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Query: 3thp_A mol:protein length:345 Alkylated DNA repair protein alkB homolog 8, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst AKHTLLRHEGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQWKELRPQALPPGLMVVEEIISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVKHFGYEFHYENNNVDKDKPLSGGLPDICESFLEKWLRKGYIKHKPDQMTINQYEPGQGIPAHIDTHSAFEDEIVSLSLGSEIVMDFKHPDGIAVPVMLPRRSLLVMTGESRYLWTHGITCRKFDTVQASESLKSGIITSDVGDLTLSKRGLRTSFTFRKVRQTPCNCSYPLVCDSQRKENLYFQGLELast
1 -131.0003thp_A mol:protein length:345 Alkylated DNA repair protein alkB homolog 8  ali model  100  1AKHTLLRHEGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQWKELRPQALPPGLMVVEEIISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVKHFGYEFHYENNNVDKDKPLSGGLPDICESFLEKWLRKGYIKHKPDQMTINQYEPGQGIPAHIDTHSAFEDEIVSLSLGSEIVMDFKHPDGIAVPVMLPRRSLLVMTGESRYLWTHGITCRKFDTVQASESLKSGIITSDVGDLTLSKRGLRTSFTFRKVRQTPCNCSYPLVCDSQRKENLYFQGLE 339
2 -70.3004qkb_A mol:protein length:200 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial  ali model follow..  17  4..................................................................................................RGSGPSVLSRLQDAAVVRPGFLSTAEEETLSRELEPE------------LRRRRYEYDHWDAAIHGFRETEKS---RWSEASMAIMRRVQAAAFGQTLLSSVHVLDLEARGYIKPHVDSIKFCGATIAGLSLLSPSVMRLVHTQEPWLELLLEPGSLYILRGSARYDFSHEILRDEESFF----------------GERRIPRGRRISVICRSLPEGMGPGES.................. 199
3 -67.0004npl_A mol:protein length:250 RNA demethylase ALKBH5  ali model follow..  16  7...................................................................................................ERRDAEARRVKSGIKQ-ASIFTLEECARIEAKIDEVVAKADKHTVDRAPLRNKYFFGEGYTYGAQLEKRGPGQEDDIPDWVHELVIDRLVT-IPEGFVNSAVINDYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKSEPVLHLPVRRGSVTVLSGYAADDITHCIRPQDI-------------------------KERRAVIILRKTRADAPRLDSNSLSPSIVSPKRRHILKA 243
4 -63.5004o61_A mol:protein length:222 RNA demethylase ALKBH5  ali model follow..  17  2.................................................................................................QQLQKEEEARKVKSGIRQ-MRLFSQDECAKIEARIDEVVSRAEKHTVDRAPLRNKYFFGEGYTYGAQLQKRGPGQEDEIPEWVHQLVIQKLVEHIPEGFVNSAVINDYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKSEPVLSLPVRRGSVTVLSGYAADEITHCIRPQDI-------------------------KERRAVIILRKTRLDAPRLE................... 221
5 -63.4004nj4_A mol:protein length:250 RNA demethylase ALKBH5  ali model follow..  17  27...................................................................................................QLQKEEEARKVKSGIRQMRLFSQDECAKIEARIDEVVSRAEKHTVDRAPLRNKYFFGEGYTYGAQLQKRGPGQEDEIPEWVHQLVIQKLVEHIPEGFVNSAVINDYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKSEPVLSLPVRRGSVTVLSGYAADEITHCIRPQDIK-------------------------ERRAVIILRKTRLDAPR..................... 243
6 -53.5004nig_A mol:protein length:205 Alpha-ketoglutarate-dependent dioxygenase AlkB  ali model follow..  20  2..........................................................................................................EPLAAGAVILRRFAFNAAEQLIRDINDVASQYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPA-MPQSFHNLCQRAATAGYPDFQPDACLINRYAPGAKLCLHQDIHPDLRAPIVSVSLGLPAIFQFGGRNDPLKRLLLEHGDVVVWGGESRL-FYHGIQPLKAGFHP-------------------LTIDCRYNLTFRQAGKKE....................... 205
7 -52.9002fd8_A mol:protein length:211 Alkylated DNA repair protein alkB  ali model follow..  20  3..........................................................................................................EPLAAGAVILRRFAFNAAEQLIRDINDVASQYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPA-MPQSFHNLCQRAATAGYPDFQPDACLINRYAPGAKLSLHQDDEPDLRAPIVSVSLGLPAIFQFGGRNDPLKRLLLEHGDVVVWGGESRL-FYHGIQPLKAGFHPL-------------------TIDCRYNLTFRQAGKKE....................... 206
8 -52.1003khb_A mol:protein length:219 Alpha-ketoglutarate-dependent dioxygenase alkB  ali model follow..  19  9...................................................................................................ADAEPWQEPLAAGAVILRRFAFNAAEQLIRDINDVASQSPMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPA-MPQSFHNLCQRAATAGYPDFQPDACLINRYAPGAKLSLHQDDEPDLRAPIVSVSLGLPAIFQFGGRNDPLKRLLLEHGDVVVWGGESRL-FYHGIQPLKAGFHPL-------------------TIDCRYNLTFRQAGKKE....................... 219
9 -47.4005xeg_A mol:protein length:231 Oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed  ali model follow..  17  2.....................................................................................................EAAPLQYLRPGMVLLKKFLKHDDQVDIIRRCGSGGFYTPGYRDGGKLSLQMMCLGKNWDPNSRSYGDTRPFDGAQPPSIPEVFSKIVKEELPPLSPDICLVNFYTSSGKLGLHQDKDETKGLPVVSFSLGDTAEFLYVNDVDKASKVDLESGDVLIFGGKSRLIF-HGVSRIKPKTAPNWLTDEAKL------------RPGRLNLTFRQ............................ 230
10 -45.6004mgt_A mol:protein length:205 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2  ali model follow..  17  12................................................................................................................DSSYTVLFGKAEADEIFQELTGALARVQVFGKWHSVPAKQATYGDA---LTYTFSGLTLSPKPWIPVLERIRDHV--SGVTGQTFNFVLINRYKDGSDICEHRDDERELASPIASVSFGASRDFVFRHKDSAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKK------------------------VLAPRVNLTFRKILLG........................ 205
11 -45.6004mg2_A mol:protein length:205 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2  ali model follow..  17  12................................................................................................................DSSYTVLFGKAEADEIFQELTGALARVQVAGKWHSVPRKQATYGDA---LTYTFSGLTLSPKPWIPVLERIRDHV--SGVTGQTFNFVLINRYKDGSDICEHRDDERELASPIASVSFGASRDFVFRHKDSAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKK------------------------VLAPRVNLTFRKI........................... 202
