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Query: 3rzz_A mol:protein length:446 Hydroxyethylphoshphonate Dioxygenase (PhpD), from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GSHMRIDPFKLAHWMNARKYTAAQTADLAGLPLDDLRRLLGDEANEPDPAAATALAEALSVEPSQLAADAHRNLTVVHKSAEEMHASRRPIQRDGIHFYNFYTLAAPEGRVAPVVLDILCPSDRLPALNNGHLEPAITVNLGPGDINGRWGEEITPQTWRVLHANHGGDRWITGDSYVEPSYCPHSYSLAGDAPARIVSYTAQSNISPLMTEANNWSTGAFEEALKALSGKVSAGSVLDLFLARRAHTRTSAAEAAGVPPADLEAALRSPASETGLTVLRTLGRALGFDYRVLLPADDQHDGVGKTWTTIEDSRRSRRTFGTYEAASMASAAHLPDLVGSFLRVDADGRGADLIDHAENHYVVTEGRLTLEWDGPDGPASVELEPDGSAWTGPFVRHRWHGTGTVLKFGSGAHLGYQDWLELTNTFEPAATLRRGRRDLAGWGYDNLast
1 -132.0003rzz_A mol:protein length:446 Hydroxyethylphoshphonate Dioxygenase (PhpD)  ali model  100  1GSHMRIDPFKLAHWMNARKYTAAQTADLAGLPLDDLRRLLGDEANEPDPAAATALAEALSVEPSQLAADAHRNLTVVHKSAEEMHASRRPIQRDGIHFYNFYTLAAPEGRVAPVVLDILCPSDRLPALNNGHLEPAITVNLGPGDINGRWGEEITPQTWRVLHANHGGDRWITGDSYVEPSYCPHSYSLAGDAPARIVSYTAQSNISPLMTEANNWSTGAFEEALKALSGKVSAGSVLDLFLARRAHTRTSAAEAAGVPPADLEAALRSPASETGLTVLRTLGRALGFDYRVLLPADDQHDGVGKTWTTIEDSRRSRRTFGTYEAASMASAAHLPDLVGSFLRVDADGRGADLIDHAENHYVVTEGRLTLEWDGPDGPASVELEPDGSAWTGPFVRHRWHGTGTVLKFGSGAHLGYQDWLELTNTFEPAATLRRGRRDLAGWGYDN 446
2 -96.3006b9s_A mol:protein length:457 Methylphosphonate synthase  ali model follow..  16  10DSYLIRSGNNFLGILNDIKRRPEDAANELGVSIEEINSIISGK-QKISPSLIEKAVNIWPVNERDFYVSDDCSSGILIMTSQDSIKSSRIMERAGKPYYEYRDTAMSAPFRPEWILELCKPENPKAQWNNGHFMHQFTYFIGEVNFYYKDPEG-----------KKHVAIMNTGDSMYITPFTPHTFTTRDGASQNGLILALTYGSKLTGDIQQELSDCGSQYALDFTNHENASLSLLEYYFELSNLTKEKFAKRTNFSMETLADFFTK-KKLPTFDELKIIAKALNVNSRDLMPNDLTESKVIVKTHDQCDHWKYPES-GNYEFYELASTTALPHSKAFEIDVSSSEDLNLKVGLHQYVYNIGDSALTINWNYENKTYQKSLNPGDSAYIKPFVPHNFRGNGKILILRIGGKISGDSQRELSFVGR--ENTQRAISETMQWFDPK 453
3 -88.6006b9r_A mol:protein length:450 Hydroxyethylphosphonate dioxygenase  ali model follow..  17  11AARAARAAALLRAAANDLKRNDRAAEADLGLPPGSFGDYVSGR-LPITWDLISRAAQAWPLNERDLLIHNDTPQGLRMMRVKESEASSRIIERGGGPYYEYRDTAMSRASYRPEWISMLDPDNPLVEWNKGHLLYQFTYFVGPVNYYFRSGGR------------SHCVPMNTGDSVWGLPFAPHSFTARSADEPAYILALTYGGELTGDAQ-RELATFGRAVTSSLALTPGDHGAMLRSVMAARLTTVTELADRSGLKTDRVAALCRT-PARAEWPELSALAEALGVSVRELLVPHTTTEARIQPGRTASRWSYPGPDAPAYRFTQLAGDPLHPHTTSLAVDVLTARPDAPPPTYQHQYLYVLEQPVSVRWRYNGEQYDGRLEPGDSAYVIPGIEFSLSAEKELLMLRIGGSATPDVRFALGAMPD--GAIGRYIAEDRLWY... 450
4 -56.2001zz6_A mol:protein length:198 Hydroxypropylphosphonic Acid Epoxidase  ali model follow..  18  5KTASTGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGALTPPAGNDDGVIIQMPDERPILKGVRDNVDYYVYNCLVRTKRAPSLVPLVVDVLTDNPDDAKFNSGHAGNEFLF-VLEGEIHMKWGDK----------ENPKEALLPTGASMFVEEHVPHAFTAAGTGSAKLIAVNF.................................................................................................................................................................................................................................................... 198
5 -54.0005u55_A mol:protein length:190 (S)-2-hydroxypropylphosphonic acid epoxidase  ali model follow..  13  2.........DVRTLAV-GKAHLEALLATRKMTLEHLQDVRHDQVYFDGLEHLQNVAQYLAIPLSEFFVGSDLDDGVKIARRNGGFKREEIRGGVHYYTYEHLVTTNQDPGLMALRLDLHSDDEQPLRLNGGHGSREIVY-VTRGAVRVRWVGD---------NDELKEDVLNEGDSIFILPNVPHSFTNHVGGAKSEIIAINYG.................................................................................................................................................................................................................................................. 190
6 -48.2001y9q_A mol:protein length:192 transcriptional regulator, HTH_3 family  ali model follow..  14  12......IANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGE-SSPTIATLWKIASGLEASFSAFFAND-----------PQLLSSERSFPDDLNMKIHTLFPYAADTGLEIFEITLLDHHQQMSS-PHALGVIEYIHVL---------------EGIMKVFFDEQWHELQQGEHIRFFSDQPHGYAAVTEKAVFQNIVAYPRR................................................................................................................................................................................................................................................. 182
7 -37.6005uk3_A mol:protein length:176 Uncharacterized protein  ali model follow..  9  4.........................................................................................................................................................................................................................YSRLFQISSANYARQIMSNQFIKAKESKGLTYQQMAQLLSVNKVWLTSVLHG-QNCCDIQLAHRICDTLGISHEYANELTSIPLRGNQNIINDPLIYRFNELFKVYG--SSLRGIIHEEFGDGIMSA-IDCKIDVTKNEQSRVILRIDGKFL-------PYYKGQLDAGENLYFQSA.................................................... 169
8 -29.6001b0n_A mol:protein length:111 PROTEIN (SINR PROTEIN)  ali model follow..  14  1.....MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETE.................................................................................................................................................................................................................................................................................................................................................................................... 69
