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Query: 3t2l_A mol:protein length:308 Putative cell adhesion protein, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GSDDREMDDGRWKASALRVPLQVSSAVIKQEVVTRLAPDPVPLTEGAIGIFLSGTEPESGQEDSGYKVIDNRKYVYSEGHWGPPTANDTIYLVGNDADVCAYYPYKDSYTDKTVIPLQSQDYVETEDIYYALNTMINGFTPAITFDMVHAYSLVELKISRENYFMPCEISKITLKNSNLIKKGTINIAVDGSIHSSETGNYDLTTVTDASPHTLSVGESYVCRVLMIPVPLKIERTDAEGGEFGLSVSLVIDGQQMLVEIPYSELGEFRQGEKYVIGLKIKGTEIVPTVKALEWEDEEVNGGNKYPVELast
1 -107.0003t2l_A mol:protein length:308 Putative cell adhesion protein  ali model  100  1GSDDREMDDGRWKASALRVPLQVSSAVIKQEVVTRLAPDPVPLTEGAIGIFLSGTEPESGQEDSGYKVIDNRKYVYSEGHWGPPTANDTIYLVGNDADVCAYYPYKDSYTDKTVIPLQSQDYVETEDIYYALNTMINGFTPAITFDMVHAYSLVELKISRENYFMPCEISKITLKNSNLIKKGTINIAVDGSIHSSETGNYDLTTVTDASPHTLSVGESYVCRVLMIPVPLKIERTDAEGGEFGLSVSLVIDGQQMLVEIPYSELGEFRQGEKYVIGLKIKGTEIVPTVKALEWEDEEVNGGNKYPVE 308
2 -67.5004k4k_A mol:protein length:282 Putative cell adhesion protein  ali model follow..  16  1GGENTPQ------PTDGRVALEATSGI---RMNTRAY-DKTWEAGDAIGIYMLNGDATD----GNGNRKYTTAQTAENGSFTAAEGQTIYFPDASQRDFVAYYPYRETLADGNVVDVSVQTPQKDIDLMGAAKVEKDKTDPKVAFVFTHKLVKLDITIKADGTSTDADLAGTTVSISNQQTAATYNVVTGGDATVTTGTTKEIV----------LHTDGLKAEGIVLPAASTAGMALTFTVPGL-------EGQAFHWDVNSAQSKAFVAGSKYLYTITISKAGVEVSSKVEDWTPGNGGGETG-NAE 282
3 -64.8003ufi_A mol:protein length:297 hypothetical protein BACOVA_04980  ali model follow..  13  1G----DEESGKADRAYKPIEIYGNINEVVNNVQETRAVGAAWGSDDRIGVTVEADEDN--ATANAVDTYINIQYRNETGG-EGSTDNNIRLKGEGEFTLNAYYPYQGANGTTISGADQTTDKQPQIDFLFAQATG-VRAESPVTFDFSHKMTKIILKFKATNGA---TLNNMKVYLKSLQLEGSFNVTTGEAVAKSGATPNSELSMD----IAKPAEGEMTASIILFPQDMPE----------KVLLEVRMNDETYTQYMP---VQNLESGHAYPYNVTFENPAMTIKAEIEDWIVEDDKDVTASVTE 297
4 -64.6003sy6_A mol:protein length:291 Fimbrial protein BF1861  ali model follow..  19  1G--------EQEDKVSGEKTLAVVSASSDDRPSTRG---IINDNTYALGVFRTTANTY--------APLYNVKHIYSGGEWGADDV---IKVDYRNASFFAYYPYHTATGNYAGLTLQAQLFNAGEDICYGAGPVSVYNPFVEFLNMKHAYARLRLTLTRGEKFDKTKKCNIKSNNANFYLTRSLDIASTAGATGGSAVAAG---YVHNPNVNIATGKSVTYEYMFPPQPLDG---------SKLTILVTVDGVTRSCDISTLG-SSLDSGKYYGVSLTFTDVGIILSAVVTVNNFGGQGNTQVDT.. 289
5 -60.5004qb7_A mol:protein length:359 Uncharacterized protein  ali model follow..  16  1G-------EMTEMNPDTNRTIGLDVYT---EVQTRGTTTSTLKANAGFGIFAYQTSSASEKGNTTPNFMYNEHATWTSDSWGYTN-LRFWPIDDKKITFFAYAPYESKPEVGTDQKITSNNWKDMIDLVTDCHTAIESNKGTVQFKFSHVLTQIANIKVKPDVNLGTFVTGLKLDSTTLYNKAVYKFDNDTWEAISPDASYFSTEQDLSDFLNKTTTDSDTEALYFIPVNNKNGTTNAGDLKLKINYDIVTKVSTITNKEVSLPKNTFKKGTKHTYVLTIKMNAITVEDNMEGWTDDSDSDINVEK.. 359