12 -45.4003rzm_A mol:protein length:206 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2  ali model follow..  17  12................................................................................................................DSSYTVLFGKAEADEIFQELTGALARVQVFGKWHSVPRKQATYGDA---LTYTFSGLTLSPKPWIPVLERIRDHV--SGVTGQTFNFVLINRYKDGSDICEHRDDERELASPIASVSFGASRDFVFRHKDSAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKK------------------------VLAPRVNLTFRKILLTA....................... 206
13 -45.2002iuw_A mol:protein length:238 ALKYLATED REPAIR PROTEIN ALKB HOMOLOG 3  ali model follow..  16  36................................................................................................................VCLYPGFVDVKEAEQLCQDVPWKQRTGIREDITYQQPRLTAWYG---ELPYTYSRITMEPNPHWHPVLRTLKNRI--EENTGHTFNSLLCNLYRNEKDVDWHSDDEPSLGPIIASLSFGATRTFEMRKKPPERVKIPLDHGTLLIMEGATQADWQHRVPKEYH------------------------SREPRVNLTFRTVYPDPRGAPW.................. 232
14 -44.7003rzg_A mol:protein length:209 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2  ali model follow..  17  14................................................................................................................DSSYTVLFGKAEADEIFQELTGALARVQVFGKWHSVPRKQATYGDA---LTYTFSGLTLSPKPWIPVLERIRDHV--SGVTGQTFNFVLINRYKDGSDICEHRDDERDLASPIASVSFGASRDFVFRHKDSAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKK------------------------VLAPRVNLTFRKILLTK....................... 208
15 -44.7003h8o_A mol:protein length:209 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2  ali model follow..  17  14................................................................................................................DSSYTVLFGKAEADEIFQELTGALARVQVFGKWHSVPRKQATYGDA---LTYTFSGLTLSPKPWIPVLERIRDHV--SGVTGQTFNFVLINRYKDGSDIGEHRDDCRELASPIASVSFGASRDFVFRHKDSAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKK------------------------VLAPRVNLTFRKILLTK....................... 208
16 -30.3002cq2_A mol:protein length:114 hypothetical protein LOC91801  ali model follow..  96  8AKHTLLRHEGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQWSGPS.......................................................................................................................................................................................................................................... 112
17 -21.6003lfm_A mol:protein length:495 Protein fto  ali model follow..  11  40..................................................................................................................SVSEELHKEVQLTLHKHGCLFRDLVRIQGKDLLTPVSRILIGNTYKYLNTRLCMSADFPRVGMGSSYNGQDEVDIK--SRAAYNVTLLNFFGMGKAVSWHHDENLVDRSAVYSYSCEGPEEESEDDSHLPGLAIPLHQGDCYFMLDDLNATHQHCVLAGS---------------------------QPRFSSTHRVAECSTGTLDYLQRCQLALQNVCDDVDND 336
18 -18.6002rt3_A mol:protein length:97 Negative regulator of differentiation 1  ali model follow..  20  14.............QSGACRNVFLGN--LPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQELPLN.................................................................................................................................................................................................................................................................... 77
19 -18.3001why_A mol:protein length:97 hypothetical protein RIKEN cDNA 1810017N16  ali model follow..  16  13.............KANPTTRLWVGG--LGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPL.................................................................................................................................................................................................................................................................. 78
20 -17.1002ad9_A mol:protein length:119 Polypyrimidine tract-binding protein 1  ali model follow..  17  21.............AGVPSRVIHIRK--LPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSV.................................................................................................................................................................................................................................................................... 84
21 -16.9002mql_A mol:protein length:105 Protein Hnrnpl  ali model follow..  15  9.............KTPASPVVHIRG--LIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQI.................................................................................................................................................................................................................................................................. 74
22 -16.7001wex_A mol:protein length:104 HYPOTHETICAL PROTEIN (RIKEN CDNA 2810036L13)  ali model follow..  19  11.............KVSVSPVVHVRG--LCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPV.................................................................................................................................................................................................................................................................. 76
23 -16.7001sjq_A mol:protein length:105 Polypyrimidine tract-binding protein 1  ali model follow..  17  6.............SGVPSRVIHIRK--LPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSV.................................................................................................................................................................................................................................................................... 69
24 -16.4005mdu_A mol:protein length:157 Rpb7-binding protein seb1  ali model follow..  12  18.............IKVYSRTLFLGG--ITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAAEKAQVAMENVPFADTT-------IRTKWGVGFGPRECSDFSTGISVIPIRLLTDADRTWLVTAEYGGTGGLPITPGIALDEPDIEIGLGISSK................................................................................................................................................................................. 157