9 -29.6004y42_A mol:protein length:156 Cyanate hydratase  ali model follow..  14  1............................................................................................................................................................................................................................MTQSLHYSSPRETLTDTIMMAKIRKNLTFEAINQGTGLSLAFVTAALLG-QHPLPEQAARVVAEKLDLDEDAIRLLQTIPLRGSIPGGVPTDPTIYRFYEMVQIYGSTLKALVHEQFIISAINFKLDIKKVPDPDGGERAVITLDGKY.............................................................................. 150
10 -29.5003qq6_A mol:protein length:78 HTH-type transcriptional regulator sinR  ali model follow..  14  3....SMIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETE.................................................................................................................................................................................................................................................................................................................................................................................... 72
11 -29.3005woq_A mol:protein length:120 Transcriptional regulator ClgR  ali model follow..  20  9....EVIGDVLRNARTDQGRTLREVSDAARVSLGYLSEVERGR-KEASSELLSAICDALDVPLSRVLTDAGES..................................................................................................................................................................................................................................................................................................................................................................................... 76
12 -28.5003f51_A mol:protein length:117 Clp gene regulator (ClgR)  ali model follow..  10  27....EALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRK-EVSSELLASVCHALGASVADVLIEAAGSMALQAAQEDLARVLE...................................................................................................................................................................................................................................................................................................................................................................... 109
13 -28.1001sef_A mol:protein length:274 conserved hypothetical protein  ali model follow..  6  25.......................................................................KKDNYAIIPHDGLVQNAVPGFENVD--ISILGSPKLGATFVDYIATFHKNGQQTTG-FGGDGIQTLVYVI---------------DGRLRVSDGQETHELEAGGYAYFTPEMKMYLANAQEADTEVFLYKKRYQPLAGHQPYKVVGSIHDQQPEEYEGMTDVLLWSLLPKEFDFDMNMHILSFEPG-----------------------------------------------------------------------------------------ASHAYIETHVQEHGAYLISGQGMYNLDNE----WYPVEKGDYIFMSAYVPQAAYAVGR.......................................... 246
14 -27.2003b7h_A mol:protein length:78 Prophage Lp1 protein 11  ali model follow..  14  6....EFVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLGISVHDFFDFPPYNE.................................................................................................................................................................................................................................................................................................................................................................................... 75
15 -27.1005tk5_A mol:protein length:290 3-hydroxyanthranilate 3,4-dioxygenase  ali model follow..  13  53...................................................................................................................................EEGEEVFYQL-EGDMVLRVLEQ-----------KHRDVVIRQGEIFLLPARVPHSPQRFANTVGLVVERRRLE---------------------TELDGLRYYVGDTMDVLFEKWFYCKDLGTQLAPIIQEFFSSEQYRTGKPIPDQLLK----------------EPPFPLSTRSIMEPMSLDAWLDSHHRELQAGTPLSLFGDTYETQVIAYGQGSSEGLRQNVDVWLWQLEGSSVVTMGGR----RLSLAPDDSLLVLAGTSYAWERTQGSVALSV.................................... 279
16 -26.5002ofy_A mol:protein length:86 Putative XRE-family transcriptional regulator  ali model follow..  17  15....QRLGELLRSAR--GDMSMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVAAVVTFGP.................................................................................................................................................................................................................................................................................................................................................................................... 82
17 -26.0003kxa_A mol:protein length:141 Putative uncharacterized protein  ali model follow..  21  60...LKAGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQ-SLQDKTVQKLANALGVSPLEVRAAFERRYEYM................................................................................................................................................................................................................................................................................................................................................................................. 132
18 -25.9002p5t_A mol:protein length:158 Putative transcriptional regulator PezA  ali model follow..  8  1.....MIGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGT-SSVSTELIDIICQKFNVSYVDIVGEDKMLN.................................................................................................................................................................................................................................................................................................................................................................................... 68
