current user: public
If you have questions about the server, please let us know.

Query: 3rf9_A mol:protein length:404 Ribosomal RNA large subunit methyltransferase N, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .
# Score Template Links and tools%idFirst MSEQLVTPENVTTKDGKINLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQGEAIDIKAVGNSSSVDKLAAALELast
1 -126.0003rf9_A mol:protein length:404 Ribosomal RNA large subunit methyltransferase N  ali model  100  1MSEQLVTPENVTTKDGKINLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQGEAIDIKAVGNSSSVDKLAAALE 398
2 -22.6003c8f_A mol:protein length:245 Pyruvate formate-lyase 1-activating enzyme  ali model follow..  20  8......................................................................................................SFESCGTVDGPGIRFITFFQ-GCLMRCLYCHTWDTHGGKEVTVEDLMKEVVTYRHFMNASG-------GGVTASG-GEAILQAEFVRDWFRACKKEG-------HTCLDTNGFVRVIDELLEVTDLVM-LDLKQMNDEIHQNLVGVSNHRTLEFA--------KYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNKIELLPYHELGKHKWVPPKKETMERVKGILEQYGHKVMF....................................................... 245
3 -16.9002yx0_A mol:protein length:342 radical sam enzyme  ali model follow..  13  15.........................................................QANPNMPKEVAELFRKQ--YEIVGRHSGVKLCHWLKKSLTEGRFCYKQKFYGIHSHRCLQMTPVLAWCTHNCIFCWRPMENFLGT-DPAFIVEESIKAQRKVDKKKFEEAWNPTHAAISLSGEPMLY-PYMGDLVEEFHKRG-------TTFIVTNGTIPERLEEMIKEDKQLYVSITAPDIETYNSVNIPMIPDGWERILRFLELMRDL----PTRTVVRLTLVKGENM--HSPEKYAKLILKARPFVEAKAYMFVGYSRNNMPSHQDIREFAEALVKHLPGYHIEDEY................................................... 315
4 -16.7003can_A mol:protein length:182 Pyruvate-formate lyase-activating enzyme  ali model follow..  15  6...........................................................................................................................................................................GVTFCG-GEPLLHPEFLIDILKRCGQQG-------HRAVDTTLLARTVDEVMRNCELLL-IDLKSMDSTVHQTFCDVPNELILKNI--------RRVAEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLP-IINLLPYHDIGKGKHATPSEEVQQQCIQILTDYGLKATI....................................................... 180
5 -16.6005wgg_A mol:protein length:453 Radical SAM domain protein  ali model follow..  15  18................................................VVDVNSGAVHVVDDISFDILDYYKNFTAGEIKNKLAHKYNADEIDEALREIESLEAEGLLFSKSVVKALCLHISHDCNLRCKYCSTGNFGGQRNMMSLEVGKKAIDF------ISESGNRKNLEIDFFG-GEPMMNFDVVKGIIEYARQKEKEHNKNFRFTLTTNGLNDENIKYINENMQNIVLSIDGRKEVNDRMRIRIDGSGCYDDILPKFKYVAESRNQDNYYVRGTFT-----RENMDFSNDVLHLADEGFRQISVEPVVAAKDSGYDLREED......................................................................... 300
6 -15.9006djt_A mol:protein length:331 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase  ali model follow..  16  11.........................................................RGSHMIPEEIYKILRK---------QRYQIDGHTAVKLCGWVRKKMLEDKNC-ETHRCIQCTPSVIWCQQNCIFCWRVLPRDIGI-EPEVVYEKILAVLDRVGEKKFKEALEPKHVAISLSGEPTL-YPYLDELIKIFHK-NGF-----TTFVVSNGIL--TDVIEKIEPTQLYISLDAYDLDSYRRICGGKKE-YWESILNTLDIL-----KEKKRTCIRTTLIRGYNDDILKFVELYERAD----FIELKSYMHVGYSQ-DMLQHDEILKLAKMLDEN--RVALLQNENRKIN---PKL........................................ 325
