLADLYFLSALRWAAYTPGRDLAEELEKNLRLL.. 189
47 -43.0005wm9_A mol:protein length:214 Rv0078  ali model follow..  18  6.RTQEERSAATREALITGARKLWGLRGYAEVGTPEIATEAGVTRGAMYHQFADKAALFRDVVEVVEQDVMARMATLVAAGAATPADAIRAAVDAWLEVSGDPE------VRQLILLDAPVVLGWAGFRDVAQRYSLGMTEQLITEAIRAGQLARQPVRPLAQVLIGALDEAAMFIATADDPKRARRETRQVLRRL.. 194
48 -43.0006el2_A mol:protein length:196 Transcriptional regulator TetR family  ali model follow..  17  5.APKTEKGKESLNKILDASVELIADKGFLSTSINDITSKAGVAYGLFYFYFKSKHDILDEIIRQFNRNMRYYLKTYTQNLD-SRIDVEKVGMKKFLEWMNENK--------KYYKIFIETQVHRPDIYKWHFMKLAERYTTGLSEAMRRGEIINVDPELLSYVLIGIAHMLGKRYVLWSNSGLTLKQQRDLDLIIE. 190
49 -42.9004ich_A mol:protein length:311 Transcriptional regulator  ali model follow..  18  106.APAGEPQSEARRRILETAWRLIARRGYHNVRIHDIASELGTSNATIHYHFPSKKDILLEALRRNVKLAFDRQVAELHTIA-DARERLVRLVELQLPTPGLLRDEWSVWLQVWTE--STLNPKIRDLYNDAYDRWYQTIAMTIRTGQKQGVFRDQDADELATRLSALIDGLGIQVLTGKRGCSVDHMRQHLNDFIE. 297
50 -42.9005icj_A mol:protein length:221 Probable transcriptional regulatory protein  ali model follow..  18  20.RTQEERSAATREALITGARKLWGLRGYAEVGTPEIATEAGVTRGAMYHQFADKAALFRDVVEVVEQDVMARMATLVAAGAATPADAIRAAVDAWLEVSGDPE------VRQLILLDAPVVLGWAGFRDVAQRYSLGMTEQLITEAIRAGQLARQPVRPLAQVLIGALDEAAMFIATADDPKRARRETRQVLRRL.. 208
51 -42.8002f07_A mol:protein length:197 YvdT  ali model follow..  13  2.FTMPKQTSGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLYFSSKNALIPAIAENLLTHTLDQIKGRLHGDE-DFWTVLDILIDETFLITERHKDIIVLCYSGLAID------HSMEKWETIYQPYYSWLEKIINKAIANHEVTGINSKWTARTIINLVENTAERFYIGFEQDNVEVYKKEIFTFL.. 190
52 -42.8002gen_A mol:protein length:197 probable transcriptional regulator  ali model follow..  17  2....HMGRSSRKDEILQAALACFSEHGVDATTIEMIRDRSGASIGSLYHHFGNKERIHGELYLAGIGQYAALLEAGF-ARARSAEETVRLLVTSYIDWVVANPDWARFI---LHSRGRVEAGELGERLRADNQAHFARIHAALAGYRAEGLFREMPDDCFASVVIGPAHDLARQWLAGRTRVALADCRELLAQVA.. 188
53 -42.7002nx4_A mol:protein length:194 Transcriptional regulator, TetR family protein  ali model follow..  18  1GVPKLVDHDERRRSITAAAWRLIAARGIEAANMRDIATEAGYTNGALSHYFAGKDEILRTSYEHISEATDRRIAEALGDA--TGLDALRILCREVMPINEEQLLEARIAASLWPR--AMYDEQMAATNRRTMDNWREQMAIFLEQAREEGSVGDIDVTIVVEQLLNMMMGMQILGVLTPGETSSERQLEMLEQFVA. 192
54 -42.6005d18_A mol:protein length:216 TetR family transcriptional regulator  ali model follow..  17  6.KKKQQQGERSRESILDATERLMATKGYAATSISDIRDACGLAPSSIYWHFGSKEGVLAAMMERGAQRFFAAIPT-WDEAHGPVEQRSERQLTELVSLQSQHP-----LFYLLSME-RSQDPAVAAVVRRVRNTAIARFRDSITHLLPSDIPPDLVVAELTAFAVALSDGVYFAGHLEPDTTDVERMYRRLRQAL.. 199
55 -42.4003s5r_A mol:protein length:216 Transcriptional regulator TetR family  ali model follow..  16  1GMQATMTDKNTRELLLDAATTLFAEQGIAATTMAEIAASVGVNPAMIHYYFKTRDSLLDTIIEERIGRIIDMIWEPVTGEEDDPLIMVRDLVNRIVNTCETMLWLPSLWIREIVNEGGALREKM---LNNIPIDKMNKFSAKIAEGQKQGVINGIDSRLLIGSIIGLTMLPLATAKLRDKGLSSEDIVCHVTALL.. 198
56 -42.4003vpr_A mol:protein length:190 Transcriptional regulator, TetR family  ali model follow..  17  2........TTTRDRILEEAAKLFTEKGYEATSVQDLAQALGLSKAALYHHFGSKEEILYEISLLALKGLVAAGEKALEVA--DPKEALRRFMEAHARYFEENYPF----FVTMLQGIKSLSPENRLKTIALRDRHEENLRAILRRGVEQGVFREVDVALAGRAVLSMLNWMIRWFRPDGPMRAEEVARAYHDLILR. 183