19 -25.7003fe5_A mol:protein length:285 3-hydroxyanthranilate 3,4-dioxygenase  ali model follow..  13  48...................................................................................................................................EEGEEVFYQL-EGDMLLRVLER-----------KHRDVVIRQGEIFLLPAGVPHSPQRFANTVGLVIERRRLKTELDGLR-VGDTTDVLFEKWFYCEDLGTQLAPIIQEFFSSEQYRTGKPNPDQLLKEPPFPLSTRSVMEPMCLEAWL--------------------------------------DGHRKELQAGTPLSLFGDTYESQVMVHGQGSSEGLRRDVDVWLWQLEGSSVVTMEG----QRLSLTLDDSLLVPAGTLYGWERGQGSVALSV.................................... 274
20 -25.5001rc6_A mol:protein length:261 Hypothetical protein ylbA  ali model follow..  8  4................................................LNNVTGYREDLLANRAIV-----KHGNFALLTPDGLVKNIIPGFENCD--ATILSTPKLGASFVDYLVTLHQNGGNQQG-FGGEGIETFLYVI---------------SGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPG-----------------------------------------------------------------------------------------ASHGYIETHVQEHGAYILSGQGVYNLDNN----WIPVKKGDYIFMGAYSLQAGYGVGR.......................................... 243
21 -25.4003vk0_A mol:protein length:114 Transcriptional regulator  ali model follow..  14  19...RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRW-NIALSNIEKMAAALGVAAYQLLLPPQERLKLMTNSADTRQMPSE..................................................................................................................................................................................................................................................................................................................................................................... 103
22 -25.3003g5g_A mol:protein length:99 Regulatory protein  ali model follow..  8  20...LSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSR-NLTIKSLELIMKGLEVSDVVFFEMLIKE..................................................................................................................................................................................................................................................................................................................................................................................... 88
23 -25.2001dw9_A mol:protein length:156 CYANATE LYASE  ali model follow..  14  7..................................................................................................................................................................................................................................NRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLG-QQALPADAARLVGAKLDLDEDSILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFIISAINFKLDVKKVADPEGGERAVITLDGKY.............................................................................. 150
24 -25.1003fya_A mol:protein length:99 Regulatory protein  ali model follow..  8  20...LSKVSFVIKKIRLEKGMTQEDLAYKSNLDATYISGIERNSR-NLTIKSLELIMKGLEVSDVVFFEMLIKE..................................................................................................................................................................................................................................................................................................................................................................................... 88
25 -25.0005y69_A mol:protein length:151 chain A  ali model follow..  12  2....SMTIKLLDEFLKKHDLTRYQLSKLTGISQNTLKDQNEKPLNKYTVSILRSLSMISGLSVSDVLFELEDIE.................................................................................................................................................................................................................................................................................................................................................................................... 71
26 -24.8003ivp_A mol:protein length:126 Putative transposon-related DNA-binding protein  ali model follow..  12  9..DFRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQ-HPSLQVLYDLVSLLNVSVDEFFLPASSQV.................................................................................................................................................................................................................................................................................................................................................................................... 79
27 -24.7002b5a_A mol:protein length:77 C.BclI  ali model follow..  15  8...KRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDR-NISLINIHKICAALDIPASTFFRKMEEEN.................................................................................................................................................................................................................................................................................................................................................................................... 77
28 -24.7004pu3_D mol:protein length:118 Toxin-antitoxin system antidote transcriptional repressor Xre family  ali model follow..  11  40..NQQSLGLLIKERRKSAALTQDVAAMLCGVTKKTLIRVEKGE--DVYISTVFKILDGLGIDIVSAQTSDTETNG................................................................................................................................................................................................................................................................................................................................................................................... 110