25 -16.4002cq1_A mol:protein length:101 PTB-like protein L  ali model follow..  16  3.....SGSSGDKMDGAPSRVLHIRK--LPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAV.................................................................................................................................................................................................................................................................... 74
26 -16.3002m88_A mol:protein length:194 Protein NRD1  ali model follow..  12  29.............IKVYSRTLFIGG--VPLNMKEWDLANVLKPFAEVQSVILNNSRKHAFVKVYSRHEAENVLQNFNK..................................................................................................................................................................................................................................................................... 91
27 -16.3002bz2_A mol:protein length:121 NEGATIVE ELONGATION FACTOR E  ali model follow..  23  29.............APRKGNTLYVYGE----DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQV.................................................................................................................................................................................................................................................................. 92
28 -16.3003r27_A mol:protein length:100 Heterogeneous nuclear ribonucleoprotein L  ali model follow..  15  11.............KTPASPVVHIRG--LIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADN.................................................................................................................................................................................................................................................................... 74
29 -16.3002f9d_A mol:protein length:125 Pre-mRNA branch site protein p14  ali model follow..  15  6.....AKRANIRLPPEVNRILYIRN--LPYKITAEEMYDIFGKYGPIRQIRVGETRGTAYVVYEDIFDAKNACDHLSGFNV.................................................................................................................................................................................................................................................................. 82
30 -16.2001x4g_A mol:protein length:109 Nucleolysin TIAR  ali model follow..  22  21.............SSPKNCTVYCGG--IASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI.................................................................................................................................................................................................................................................................. 86
31 -16.0002n3o_A mol:protein length:123 Polypyrimidine tract-binding protein 1  ali model follow..  17  14.............AGVPSRVIHIRK--LPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSV.................................................................................................................................................................................................................................................................... 77
32 -16.0003lqv_A mol:protein length:115 Pre-mRNA branch site protein p14  ali model follow..  16  1..........IRLPPEVNRILYIRN--LPYKITAEEMYDIFGKYGPIRQIRVGETRGTAYVVYEDIFDAKNAVDHLSGFNV.................................................................................................................................................................................................................................................................. 72
33 -16.0002la4_A mol:protein length:101 Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1  ali model follow..  18  23.............APPRVTTAYIGN--IPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPF.................................................................................................................................................................................................................................................................. 88
34 -15.9003dkq_A mol:protein length:243 PKHD-type hydroxylase Sbal_3634  ali model follow..  16  13..............................................................................................................GMLIEIPNVFSKQEVSHLREQLDARRWIDGNQT------------SGAMATTRKRNQQLDKDDPVAVALGQQIMDRLLAHAALPLQFYPPLFNRYQGGETFGYHIDDGMIRTDLSATLFLGGELVI---QDTYGQQSIKLSAGSLVLYPSSS----LHQVTP--------------------------VLSGERTAAF............................... 184
35 -15.8002wbr_A mol:protein length:89 GW182  ali model follow..  18  3.............MAWGSSWLLLKN--LTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVL-----------------------------ANTTIFAESPSENEVQSIMQH................................................................................................................................................................................................................ 89
36 -15.8002cpj_A mol:protein length:99 Non-POU domain-containing octamer-binding protein  ali model follow..  21  11.............TFTQRSRLFVGN--LPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMP................................................................................................................................................................................................................................................................... 75
37 -15.7001whx_A mol:protein length:111 hypothetical protein RIKEN CDNA 1200009A02  ali model follow..  14  6.............SGRSKTVILAKN--LPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYS.................................................................................................................................................................................................................................................................... 69