6 -57.4004dgu_A mol:protein length:247 putative cell adhesion protein  ali model follow..  10  1G-------DELQETSKEATNFSISIDDALSDPLTRTS-NDLFPARNSITTGEVISMAASGQ--------DYTPFIVGKDSRAWNE----IGTATGTVTFYAHYPALTD-EAATRSGGNKRYLKGGQEHLFGTAE-AAPGSQNVSLKFKRMTVPVIILDENDRP-----YEGEAKVELSLKNEGTQDLLNGTIEINENALSENIEV----------KKVSEGVTTNVLPQKINAGEEI---------GTITVGGVTQKISAVED--LDLKAGSTLSVRLSKKFGGGIIDGNVPLYR............. 247
7 -55.9004h40_A mol:protein length:327 putative cell adhesion protein  ali model follow..  9  2AAGSPE--EDMEDRVRIDPVAGGYYPSISPSAQTRGATPDLLEDGSTIRLVVYDDAKNLLEEYGTSGSSLLYPCEVDDNGAVISSSSTPLYMKAGTYYFRILSPAKALNSKGFTDDRYTQTAMTAVTITKIDEGGLNNVQTLYLPPIINQTARMQFTVRAGEGVHTLEMLAEGIEISGIQQPLDNTTSFDWVNGDVLPVKVGDQSASVRTQATRNADNSLVAHTGVLPTDARSHSI-------SVLLNLKVNGNPTQYQMLLTGL-YLTAGHSYNYTATVKISNTVLTWQNRSWTENVVMD....... 326
8 -37.2004eps_A mol:protein length:510 hypothetical protein  ali model follow..  14  1G------EEEVPGNVRNGIVLNVTTGIISNEPSTRTEDTTTFTQGDQIGLFAVKDGAIL-------DEINNMPFTFNGSSWS--GKPILYDDRLVGVNFYAYYPYQSEMTGKTDTEQSDQKAYAKQDLMTSNATALENGNYSLSFQLTHRMSLVVVKLPSTRYIFTDA------------EGVAMPEETPYVAMSVDVAFYLDNVEEGTKISPYYDAKKDEYRLLRKPSSENQIIGHYNDKQCTLDTAEKM-----------------KEGKYKRFVVDGGYKEVTHHLQVGD............... 272
9 -25.9005nf4_A mol:protein length:451 Minor fimbrium tip subunit Mfa3  ali model follow..  6  19GAMRGVDPQPDPLQPDVYLLVNARAAHTNGEESINMDAEDFEDRVHSLAMLVFDSNTGEKVA----------EHFSSSIGSGTSTYVFTVKLKPGQRDFFFVANIPNMQTAMASIVNKSDMNHFMQVFMSRMYSNQTKPDGENNVKLQRVVAKLDVNIVEGV------ENLQKIELCNANVHYRLVPNQSEPIQFYGPVELRRVGATNQWLGYMPEAIVESTKWWGNTGNAENKPINFFRLTTRGGLVYDVIPGGQYLPFADKPSYTVYRNRHYIYRIKTLPDKIEVKYSICDWNIVTND........ 346
10 -24.7004gpv_A mol:protein length:348 putative cell adhesion protein  ali model follow..  11  1GNDEVENLGNNVPGEQAVLTIKLKGD-GDNQAQSRAAGPATDTEDAVINVFLFREGGALDCAPYEGSSNAAATITTGTTA-----AKKAYVVANTGALAGGLFATVKTETDLLAVTGSLMDNTDNASWMSGESE-NGGTNAQVTVSLSFVAAKIQLIVKDNRKNMTITITDDAAVLLFAGKKGRFGFNQYTGAFDSGVTTSTALSDAVSPGDFTINAGSTVFNHFYTFGNDGTTQPTILAIKSTKTVGGTSSPIFYPILFNTDARHTIEPGKSYTVTVTLNGDVIEVTVTAAQWVTQPVD........ 344
11 -21.0004jg5_A mol:protein length:355 Putative cell adhesion protein  ali model follow..  9  1GKDEDPVLP----LEGAKLSVAVKASGTATKAYNPNDVNELEGEANNLAVVVFNETGTE---------LLGYKWEALSGAEHSAIIADVPTTKAVRARIIVLANVPRDLLSTVSTYDEFQTRLVDLS--YTDLGDQNVDGISDPILLTRVAARIDLVNISTRPFAGREVRIDAVGIYNMKTKSYY--ADWGETEAPDAVRNSEDTSFEDLLVNDGTSISNTPFVHYVMENMKSDDHTMIAVKATLRGNSSYQDHTKIFTANGYDHNFIRRNYVYRLRIYFDGESLNIAVQVVGWGPVMQH........ 351