57 -42.1003b81_A mol:protein length:203 Transcriptional regulator, AcrR family  ali model follow..  16  1GMSRNINFNNKRTELANKIWDIFIANGYENTTLAFIINKLGISKGALYHYFSSKEECADAAIENRVAFFSNEVLKES-EEGLNSIERLKKILLAGIKITSVNEQV-------KEINSPSNKIFHQKLMVAIIKYFAPIYADIISQGNEEGVFKVKYPLETAEIILTLSHFYLDEDLFKWKKEDMSLKLTAFKETL.. 188
58 -42.1003he0_A mol:protein length:196 Transcriptional regulator, TetR family  ali model follow..  16  5...TDNPAVDKRDQILAAAEQLIAESGFQGLSMQKLANEAGVAAGTIYRYFSDKEHLLEEVRLNVAKRIASAVQAGV-NDDMPLKERYRTMWLNIWNLAGSNLNA-----ISNRVQYDSLPCTTRNKTWELERKMFAQVDRLFNQGKEEGVFKPLDNEVLSGLSFEASVALAALGFYQLDDDALEAAIEASWDAII. 194
59 -41.9002gfn_A mol:protein length:209 HTH-type transcriptional regulator pksA related protein  ali model follow..  17  1.VPKIVDHDERRRALADAVLALIAREGISAVTTRAVAEESGWSTGVLNHYFGSRHELLLAALRRAGDIQGDRYRTILDEEGAGPIEKLRNITASILPLDERRLAMTRVFLFFYAE--GAAEETARGEIAAFLARWRGVVRESVVAAQREGTVSDLDADAVTVALVALTDGLALQAILDPVVMKAISAEDAAARCVD. 194
60 -41.9003e7q_A mol:protein length:215 transcriptional regulator  ali model follow..  17  6.RFSRLEPEQRKALLIEATLACLKRHGFQGASVRKICAEAGVSVGLINHHYDGKDALVAEAYLAVTGRVMRLLRGAIDTAPGGARPRLSAFFEASFSAELLDPQLLDAWLAFWGA--VGSIEAIGRVHDHSYGEYRALLVGVLRQLAEEGGWADFDAELAAISLSALLDGLWLESGLNPATFTPRQGVQICEAWVD. 198
61 -41.8002zcm_A mol:protein length:192 Biofilm operon icaABCD HTH-type negative transcriptional regulator icaR  ali model follow..  15  2..........MKDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVENCFNYFIDFMMRNH-DDNYSIDGLYQFLFKFIFDVDERYI--------KLYVQLSSAPEALNSEIKHHLQEINTTLHDELIKYYDPTHIA-LDKEDFINMILMFLETWYFRASFSQKFGIIEDSKNRFKDQV.. 176
62 -41.8003ccy_A mol:protein length:203 Putative TetR-family transcriptional regulator  ali model follow..  19  5ARTRSADYENIRDTIIERAAAMFARQGYSETSIGDIARACECSKSRLYHYFDSKEAVLRDMLTTHVDSLLERCRQVL-YGSNEPKTRFLQIVKLFLEIYATSRDR----HVVMLTCLDALPEDQRKALIAKQRELIAYVRDALLQLRPDMAANRTLAHVDTMLFFGMINWTYTWYKADGSVSPDALAERTVQLFLD. 195
63 -41.8003col_A mol:protein length:196 Putative transcription regulator  ali model follow..  13  1SNAMKKKDMNKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVYLYFKNKQALIDSVYARETNRILSTTDDRLSDSTIDVTTRIRLYVQQVYDYSLANPDS-------TIIQQIKALNGQGMTISAADADPNNIVANLLTAAIDAKVIKQLPVSLHMGVVFSTIHTHTSKGRYAQDQYTFGDIFQMIWDAMK. 194
64 -41.7002zcn_A mol:protein length:192 Biofilm operon icaABCD HTH-type negative transcriptional regulator icaR  ali model follow..  14  2..........MKDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVENCFNYFIDFLLRNH-DDNYSIDGLYQFLFKFIFDVDERYI--------KLYVQLSSAPEALNSEIKHHLQEINTTLHDELIKYYDPTHIA-LDKEDFINLILLFLETWYFRASFSQKFGIIEDSKNRFKDQVY. 177
65 -41.7003pas_A mol:protein length:195 TetR family transcription regulator  ali model follow..  18  2...MRQRDDSKRIAFLEATVREVADHGFSATSVGKIAKAAGLSPATLYIYYEDKEQLLLATFYYVSDQVIDAALDSF-SRGKDLREGLRRQWHTLFRIGLERPEL-------RYHETFTHSAWMTPEIQARNESRAANLLNAVDQGKQSGLIKPVPFPLLETFMFRPIYHLVLQGSFEGTDEHIELAFNMAWDAVA. 190