29 -24.5006b8w_A mol:protein length:95 XRE family transcriptional regulator  ali model follow..  6  5..................................................................................................VKPLFPWDETLKFDHFSIILAPGALSEST-PHEAGVIEHVVVI---------------SGELEMKIDGEWRTLYPDQGVRFAGDKPHAYRNSSSRPVHFHSLIHYPR................................................................................................................................................................................................................................................. 95
30 -24.5004ia8_A mol:protein length:82 Regulatory protein  ali model follow..  8  9...LSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTAISGIERNSR-NLTIKSLELIMKGLEVSDVVFFEMLIKE..................................................................................................................................................................................................................................................................................................................................................................................... 77
31 -24.5004f8d_A mol:protein length:82 Regulatory protein  ali model follow..  10  9...LSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSA-NLTIKSLELIMKGLEVSDVVFFEMLIKE..................................................................................................................................................................................................................................................................................................................................................................................... 77
32 -24.5004i6t_A mol:protein length:82 Regulatory protein  ali model follow..  8  9...LSKVSFVIKKIRLEKGMTQEDLAYKSNLDRAYISGIERNSR-NLTIKSLELIMKGLEVSDVVFFEMLIKE..................................................................................................................................................................................................................................................................................................................................................................................... 77
33 -24.3004i6u_A mol:protein length:82 Regulatory protein  ali model follow..  8  9...LSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTFISGIERNSR-NLTIKSLELIMKGLEVSDVVFFEMLIKE..................................................................................................................................................................................................................................................................................................................................................................................... 77
34 -24.3004fn3_A mol:protein length:82 Regulatory protein  ali model follow..  10  9...LSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSR-NLTIKALELIMKGLEVSDVVFFEMLIKE..................................................................................................................................................................................................................................................................................................................................................................................... 77
35 -24.3002wiu_B mol:protein length:88 HTH-TYPE TRANSCRIPTIONAL REGULATOR HIPB  ali model follow..  7  10...PTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNP-DNTTLTTFFKILQSLELSMTLCDAKNASPES................................................................................................................................................................................................................................................................................................................................................................................... 80
36 -24.1001y7y_A mol:protein length:74 C.AhdI  ali model follow..  20  11...LVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQR-NVSLVNILKLATALDIEPRELFC.......................................................................................................................................................................................................................................................................................................................................................................................... 74
37 -24.0001sq4_A mol:protein length:278 Glyoxylate-induced Protein  ali model follow..  9  64..........................................................................................................FAETFSQYIVELAPNGGSDKP--EQDPNAEAVLFVVEGELSLTLQGQ--------------VHAMQPGGYAFIPPGADYKVRNTTGQHTRFHWIRKHYQKVDGVPLPEAFVTNEQDIQPLVMPDTEG------RWSTTRFVDMSDMRHDMHVNIVNFE--------------------------------------------------------------------------------PGGVIPFAETHVMEHGLYVLEGKAVYRL----NQDWVEVEAGDFMWLRAFCPQACYSGGP.......................................... 255