7 -14.3005vsl_A mol:protein length:318 Radical S-adenosyl methionine domain-containing protein 2  ali model follow..  11  2......................................................................................KEQPQVRGELEETQETQEDGNSTQRTTPVSVNYHFTRQCNYKCGFCFH-TAKTSFVLPLEEAKRGLLLLKQA----------GLEKINFSG-GEPFLRGEYLGKLVRFCKEELAL----PSVSIVSNGIRERWFKDYGEYLDILAISCDSFDEQVNALI---GRGQGKKNHVENLQKLRRWCRDYKVAFKINSVINRNVDEDMNEHIKALSPVRWKVFQCLLIEGENSGEDALREAERFLIEEFETFLERH............................................................. 240
8 -14.3002a5h_A mol:protein length:416 L-lysine 2,3-aminomutase  ali model follow..  14  20.............................................WRWQVRNRIETVEELKKY-AQCVKSLRMAITPYYLSLIDPNDPNDPVRKQAIEDTDSPVPGLTHRYPDRVLLLITDM--CSMYCRHCT-------RRRFAGQSDDSMPMERIDKAIDYIRNTPQVRDVLLSG-GDALLTLEYIIAKLREIPHVEIVRIGSRTPVVLPQRITPELVNMLKKYH-PVWLNTHFNHPN---------------EITEESTRACQLLADAGVPLGNQSVLLRGVNDCVHVMKELVNKLV----KIRVRPYDLSLGLEHFRTPVSKGIEIIEGLRGH-TSGYCVPTFVVDAPGGGGKT........................................ 338
9 -13.3006b4c_A mol:protein length:298 Viperin  ali model follow..  11  12...................................................................................................................SVNYHFSRKCNKECLFCFH-TATTSHVEKPENAKRGLTLLKQA----------GMKKINFAG-GEPFLYPKFLGEMIDFCKETLQL----ESVSIVTNGVKEQFLQKHGRNIDILAVSCDSFNEATNIKI-------GSGDNVQKLYEIGSWCQKYDIKFKLNTVVNK--FNHLEDMNDHLNALQPFRWKFQVLIVTGENDSDKTLRNAHSLDEFDRFCERHSSQTCLVPEPNRLMAKSYLIL........................................ 238
10 -12.6004k36_A mol:protein length:392 Anaerobic sulfatase-maturating enzyme  ali model follow..  13  5..................................................................................................................SLLIKPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRD--EVLESMVKRVLNEANGHCSFAFQG-GEPTLAGLEFFEKLMELQRKHNYKNLKIYNSLQTNGTLESWAKFLSENKFLVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILCVVT-------SNTARHVNKVYKYFKEKDFKLQFINLDPLYEEKGKYNYSLKPKDYTKFLKN.............................................................. 220
11 -12.5001tv7_A mol:protein length:340 Molybdenum cofactor biosynthesis protein A  ali model follow..  16  16....................................................................................................................LRLSVTDRCNFRCDYCMPKEVFGDDFVFLPK--NELLTFDEMARIAKVYAELGVKKIRITG-GEPLMR-RDLDVLIAKLNQIDGI----EDIGLTTNGLKKHGQKLYDAGLRRINVSLDAIDDTLFQSI--NNRNIKATTILEQIDYATSIG-----NVKVNVVIQKGIND--DQIIPMLEYFKDKHIEIRFIEFMDVGNDNWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVASTCTRAR....................................... 268
12 -11.9004njg_A mol:protein length:230 7-carboxy-7-deazaguanine synthase  ali model follow..  11  22...............................................................................................IFYTLQG--EGANA---GRPAVFCRFA-GCNLWSGREEDDGENGGKFKDADALVATIAGLWPA--------GEAHRFVVCTG-GEPMLQLDQPL--VDALHAAG-------GIAIETNGSLPVLESID------ICVSPKADAPLVVTKGNELKVVIPQDNQ--------RLADYAKLDFEYFLVQPMDGPSRDLNTKLAIDWCKRHP-QWRLSM........................................................................................ 215
