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Query: 3sy6_A mol:protein length:291 Fimbrial protein BF1861, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GEQEDKVSGEKTLAVVSASSDDRPSTRGIINDNTYALGVFRTTANTYAPLYNVKHIYSGGEWGADDVIKVDYRNASFFAYYPYHTATGNYAGLAGGTTLTLQAQLFNAGEDICYGAGEASGGGPVSVYNPFVEFLNMKHAYARLRLTLTRGEKFDKTKKCNIQNITFKSNNANFYLTRSLDIASTAGATGGSAVAAGYVHNPNVNIATGKSVTYEYMFPPQPLDGSKLTILVTVDGVTRSCDISTLGSSLDSGKYYGVSLTFTDVGIILSSAVVTVNNFGGQGNTQVDTELLast
1 -98.7003sy6_A mol:protein length:291 Fimbrial protein BF1861  ali model  100  1GEQEDKVSGEKTLAVVSASSDDRPSTRGIINDNTYALGVFRTTANTYAPLYNVKHIYSGGEWGADDVIKVDYRNASFFAYYPYHTATGNYAGLAGGTTLTLQAQLFNAGEDICYGAGEASGGGPVSVYNPFVEFLNMKHAYARLRLTLTRGEKFDKTKKCNIQNITFKSNNANFYLTRSLDIASTAGATGGSAVAAGYVHNPNVNIATGKSVTYEYMFPPQPLDGSKLTILVTVDGVTRSCDISTLGSSLDSGKYYGVSLTFTDVGIILSSAVVTVNNFGGQGNTQVDTEL 291
2 -65.8004k4k_A mol:protein length:282 Putative cell adhesion protein  ali model follow..  13  1GGENTPQPTDGRVALATSGIRMNTRAYDKTWEAGDAIGIYMLNGDATDGNGNRKYTAENGSFTAAEGFPVDASQRDFVAYYPYRETLADGNVYT----VDVSVQTPQKDIDLMGAA-----KVEGKDKTDPKVAFVFTHKLVKLDITIKADGTSLTDADLAGTTVSIS----NQQTAATYNVVTGGDATVTTGTTKEIV-------LHTDGLKAEGIVLPAASTAGMALTFTVPGLEHWDVNSAAQSKAFVAGSKYLYTITISKAGVEVS-SKVEDWTPGNGGGETGNAE. 282
3 -65.3003ufi_A mol:protein length:297 hypothetical protein BACOVA_04980  ali model follow..  14  1GDEESGKADRAYKPIEVVNNVQETRAVGAAWGSDDRIGVTVEADEDNATYINIQYRNETGGGSTDNNIRLGEGEFTLNAYYPYQGANGTLPGIAKTISGADQTTDKQPQIDFLFA-------QATGVRAESPVTFDFSHKMTKIILKFKATNGATLNN--------MKVYLKSLQLEGSFNVTTGEAVAKSGATPNSELSM-DIAKPAEGEMTASIILFPQDMPE-KVLLEVRMNDETYTQYMP--VQNLESGHAYPYNVTFENPAMTITKAEIEDWIVEDDKDVTASVT. 296
4 -64.6003t2l_A mol:protein length:308 Putative cell adhesion protein  ali model follow..  19  1GGRWKASALRVPLQVSSAVIKQEVVTRLPVPLTEGAIGIFLSGTEPEKVIDNRKYVYSEGHWGPPTAIYLVGNDADVCAYYPYKDSYTDKTVI------PLQSQDYVETEDIYYAL------NTMINGFTPAITFDMVHAYSLVELKISRENYFMPCEISKI-----TLKNSNLIKKGTINIAVDGSIHSSETGNYDVTDASPHTLSVGESYVCRVLMIPVPLKIFGLSVSLVIDGQQMLVEIPYSEGEFRQGEKYVIGLKIKGTEIVP-TVKALEWEDEEVNGGNKYP.. 306