38 -23.9005k98_B mol:protein length:91 Antitoxin HipB  ali model follow..  5  14....TQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNP-DNTTLTTFFKILQSLELSMTLCDTKNASPES................................................................................................................................................................................................................................................................................................................................................................................... 83
39 -23.6003mlf_A mol:protein length:111 transcriptional regulator  ali model follow..  8  14..FQSNAMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDS-TNIKDSLLSKYMSAFNVKYDDIFLGNEYENFVFTNDKKKSIILAFKEKQTS............................................................................................................................................................................................................................................................................................................................................................... 105
40 -22.8004z5h_A mol:protein length:72 Antitoxin HipB  ali model follow..  9  11......LANAMKLVRQQNGWTQAELAKKIGIKQATISNFENNP-DNTTLTTFFKILQSLELSMTLCDAK......................................................................................................................................................................................................................................................................................................................................................................................... 72
41 -22.8003h7j_A mol:protein length:243 Bacilysin biosynthesis protein bacB  ali model follow..  9  29.........................................................................................................TVRGDTEVLMSYVPPHTNVEP---HQHKEVQIGMVV---------------SGELMMTVGDVTRKMTALESAYIPPHVPHGARNDTDQEVIAIDIKRLKADETYTSPEDYFLDIFKTRDLLPGMEVTFF-------------------------------------------------------------------------------------------------VEDWVEIMLAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTVEGC----TVEMKFGTAYFCEPREDHGAINRSESINIFFPPRYNRAKAKKMKA...................... 233
42 -22.7002d40_A mol:protein length:354 putative gentisate 1,2-dioxygenase  ali model follow..  8  3....................SSGSMTDNNQNSREQFYQHISGQNLTPLWESLHHLVPKTPNANCAAYWNYQEIRPLLLESGGLIGAKEAVRRVLVLENPALRGQSSITATLYAGLQLIMPGEVAPS---HRHNQSALRFIV-EGK------------GAFTA-VDGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGLDLPLVNILGCGFAEDYPEEQQP--------------------------VTRKEGDYLPRYAANMLPLRHQTGNSSPIFNYRYDRSREVLHDLTRLGDADEWDGYKMRYVNPV---------------TGGYPMPSMGAFLQLLPKGFASRVARTTDSTIYHVVEGSGQVIIGN----ETFSFSAKDIFVVPTWHGVSFQTTQDSVLFSF.................................... 331
43 -22.5002ewt_A mol:protein length:71 putative DNA-binding protein  ali model follow..  9  6...AKQLGAKLRAIRTQQGLSLHGVEEKSQWKAVVVGSYERGDR-AVTVQRLAELADFYGVPVQELLP.......................................................................................................................................................................................................................................................................................................................................................................................... 71
44 -22.4001gqg_A mol:protein length:350 QUERCETIN 2,3-DIOXYGENASE  ali model follow..  12  11.....................................................................PDHVRPYVIRHYSHARAVT------DTQLYRFYVTGPSSGYAFTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSG---------NETQQTRVLSSGDYGSVPRNVTHTFQIQDP-DTEMTGVIVPGGFEDL---FYYLGTNATDTTHTPYIPSSSDSSSTTGPDSSTISTLQSFDVYAELSFTPRTDTVNGTAPANT-------------------ANALASTAGDPYFIANGWGPKYLNSQYGYQITATQAQDTNYTLSTISMSTTPSTVTVPTWSPGACAFQVQEGRVVVQI---GDYAATELGSGDVAFIPGGVEFKYYSEAYVLFVSSGSDGLDQNLVNGGEEWSSVSF--------ADW.... 350
45 -22.2002phd_A mol:protein length:368 Gentisate 1,2-dioxygenase  ali model follow..  11  3...........NEKLDHESVTQAMQPKDTPELRALYKSFEEESI-IPLWTQLGDLMPIHPKSKAVPHVWKWSTLLRLARKSGELVPVGRGGERRALGLANLGGNAYISPTMWAGIQYLGPRETAPE---HRHSQNAFRFVV-EGE------------GVWTV-VNGDPVRMSRGDLLLTPGWCFHGHMNDTDQPMAWIDGLDIPFSQQMDVGFFEFGSDRVTDYATPNFSRGERLWCHPGLRPLSGLQNTVASPIGAYRWEFTDRALTEQLLLED---------------------------------EGQPATVAPGHAAIRYVNPTTGGDVMPTLRCEFHRLRAGTETATRNEVGSTVFQVFEGAGAVVMNG----ETTKLEKGDMFVVPSWVPWSLQAETQFDLFR----FSDAPIMEALSFMRTKIEGQK............ 368
46 -22.2003op9_A mol:protein length:114 Pli0006 protein  ali model follow..  14  7...QHQFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGE-TKPDIEKLIRLATYFHLSIDELVGYVQEDK.................................................................................................................................................................................................................................................................................................................................................................................... 76
47 -21.9001adr_A mol:protein length:76 P22 C2 REPRESSOR  ali model follow..  17  2..NTQLMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSE-TEPNGENLLALSKALQCSPDYLLKGDLSQTNVAY................................................................................................................................................................................................................................................................................................................................................................................ 76