13 -11.8004m7t_A mol:protein length:270 BtrN  ali model follow..  14  21...................................................................................................................MIEVEVNSQCNRTCWYCPNSVSK-ETGEMDPALYKTLM--------EQLSSLDFAGRISFHFYGEPLLC-KNLDLFVGMTTEY------RARPIIYTNGDFKRLQTLTELGIQKFIVTQHAGAKHKFRGV......................................................................................................................................................... 141
14 -11.7004m7s_A mol:protein length:269 BtrN  ali model follow..  14  7...................................................................................................................MIEVEVNSQCNRTCWYCPNSVS--ETGEMDPALYKTLM--------EQLSSLDFAGRISFHFYGEPLLC-KNLDLFVGMTTEY------RARPIIYTNGDFKRLQTLTELGIQKFIVTQHAGAKHKFRGV......................................................................................................................................................... 127
15 -11.4005v1q_A mol:protein length:459 Radical SAM  ali model follow..  13  122...................................................................................................................ELVIYPSMYCDLKCGFCFLANREDRNAKPAKDWERILRQAKDN----------GVLSVSILG-GEPTRYFD----IDNLLIACEELKI---KTTITTNAQLSTVEILAKSKYITPVLSLQTLDSKLNFELMGVRPDRQIKLA--------KYFNEVGKKCRINAVY---TKQSYEQIIELVDFCIENKIDFSVANYSEVTGYT-KKYDLADLRRLNEYVTD.............................................................. 319
16 -11.2005tgs_A mol:protein length:263 7-carboxy-7-deazaguanine synthase  ali model follow..  14  47...........................................................................................................................GCDYSCSWCDSSAKKDIRWMTAEEIFAELKDIGG----------DAFSHVTISG-GNPALL-KQLDAFIELLKENN-------RAALETQGTVY---QDWFTLIDDLTISPKPPSSKMVTNF---------QKLDHILTSLQENDRQHAVSLKV-------VIFNDEDLEFAKTVHKRYPGIPFYLDVHTTDDQSLIAHLLGKYEALVDKVAVDAELNLVRNKRG.................................................. 256
17 -10.2003t7v_A mol:protein length:350 methylornithine synthase PylB  ali model follow..  13  11................................................................DSLGDKVIEGYQLTDNDLRTLLSLESKEGLERLYSAARKVRDHYFGNRVFLNCFIYFSTYCKNQCSFCYYNCRN-RYRLTMEEIKETCKTLKG----------AGFHMVDLTMGEDPYYDPNRFVELVQIVKEELGLPIMISPGLMDN----ATLLKAREKGANFLALYQETYDTELYRKLRV---GQSFDGRVNARRF------AKQQGYCVEDGILTGVGNDIESTILSLRGMSTNDPDVRVMTFLPQEGTPLEGFRDKSNLSELKIISVLRL........................................................... 267
18 -9.9204rtb_A mol:protein length:477 HydG protein  ali model follow..  12  42................................................................SQIIQKLQKGERLSLIEAGIAFANDTEELDQILFWQARKVKEEIYGKRIVLFAPLYLSNICINNCSYCSFRREN-RVRLSLEEAVDEAKAIRE----------MGHTRILLVMGEEPDKTLSYLEEIIPAIYSE----VDIRRINVNIAPLTKGYERLKKLKIGTYQLFQESYNPEVYREVHLDGPKTNFLWRLNAVERAIEA-------DDIGIGALFGLGDPLFELLGVIAHADYLKKKVSVPRLKPALNSVFSNDYKISDHKFKKIVALLRI........................................................... 309
19 -9.7404fhc_A mol:protein length:368 Spore photoproduct lyase  ali model follow..  8  1........................................................MKPMSDYDIPTTENLYFQFVPKLVYFEPEALSYPLGKELYEKFTQMGIKIRETTSHNQVRYAIPLATGCMGHCHYCY-----LQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAACDIVGIDHLTHSLKKAIE----ATDYGRLRFVTYEHVDHLLDARHNGKTRFRFSINSR---------------------YVINHFEPGTSSFDGRL--------------AAARKVAG--AGYKLGFVVAPI--YRHEGWERGYFELFQELARQLEGMDLS.......................................................... 284