5 -62.4004qb7_A mol:protein length:359 Uncharacterized protein  ali model follow..  11  1GEMTEMNPDTNRTIGLDVYTEVQTRGTTSTLKANAGFGIFAYQTSSANFMYNEHATWTSDSWGYTNLRFWDDKKITFFAYAPYESKPEVGTDQKITLSGQNTSNNWKDMIDLVTDCHT-AIQDQTNESNKGTVQFKFSHVLTQIANIKVKPDVNLTDTKIFVTGLKLDPGSTTLYNKAVYKFDNDTWEAISPDASYFSTEQDDQNATALFSDTEALYFIPVNNKNGDLKLKINYDSTITNKEVSLPKNTFKKGTKHTYVLTIKMNAIKITEDNMEGWTDDSDSDINVE... 358
6 -60.5004dgu_A mol:protein length:247 putative cell adhesion protein  ali model follow..  14  1GDELQETSKEASISIDDALSDPLTRTSNDLFPARNSITTGEVISMAASGQDYTPFIVGKDSRAWNE-IGTATGTVTFYAHYPALTDEAATRS-------GGNKRYLKGGQEHLFG-------TAEAAPGSQNVSLKFKRMTVPVIILDENDRPYEGEAKVEL----------SLKNEGTQDLLNGTIEINENALSENIE-------VKKVSEGVTTNVLPQKINAGEEIGTITVGGVTQKISAV-EDLDLKAGSTLSVRLSKKFGGGIIDG-NVPLYR............. 247
7 -49.6004h40_A mol:protein length:327 putative cell adhesion protein  ali model follow..  8  30.........SAQTRGATPDGETLKDRPIFLLEDGSTIRLVVYDDAKNLLEEYCEVDDNGAVISSSSTLYMKAGTYYFRILSPAKALNSKGFVNIGNGEYLLATDDRYTQTAMTAVTITKIDEGGTLNNVQTLYLPPIINQTARMQFTVRAGEGVHTLEMLAE-----GIEISGIQQPLDNTTSFDWVNGDVLPVKVGDQSASVATRNADNSLVAHTGVLPTDARSHSISVLLNLNGNPTQYQMLLTGLYLTAGHSYNYTATVKISNVTVLTWQNRSWTENVVMD....... 326
8 -37.5004eps_A mol:protein length:510 hypothetical protein  ali model follow..  11  1GEEEVPGNVRNGIVLNVTDNEPSTRTEVTTFTQGDQIGLFAVKDGAIDEINNMPFTFNGSSWSGKPILYDRLVGVNFYAYYPYQSEMTGKTDLIGELTTEQSDQKAYAKQDLMTSN----ATALIGENGNYSLSFQLTHRMSLVVVKLPSTRYIFTDAEGVAMPEETPYVAMS--------------VDVAFYLDNVEEGTKISPYYDAKKDEYRLLRKPSSENQ----IIGHYNDKQCTLDTAE---KMKEGKYKRFVVDGGYKEVT....................... 265
9 -16.1005nf4_A mol:protein length:451 Minor fimbrium tip subunit Mfa3  ali model follow..  10  28.PDPLQPDVYLLVNARAAHTNGEESINMDAEDFEDRVHMLVFDSNTGEKVAEHFSSSIGSG-TYVFTVKLKPGQRDFFFVANIPNMQTAMASIVNKSDMNHFMQVFRDLDPIHYHNATNTITQPLPFKPDGENNVKLQRVVAKLDVNIVEGV---NLQKIELCNANVHYRLIQFYGPVELRRVGATNQWLGYMPEAIVESTKWWGNTGNAENKPINFFRLTTRGGLVYDVPIITHEGAIPGGQDKPSYTVYRNRHYIYRIKTLPDKIEV-KYSICDWNIVTND........ 346
10 -15.4004jg5_A mol:protein length:355 Putative cell adhesion protein  ali model follow..  8  1GKDEDPVLPLEGAKLSVAVKASGTATKAYNPNDVNNLAVVVFNETGTELLGYEALSGAEHSAIIADVPTTKAVRARIIVLANVPRDLLSTVSTYDEFQTRLVDLSSQSQTNLTMSSQVIVTDLGDQNVDGISDPILLTRVAARIDLVNISAGTPFAGREVRIDAVGINMKTKSYYFSEADWGETEAPDAVRNSEDTSFEDLLVNDGTSISNTPFVHYVMENMKSDDHTMIAVK-QDHTKIFTAGYDHNFIRRNYVYRLRIYFDGESFD--AVQVVGWG-----PVMQHPVI 354