48 -21.7005j2y_A mol:protein length:80 Regulatory protein  ali model follow..  12  7.TQPQNMAFRAKATRTARRESQETFWSRFGISQSCGSRFENGENLPFPIYLLLHFYIEGQITDRQLADLRGK...................................................................................................................................................................................................................................................................................................................................................................................... 77
49 -21.5004o8b_A mol:protein length:122 Uncharacterized protein  ali model follow..  14  1.....MLGTRLKAARIRAGYSQKQLGMLVGMDSARMNQYERERH-SPNMRTSEQLAMVLQVPMAYLYCPEDELAELILKVSSLTPEFKKELTR................................................................................................................................................................................................................................................................................................................................................................. 91
50 -21.5003f6w_A mol:protein length:83 XRE-family like protein  ali model follow..  13  9NARYQALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAER-RLDVIEFMDFCRGIGTDPYALLSKLEAM..................................................................................................................................................................................................................................................................................................................................................................................... 80
51 -21.5001utx_A mol:protein length:66 CYLR2  ali model follow..  12  1.....MIINNLKLIREKKKISQSELAALLEVSRQTINGIEKNK-YNPSLQLALKIAYYLNTPLEDIFQWQPE...................................................................................................................................................................................................................................................................................................................................................................................... 66
52 -21.4003bs3_A mol:protein length:76 Putative DNA-binding protein  ali model follow..  17  6.NNQQMMLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNK-SQPSLDMLVKVAELLNVDPRQLINGKIK...................................................................................................................................................................................................................................................................................................................................................................................... 75
53 -21.4002xiu_A mol:protein length:66 CYLR2  ali model follow..  12  1.....MIINNLKLIREKKKISQSELAALLEVSRQTINGIEKNK-YNPSLQLALKIAYYLNCPLEDIFQWQPE...................................................................................................................................................................................................................................................................................................................................................................................... 66
54 -21.4001sfn_A mol:protein length:246 conserved hypothetical protein  ali model follow..  8  6..................................................................QTRSALHGSHAVITPETFVRTALAEWPGSAIVLHIAPVVGLGARFVQFTAEMPAGAQAT-----ESVYQRFAFVL---------------SGEVDVAVGGETRTLREYDYVYLPAGEKHMLTAKTDARVSVFEKPYQT-------------------------------------------------------------------------------------------VEGVQAPGVYWGNERENPGYPFEGDDHLIARKLLPDEPAFDFMVSTMSFAPGASPYAEVHYMEHGLLMLEGEGLYKLEEN----YYPVTAGDIIWMGAHCPQWYGALGR.......................................... 229
55 -21.4002ef8_A mol:protein length:84 Putative transcription factor  ali model follow..  14  5DHRYRCLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFER-RLDALELFELLEVVASRLGLPMD.......................................................................................................................................................................................................................................................................................................................................................................................... 71
56 -21.4003lfp_A mol:protein length:98 Csp231I C protein  ali model follow..  17  1.....MLIRRLKDARLRAGISQEKLGVLAGIDEASMNQYEKGKH-APDFEMANRLAKVLKIPVSYLYTPEDDLAQIILTWNELNEQERKRINF................................................................................................................................................................................................................................................................................................................................................................. 91