20 -9.7206c8v_A mol:protein length:394 Coenzyme PQQ synthesis protein E  ali model follow..  21  23...................................................................................................................GLLAELTHRCPLRCPYCSNELDRRSAELDTQTWLRVLTEAAGL----------GVLHVHLSG-GEPTARPD----IVEITAKCAELGL---YSNLITSGVGAKLDALYDVGLDHVQLSVQGVDAANAEKIGGLKNAQ--PQKMQFAARVTELGLPLTLNSVIHRGNIHEVPGFIDLAVKL....................................................................................................... 187
21 -9.6804jy8_A mol:protein length:358 FEFE-HYDROGENASE MATURASE  ali model follow..  12  10............................................................ASTGREILEKLERREFTREVLKEALSINDRGFNEALFKLAD-EIRRKYVGDEVHIRAIIEFSNVCRKNCLYCGLRRDN-RYRMTPEEIVERARLAVQ----------FGAKTIVLQSGEDPYYMPDVISDIVKEIKKMG-------AVTLSLGEWPREYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAG--------SMVGLPGQTIDDLVDDLLFLKEHDFDVGIGPFIPHPDTPLANEKKGDFTLTLKMVATTAMGTIVPGGREITLRCGANVIMPNWTPSP................................ 308
22 -9.5405fep_A mol:protein length:358 [FeFe] hydrogenase maturase subunit HydE  ali model follow..  12  10............................................................ASTGREILEKLERREFTREVLKEALSINDRGFNEALFKLAD-EIRRKYVGDEVHIRAIIEFSNVCRKNCLYCGLRRDN-RYRMTPEEIVERARLAVQ----------FGAKTIVLQSGEDPYXMPDVISDIVKEIKKMG-------AVTLSLGEWPREYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAG--------SMVGLPGQTIDDLVDDLLFLKEHDFDVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRI........................................................... 268
23 -9.3801r30_A mol:protein length:369 Biotin synthase  ali model follow..  9  6..........................................................DIPTTENLYFQGSAHRPRWTLSQVTELFEKPL--LDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYC-----PQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDPYLEQMVQGVKAMGL-----EACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSG---------GIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQA.................................. 291
24 -9.3404u0o_B mol:protein length:296 Lipoyl synthase 2  ali model follow..  10  1........................................................MALSRPLPSWLRKPLGKASEISTVQRLVRQYG-------IHTICEEGRCPNRGECYGQKTATFLLLGPCTRACAFCQVEKGHAPAAVDPEEPTKIAAAVAT----------LGLRYVVLTSVAQGAGQFVATMAAIRQRCPGTEIEVLSPDFRMDRGRLSDCIAQIVAAQPACYNHNL----ETVRRLQGPVRRGATYESSLRVLAT----VKELNPDIPTKSGLMLGLGETEAEIIETLKDLRRVGCDLTLGQYLPPSLSHLKYWTPEEFNTLGNIARELGFSHVVRSSYHAAEGG............................................. 290
25 -9.1305ul2_A mol:protein length:744 OxsB protein  ali model follow..  12  228........................FERYPSLLICDKEGEYTLRDLIKMLKKE--LKLDEVNGISYVDESGE-------------VKHNVAETVNFKEEVPTPSLDILGEISKFRGALTLETSRGCDYSCTFCPRDHKLRSRPLSVEQTLKQLDDILRAGKHFNIKPHIYMADEEFIGELPNGTEAQRIIDICEGLLKREKFDFAARADSVYEPKRTKEWHYCALAGADRIFIGVESGSNQQ---LKRYGKGTTSEQNIIALRLVSALG-----NLRIGFIMFDQLMKGLDNLKENLDFLERTDALMKPIDIGDMTYEELYDKLLND........................................................................ 520
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 3 0 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.