11 -15.3004q98_A mol:protein length:369 Major fimbrial subunit protein  ali model follow..  12  1GKDNEAEPVETNATVSFIIKSGESRAVGDDLTDATKLTAMVYAGQVQEGIKT--VEEDGGVLKVEGIPCKSGANRVLVVVANHNYELTGKSLNEVEALTTSLTAENQNAKNLIMTGKSAPGGTASDNLVSAGTPLAVTRVHAGISFAGVEVNMATQYQNYYSFKPADKIAALVAKKDSKIFGNSLVSNTNATPDAAGETYELEASLNTNYAVGAGFYVLESKYDASNVLVNYDGNGYIYSGAITQGQNKIVRNNHYKISLNITGPGLNVT-CQVTPWV-------VVNQAA 367
12 -14.6003up6_A mol:protein length:347 hypothetical protein BACOVA_04078  ali model follow..  8  2.....DVAYELPAHTTRAQLSIDLVNNGDVEQQENSMRFIVFGSTPGGVRLDVNEHILLSTPETATDID-SSNDILVVVIANEPQSLTSQLDGIANLLSSILNSDGQIISATGMPMTGVIRDISIAPDETKTVQMVIERAVARVDVFIEAIDGGATGYTAGSTSVTLHNFSHDSYGKVKEDVSESNLLTHSWTAATTETWAYSSAPGAENRKLLCSFYTAERLFKSDISMANVLKGPSDVTGITQPFTEIRRNNVYQVTARVGKIGIQILTISVEDWGERQ--DIDLDMDL 347
13 -14.3003liu_A mol:protein length:402 Putative cell adhesion protein  ali model follow..  9  1GDDNEPVLEKAQLALAIKSEEGAVTKTGETTPTDADVNVGVFGVDGWSVIYTKDATPNSDGTKDVGPQEVYAGEAHVVVVA-IQTELAKAKDITDFIETTINLSDETLTKGLTMSSKDITVKDISGKEVYGAGPVPLVRDVASIALAGADIGNPENANYESKSFVLKEVFIASAKGVSSVASTEEWGTIEKDFENTKGEVKSGESNVNEAYANHTLLIVKGDYTYLPQGAKESITKENCYYAIKRSKFYVQRNYKYEISLTIIGPGVSAS-VKVEPWNV----TIHEEVE. 402
14 -13.9003gf8_A mol:protein length:296 putative polysaccharide binding proteins (DUF1812)  ali model follow..  8  9.EDLPECRLSVKFKYDYNMEFADAFHAQV-----DKVELYVFDKNGKYLFKQAEEGSALSTGNYLMEVELPVGQYQFMAW-SLTPGVSTLTDLKLKLKREASLIINKRMETLWYGEVINVNFD---GTVHQTETINLIRDTKIVRFGFQSYTGSWTLDMNDYD-YEIIESNGHLGHDNSL------------LDDDVLSFRPYYMEQKDPATAYVDMNTMRLMEDRKTRLVLTEKASGKRVKNLSTQEYLDRQSNYHIIFFLSESWLAV-QIVVNGWV............. 288
15 -12.9004gpv_A mol:protein length:348 putative cell adhesion protein  ali model follow..  10  25...............GDGDNQAQSRAAGPATDTEDNYLVFLFREGGA--LDCAPYEGSSNAAATITTGTTAAKKAYVVANTGALAGGLFATVKTETDLLAVTGSLMDNTDNASTQTKSGESEVKFNGGTNAQVTVSLSFVAAKIQLIVKDNRKNMTGGTITITDDAAVLTQNEFYTGFNQYTGAFDSGVTTSTALSDAVSPGDFTINAGSTVFNHFYTFGNDGTTQPTILAIK-TSSPIFYPITDARHTIEPGKSYTVTVTLNGDVAAGGTVTAAQWV-----TQPVDKEF 347
16 -12.1004rdb_A mol:protein length:305 Immunoreactive 32 kDa antigen PG49  ali model follow..  9  1GDRSIEISIRVDDFTKTGEAVRYERNQGSAAER-TNLYLLLFDQSGANPAKTGGTWLPDDMKVKLDMTQSEAGERKVYVVANVDDAVANESDLQTVKRTTAMPWSTDIASPFL----MSGNKTHDFLANRLLDNVPLVRAIAKVELNISLSEKFQIVPIIVNGSLSEKFRYVNFDKETYVDWTVWGASLNTSPAPDAGTGYTLDANGKVTALRIVTYLNERDSKGATVEVALPRVDDGTLPPPLPLPDKILRNHWYKYEVEI............................. 305