57 -21.2002kpj_A mol:protein length:94 SOS-response transcriptional repressor, LexA  ali model follow..  17  5.KQKAIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGI-AIPRMGKVQALADYFNINKSDLIEDKKLNID................................................................................................................................................................................................................................................................................................................................................................................... 77
58 -21.2004e2q_A mol:protein length:266 Ureidoglycine aminohydrolase  ali model follow..  7  1.........................................GHMKTNPIYWKATNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVYSPLPDWTNTLGAYLITPATGSHFVMYLAKMKEMSSSGLP---PQDIERLIFVV--------------EGAVTLTNTSSSSKKLTVDSYAYLPPNFHHSLDCVESATLVVFERRYEYL---------------------------------------------------------------------------------------------GSHTTELIVGSTDKQPLLETPGEVFELRKLLPMSVAYDFNIHTMDFQPGEFNVKEVHYNQHGLLLLEGQGIYRL----GDNWYPVQAGDVIWMAPFVPQWYAALGK.......................................... 250
59 -21.2001zug_A mol:protein length:71 PHAGE 434 CRO PROTEIN  ali model follow..  21  1...MQTLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGV--TKRPRFLFEIAMALNCDPVWLQYGTKRGKA................................................................................................................................................................................................................................................................................................................................................................................... 70
60 -21.1003omt_A mol:protein length:73 uncharacterized protein  ali model follow..  15  5..TERKIFNRLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTND-VQPSLETLFDIAEALNVDVRELIVSTKR...................................................................................................................................................................................................................................................................................................................................................................................... 73
61 -21.0002l49_A mol:protein length:99 C protein  ali model follow..  14  5......ISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRS-TPPTDVMMNILQTPQFTKYTLWFMTNQIA.................................................................................................................................................................................................................................................................................................................................................................................... 71
62 -20.9002mez_A mol:protein length:106 Multiprotein Bridging Factor (MBP-like)  ali model follow..  9  8...VTDYYKIIKTAREQLGISQQQLAQKLKVSENIVKRFESGK-LKPTISQARQLEKILGIKLVTPLENNEESEK................................................................................................................................................................................................................................................................................................................................................................................... 78
63 -20.9005jub_A mol:protein length:310 Transcriptional regulator  ali model follow..  13  7......IGLRIKTERERQQMSREVLCLGAELTVRQLIRIEKGE-SLPSLDRLSYIAKRLGKSMTELLDQDNITI.................................................................................................................................................................................................................................................................................................................................................................................... 74
64 -20.9002k9q_A mol:protein length:77 uncharacterized protein  ali model follow..  17  3......LSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSE-TAPVVVKYIAFLRSKGVDLNALFDRIIVNK.................................................................................................................................................................................................................................................................................................................................................................................... 69
65 -20.9001x57_A mol:protein length:91 Endothelial differentiation-related factor 1  ali model follow..  9  14......VGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAI-PNNQVLGKIERAIGLKLRGKDIGKPIEKGPRAKSGPSS.......................................................................................................................................................................................................................................................................................................................................................................... 90
66 -20.8001per_L mol:protein length:69 PROTEIN (434 REPRESSOR)  ali model follow..  16  2......ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGK--TKRPRFLPELASALGVSVDWLLNGTSDSN.................................................................................................................................................................................................................................................................................................................................................................................... 67