12 -20.9003gf8_A mol:protein length:296 putative polysaccharide binding proteins (DUF1812)  ali model follow..  6  3SCDNEDLPE------RLSVKFKYDYNMEFADAFHAQV--------DKVELYVFDKNGKYLF-----------KQAEEGSALSTGNYLMEVELPVGQYQFMAWAGARDSYDITSLTPASLIINKRMETLWYGEVINVGTVHQTETINLIRDTKIVRFGFQSYTGSWTLDMNDYDYEIIESNGHLGHD----------NSLLDDDVLSFRPYYMEQKDPATAYVDMNTMRLMEDRKTRLVLTEKASGKRVFDIN-MTNAEGKNLSTQEYLDRQSNYHIIFFLSESWLAVQIVVNGWV............. 288
13 -20.9003liu_A mol:protein length:402 Putative cell adhesion protein  ali model follow..  9  1GD--DNEIEIPKAPVLEKAQLALAIKSEEGAVTKTGETTPTDADVNTLTVGVFGVDGWSVIYTKDATPNSDGTKDVGP---VYAGEAHVVVVANAAPVIQTELAKAKDITDFIETTINLSDETLTKGLTMSSKISGKEVYGAGPVPLVRDVASIALAGADIGNPENANYESKSFVLKEVFKVGLLFLTSPNNIDEGSYKKGLQTKYDALAKKHVENDPALNHEFYVYENTKGEVKSKESITKENCYYAIPVGEEVTIDGTEKRSKFYVQRNYKYEISLTIIGPGVSASVKVEPWNVKTIH----EEVE 402
14 -18.5003up6_A mol:protein length:347 hypothetical protein BACOVA_04078  ali model follow..  10  1................GDVAYELPAHTTRAQLSIDLVNNGDVEQQEKINFIVFGSTPGGVRLDVNEHILLS-----TPETATDIDAQLLEVTSSNDILVVVI------ANEPQSLTSQLDGIANLLTLMTGVIRDISDETKTVQMVIERAVARVDVFIEAIDGGAVTTAGSTSVTLHNFSHDSYFKEDVSESNLLTHSWTAATTETWAYSSAPGAENRKLLCSFYTAERLFKSDYSDRLSISMANVLKGPSDVTGITGKVTAQPFTEIRRNNVYQVTARVGKIGQILTISVEDWGERQDIDLD..... 344
15 -17.7004qdg_A mol:protein length:310 Putative adhesin  ali model follow..  5  2ERIYEDLAP----PHGVSLRFIYDYNMEYANAFAKKV--------DCLTLLVYDENGNYVD-----------TRIVTGTELQDENYRMKLDLKQGNYHFVAY---LACNKSSFLMKYTPGEGTGYTDLQVELTLATADLYSEGTVEMMKNTNNIRVVLQ-QMNGEPVDDKKFEFEITDDNILFSYDLENGMVTYTPWAQGQASAGFTDEGREVVVAYAELSTSRLMVRDWYSPKLTVRRKADGVEIINIPLINLKSDLYASMDSQEFLDRESEWSMIFFLSPNLIKTYIKINDW------TVRINDIR 309
16 -17.2004q98_A mol:protein length:369 Major fimbrial subunit protein  ali model follow..  10  1G---KDNEAEPVVETNATVSFIIKS------GESRAVGDDLTDAKTKLTAMVYAGQVQTVEEDGGVLKVEGIPCKSGANRVLVVVANHNYELTGKSLNEVEALTTSLTAENQNAKNLIMTGKSAAFTIKPGSNASDNLVSAGTPLAVTRVHAGISFAGVEVNMATQFKPADAKIAALVAKKDSKIAAGETYELEASLNTNYAVGAGFYVLESKYDASNELRPTILCIYGKLLDKDGNPLTEPDAINAGFCDGDGTTYYPVITQGQNKIVRNNHYKISLNITGPGLNVTCQVTPWVVVNQA........ 366
17 -14.7005cag_A mol:protein length:318 Uncharacterized protein  ali model follow..  9  5GCSRRDILDDY---PVSGVDIKLD-------------DGVTDQLPEGVRVIFYPKNGDGRKVDKYLSV-RGGEMKVPPGRYSV----VVYNYNTESIRIRGEESYETIEAYTGNCNGLGIEGTEKMDSLYVLNIDESEEVLRLDWKLESVVKKYSFAVEAKG---LEYVATVVGSIDGL--SDCYCIGKGRGVCSSQPIYFEVKKGDNKVTAFFTAFKQVKEMTMPTRMSTSERETSSEKGAIILILKFIKDNTVQEATIDVTEIIG-KPTPPPEIELPPDDGGGGMGGNVDGWGPEDNVELPVN... 318