66 -41.6001zkg_A mol:protein length:212 transcriptional regulator, TetR family  ali model follow..  15  1.MGSDKIVLSKRDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYMSVTEKLQKEFENFLMKRNRDIFDFMERWIEKKLEYSASHP------EADFLITLVSVDEGLRKRILLDLEKSQRVFFDFVREKLKDLDLADVTEEIALKFLMWFFSGFEYQGKPELLKRDMNTLVEEVKVMLRI 199
67 -41.4004mxm_A mol:protein length:203 Transcriptional regulator I2  ali model follow..  21  12.SGQLTDPESARGKLLQTAAHLFRNKGFERTTVRDLASAVGIQSGSIFHHFKSKDEILRAVMEETIHYNTAMMRASL-EEASTVRERVLALIRCELQSIMGGSGEA---MAVLVYEWRSLSAEGQAHVLALRDVYEQIWLQVLGEAKAAGYIRG-DVFITRRFLTGALSWTTTWFRAQGSLTLEELAEEALLMVLK. 201
68 -41.3003him_A mol:protein length:211 Probable transcriptional regulator  ali model follow..  19  7GAVAELGTSKAAARIRAAAIEVFAAKGYGATTTREIAASLDMSPGAVYPHYKTKESLLYAISLEGHHSVLAAITAAD-FPDIAAPDRLMSTVTAYVTWHADNRAS----ARVGQYELRSLSPEHFAIIADIRRSTTKVFTRIIEAGATAGDFHPFDIEAAALAITSLGIDVSRWFPSHTYSDPRIIAARYVELALR. 197
69 -41.1002ras_A mol:protein length:212 Transcriptional regulator, TetR family  ali model follow..  16  1GMASSTEHDAMRARLVDVAQAIVEERGGAGLTLSELAARAGISQANLSRYFETREDLMEAIADYWFHPMVEIMEDVL-ASDLPPRRKMYEFFARRFVVMRRKWEA-------KLQTYIEVGNDYFEQVRSYIDLADHYLGEIIGEAMSDGAFSGLEVDETISLVNQMCAPYCALNTMTTFMELSEDKLARIVDAV.. 192
70 -41.0004mo7_A mol:protein length:212 Transcriptional regulator I2  ali model follow..  21  21.SGQLTDPESARGKLLQTAAHLFRNKGFERTTVRDLASAVGIQSGSIFHHFKSKDEILRAVMEETIHYNTAMMRASL-EEASTVRERVLALIRCELQSIMGGSGEA---MAVLVYEWRSLSAEGQAHVLALRDVYEQIWLQVLGEAKAAGYIRG-DVFITRRFLTGALSWTTTWFRAQGSLTLEELAEEALLMVLK. 210
71 -41.0003dcf_A mol:protein length:218 transcriptional regulator of the TetR/AcrR family  ali model follow..  20  22GHTRGRTGNDRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIYYYFKSKEDVLFAIVNSIVDEALERFHAIAAGPG-SPGERIHALLVEHTRTILRNLDA----NTLFYNERGLLSPEREREMRKREREYTEIMQRLYAEGVATGELLDVDPTVATATLLGAAIWTYRWYDPEGRLSADEVVEQITRLLLN. 212
72 -41.0005eyr_A mol:protein length:228 EthR  ali model follow..  16  20.RTARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPDTDRENMWRTGINVFFETFGSHK------VTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPTLPAHELATALNLMNERTLFASFAGEQPSPEARVLDTLVHIW.. 211
73 -41.0004gct_A mol:protein length:196 Nucleoid occlusion factor SlmA  ali model follow..  16  3....GNKKINRREEILQALAEMLSNEGASRITTAKLAKQVGVSEAALYRHFPSKTRMFEGLIEFIEESLMSRINRIFDEEK-DTLNRIRLVMQLLLAFAERNPGLTRILSGH---ALMFENERLRDRINQLFERIETSLRQILRERKLREGKSPVDENILAAQLLGQVEGSLNRFVRSDFKYLPTANFDEYWALL.. 191
74 -40.9005haw_A mol:protein length:196 Nucleoid occlusion factor SlmA  ali model follow..  16  1..AEKQAKINRREEILQALAEMLENEGASRITTAKLAKQVGVSEAALYRHFPSKTRMFEGLIEFIEESLMSRINRIFDEEK-DTLNRIRLVMQLLLAFAERNPGLTRILSGH---ALMFENERLRDRINQLFERIETSLRQILRERKLREGKSPVDENILAAQLLGQVEGSLNRFVRSDFKYLPTANFDEYWALL.. 191
75 -40.8004x1e_A mol:protein length:220 HTH-type transcriptional regulator RutR  ali model follow..  16  11..KRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAF--REDFAPLAAIKEYIRLKLEVSRDYPQASRL----FCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIAASTQ-EAVTGATLRDEVFFNQTVENVQRII.. 205
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.