17 -11.5004qdg_A mol:protein length:310 Putative adhesin  ali model follow..  10  6.EDLAPCPHGVSLRFI---YDYNMEYANAFAKKVDCLTLLVYDENGNYVDTRIVTGTELQDENYRMKLDLKQGNYHFVAY-YTPGEGTGYTDLQVELDSECLTNPRRKNLHGLY----WGELTLATADLYSEGTVEMMKNTNNIRVVLQQMNGEPVD--DKKFEFEITDDNILFSYDNNLLENGMVTYTPWAQGQASAGFTDEGREVVVAYAELSTSLMVRDWYSPKLTVRRKADGVEINIPLIDSQEFLDRESEWSMIFFLSPNLEWIKYIKINDWT............. 302
18 -10.1005dhm_C mol:protein length:282 Immunoreactive 32 kDa antigen  ali model follow..  8  1......................ERNQGSAAERLITNLYLLLFDQSGANPAKYYIAGNTFSGGIWLPD---EAGERKVYVVANVDDAVANESDLQTVKRTTAMPWSTDIASPFL----MSGNKTHDFLANRLLDNVPLVRAIAKVELNISLSEKFQIVPIIVNGSLSEKFRYVNFDKETYVDWTVWGASLNTSPAPDAGTGYTLDANGKVTALRIVTYLNERDSKGATVEVALPRVDDGTLPPPLPLPDKILRNHWYKYEVEI............................. 282
19 -9.9905nfi_B mol:protein length:281 Minor fimbrium anchoring subunit Mfa2  ali model follow..  9  26..................................ARLNVYAFDKDGILRSANVFEDVQLSAAKEWLIPLEKDGLYTIFAW-EIKIGETTKQQVLMRLKQDGKWATNIDGTTLWYATSPVVELKNMEDGADIHTRANLREYTNRVTVSVDSLPHPENYEI-------------------KLASSNGSYRFDGTVAKADSTYYPGETKVVGDSTCRAFFTTLKLESGHENTLSVTHKPTGREISQYAQNINLRCINDFDIRLVAPDDTYVVVQIWINGWL............. 277
20 -9.7503pay_A mol:protein length:314 putative adhesin  ali model follow..  8  8.EDLPRCELWLEFVFDYNMEYADAFNPQV-----KSVDVLVFDSDDK-----FTKSVKVAALVGGNRMSLDFGSYKVLTVGSLSDRFRLSDNAGNKLVPGTTTLQQNFEFQHLYFGEVVEVDHLPSNTNHKIYPVNLIRDTNRFNLALMGYEENKVDGTQYTFEIQAP-------ENAVYSWENEPTGQGPITYVPYYTGPGEISDVVMSARLNTMRLLNRSGWDYKFIIRDANTEAEWSYNLMPFQEYLDRQSEWNLVFTVVEKN-LQIGIVVGTWIH-----WLHGMEV 314
21 -9.3305cag_A mol:protein length:318 Uncharacterized protein  ali model follow..  8  27..........................DGVTDQLPEGVRVIFYPKNGDGRKVDKYLSVRGGE------MKVPPGRYSVVVY---SYETIEAYTGNCNGLGIEGTEKMVWSPDSLYV-LNIDELKIEKSEEVLRLDWKLESVVKKYSFAVEAKGLEYVA--------TVVGSIDGL--SDCYCIGKGRGVCSSQPIYFEVKKGDNKVTAF-----FTAFKQVKEMTMPTRMSTSERETSSEKGAIILIKFIKTDNTVQEATIDVTEIELPPDGGNVDGWGPEDNVELPVN... 318
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.