18 -13.8004jrf_A mol:protein length:508 putative cell adhesion protein  ali model follow..  10  2ACSNDEEGQNQLPVDGREAYMSVSVAM-PKSTGTRALGEHHGTADEEVLLALFDASDVCL---ETKTLATTDYILNVGGANKAGYDGKAFKVPSATAKVLAVVNPSDKFKTACVASASWSAGTSKNNFMMINAAISEAQADRSMIYVDRVVAKVSLGTNPDGLKVPATCTFGDWALNITNKSMFPDGTLPADFSAMADSKYCLENTMAADAQTQAQTTSAVASAVYTPGSFTVGESWFTITELDDLKSGGEYSKPDAAAGETVGVEYFQKGVCYWYTLTINSAYLSVEITVNPWT............. 500
19 -13.6004rdb_A mol:protein length:305 Immunoreactive 32 kDa antigen PG49  ali model follow..  8  1G--------------DRSIEISIRVDDFTTGEAVRYERNQGSAAERLITLLLFDQSGANPAKYYITGNTFTGGTWLPDDM---KVKLDMTQSEAGERKVYVV------ANVDNAVKTALDAVANESDLMSGNKTDFLANRLLDNVPLVRAIAKVELNISLSEKIVNGSLSEFKFRYVNFDKETYV-VKPTTKPDNLISSANGVWPQITDWTVWGASLNTSPAPDAGTGYTLDANGKVTALRIVTYLNERDSKGATVEVALRLPLPDKILRNHWYKYEVEI............................ 305
20 -13.4005nfi_B mol:protein length:281 Minor fimbrium anchoring subunit Mfa2  ali model follow..  10  1.CPRG-------------VYVNFYSQTECAENPSYPAE-------ARLNVYAFDKDGILRS-----------ANVFEDVQLSAAKEWLIPLEKDGLYTIFAW----GNIDDHYNIGEIKIGETTKQQVLMRLKQDGKWATNIDGTTLWYATSPVVELKNMEDGADQYITNRVTVSVDSLPHPENYEIKLASSNGS-DGTVAKADSTYYPGETKVVGDSTCRAFFTTLKLESGHENTLSVTHKPTGREIFRTDLVGAILSSQYAQNINLRCINDFDIRLVAHDTYVVVQIWINGWL............. 277
21 -12.5003r4r_A mol:protein length:296 hypothetical fimbrial assembly protein  ali model follow..  7  1G-------EVPIGFDTDELSFDMSLVLLTGDMQTKASDPNYTYATQNCHVAVFDKDGKRIYFKYSKDLGEMKTIGNLSGYELQLEGVRTFGKEDKKVSVLVVANANNANNSPFDNLTTYDGVDNSY-VKIGKSEKYNQDNAPVTVSLIQLSAKIEYTGVYKKENGELGFSLTKVAGLNASSKITI........................................................................................................................... 205
22 -12.3003pay_A mol:protein length:314 putative adhesin  ali model follow..  6  2SCDREDLPR------ELWLEFVFDYNMEYADAFNPQV--------KSVDVLVFDSDDK----------LLFTKSVKVAALVGGNRMSLTDELDFGSYKVLTVGSLSDRFRLSDSLKRETGGVNFEFQHLYVDHLPSNTNHKIYPVNLIRDTNRFNLALM-GYEENKVDGTQYTFEIQAP-ENAVYSWENEPT----GQGPITYVPYYTGPGEISDVVMSARLNTMRLLNRSGWDYKFIIRDANTEAEVWSYNLMTLLSIARPVSRYDLDRQSEWNLVFTVVEKNLQIGIVVGTWI............. 306
23 -11.7005dhm_C mol:protein length:282 Immunoreactive 32 kDa antigen  ali model follow..  10  2..................................RNQGSAAERLITNLYLLLFDQSGANPAKYYIAGNTFSGGIWLPDDM---KVKLDMTQSEAGERKVYVV------ANVDNAVKTALDAVANESDLMSGNKTDFLANRLLDNVPLVRAIAKVELNISLSEKIVNGSLSEFKFRYVNFDKETYVVKPTTKPDNLISSANGVWPQITDWTVWGASLNTSPAPDAGTGYTLDANGKVTALRKGATVEVALPRVDDGTLPPPRLPLPDKILRNHWYKYEVEI............................ 282
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.