67 -20.8001rio_A mol:protein length:98 Repressor protein CI  ali model follow..  11  1.......................................................................................................................................................................................................................MSTKKKPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNG-INALNAYNAALLAKILKVSVEEFSPSIARE.................................................................................................................................................. 84
68 -20.4003rns_A mol:protein length:227 Cupin 2 conserved barrel domain protein  ali model follow..  9  32.........................................................................................................LNQPNSYISLFSLAKDEEITA---EAMLGNRYYYCF---------------NGNGEIFIENNKKTISNGDFLEITANHNYSIEARDN--LKLIEIGEKIGDGNMENKTLKMLESASAFNLAEVVEYQEGKIVSKNLVAKPNLVMTIMSFWKGESLD------------------------------------------------------------------------------------------PHKAPGDALVTVLDGEGKYYVDGK----PFIVKKGESAVLPANIPHAVEAETENFKM...................................... 220
69 -19.9003kz3_A mol:protein length:80 Repressor protein CI  ali model follow..  10  5.................................................................................................................................................................................................................................EQLEDARRLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNG-INALNAYNAALLAKILKVSVEEFSPSIARE.................................................................................................................................................. 78
70 -19.8001v70_A mol:protein length:105 probable antibiotics synthesis protein  ali model follow..  19  24..........................................................................................................QSERMLYDLYALLPGQAQKV---HVHEGSDKVYYALEGEVVVRVGEE--------------EALLAPGMAAFAPAGAPHGVRNESASPALLLVVTAPR.................................................................................................................................................................................................................................................. 104
71 -19.6002h0v_A mol:protein length:338 Quercetin 2,3-dioxygenase  ali model follow..  17  1..................GMKTLCTHSLPKEKMPYLLRSGEGERYLFGRQVATVMANG----------------------------------RSTGDLFEIVLLSGGKGDAFPLHV---------------HKDTHEGILVLDGKLELTLDGE--------------RYLLISGDYANIPAGTPHSYRMQSH-RTRLVSYTMKGNVAHLYSVIG-----------------------------------NPYDHAEHPPYASEEVSNERFAEAAAVADIVFLDEAKPACSAKLAELTELPDGAVPYVLESGEGDRLLTGDQLHRI-VAAQKNTDGQFIVVSSEGPKGDRIVDHYHEHTETFYCLEGQMTMWTDG----QEIQLNPGDFLHVPANTVHSYRLDSKMVGVLVPGLFE............................... 297
72 -19.6001sq8_A mol:protein length:64 dh434  ali model follow..  19  3......MGERIRARRIQLGLNQAELAQKVGVDQQAIEQLENGK--AKRPRFLPELARALGVAVDWLLNGA........................................................................................................................................................................................................................................................................................................................................................................................ 64
73 -19.6005wsd_A mol:protein length:118 Uncharacterized protein tm1459  ali model follow..  6  2........................................................................PSGMILKRAYDVTPQKISTDKVRGVRKRVLIGLKDAPNFVMRLFTVEPGGLIDR---HSHPWEHEIFVL---------------KGKLTVLKEQGEETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCLIPKEGGE............................................................................................................................................................................................................................................... 118
74 -19.5003bu7_A mol:protein length:394 Gentisate 1,2-dioxygenase  ali model follow..  8  3.........................SSSSGLVPRGSHMAPTEIKPEDDILGRARVRDT---ELEAYYDDLAKIETGALWTVANDIEPWEPTPKSAPVHWKWSDLSAACGWLFSGIQTMKAGERAGA---HRHAASALRFIM-EGS------------GAYTI-VDGHKVELGANDFVLTPNGTWHEHGILESGTECIWQDGLDIPLTNCLEEVHPNDYQTTDIPLNDSPLTYGGPALLPQLDKWDKPYSPLLKYSWEPTYEALLNYAKASDGSPYDGLILRYTN------------------------------------------PQTGGHPMLTMGASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIVGG----KRFDWSEHDIFCVPAWTWHEHCNTQE.......................................... 351
75 -19.5002r63_A mol:protein length:63 REPRESSOR PROTEIN FROM BACTERIOPHAGE 434  ali model follow..  19  2......ISSRVKSKMIQLGLNQAELAQKVGTTQQSIEQLENGK--TKRPRFLPELASALGVSVDWLLNGT........................................................................................................................................................................................................................................................................................................................................................................................ 63
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 5 1 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205