38 -15.7005o1x_A mol:protein length:180 Protein NRD1  ali model follow..  12  46.............IKVYSRTLFIGG--VPLNMKEWDLANVLKPFAEVQSVILNNSRKHAFVKVYSRHEAENVLQNFNK..................................................................................................................................................................................................................................................................... 108
39 -15.6001x5p_A mol:protein length:97 Negative elongation factor E  ali model follow..  23  11.............APRKGNTLYVYGE----DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQV.................................................................................................................................................................................................................................................................. 74
40 -15.4002mqm_A mol:protein length:118 Protein Hnrnpl  ali model follow..  13  1..QKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGQAMVEFDSVQSAQRAKASLNGADI.................................................................................................................................................................................................................................................................. 80
41 -15.4005o1w_A mol:protein length:191 Protein NRD1  ali model follow..  12  36.............IKVYSRTLFIGG--VPLNMKEWDLANVLKPFAEVQSVILNNSRKHAFVKVYSRHEAENVLQNFNK..................................................................................................................................................................................................................................................................... 98
42 -15.0001x4f_A mol:protein length:112 Matrin 3  ali model follow..  15  13.....KPDQKFDQKQELGRVIHLSNL-PHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKK.................................................................................................................................................................................................................................................................... 85
43 -14.9001wey_A mol:protein length:104 calcipressin 1  ali model follow..  8  1.............GSSGSSGLIACVANDDESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLHIGSSHLAPPNPDKSGPS................................................................................................................................................................................................................................... 102
44 -14.8002dgu_A mol:protein length:103 Heterogeneous nuclear ribonucleoprotein Q  ali model follow..  22  5...........SSGMAKVKVLFVRN--LANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDL.................................................................................................................................................................................................................................................................. 70
45 -14.7002cpd_A mol:protein length:99 APOBEC-1 stimulating protein  ali model follow..  20  9...........EDTMSSVKILYVRN--LMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVL.................................................................................................................................................................................................................................................................. 76
46 -14.7002fho_B mol:protein length:87 spliceosomal protein p14  ali model follow..  16  3........ANIRLPPEVNRILYIRN--LPYKITAEEMYDIFGKYGPIRQIRVGETRGTAYVVYEDIFDAKNACDHLSGFNV.................................................................................................................................................................................................................................................................. 76
47 -14.6002u1a_A mol:protein length:88 U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A  ali model follow..  14  9.............ENPPNHILFLTN--LPEETNELMLSMLFNQFPGFKEVRLVPGRDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA....................................................................................................................................................................................................................................................... 86
48 -14.5004iw3_A mol:protein length:229 Putative uncharacterized protein  ali model follow..  12  37...............................................................................................................GWSQQAHFLPADLVRALAAECRRRDAEGELNPAGVGRGATQEVRETIRGDQIQWIDPGQAEADQYLAAMDQLRLAINQGLFLGLEDFECHFALYPPGAFYRRHLDRFRDDDRRMVSAVLHDGGQLRMFLADGVEHDVEPVAGCLVVFLSGEVP---HEVLPAGRE---------------------------RLSLTFRRRGNDP....................... 222
49 -14.5002ytc_A mol:protein length:85 Pre-mRNA-splicing factor RBM22  ali model follow..  15  8.............EDKTITTLYVGG--LGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEK........................................................................................................................................................................................................................................................................ 67
50 -14.4005cyj_A mol:protein length:98 RNA-binding protein with multiple splicing  ali model follow..  16  6.............QEEEVRTLFVSG--LPLDIKPRELYLLFRPFKGYEGSLITSKQPVGFVSFDSRSEAEAAKNAMNGIRFDPEIPQTLRLEFA..................................................................................................................................................................................................................................................... 86
51 -14.4002aym_A mol:protein length:83 U1 small nuclear ribonucleoprotein A  ali model follow..  21  2...........QTEQPPNQILFLTN--LPEETNEMMLSMLFNQFPGFKEVRLVPNRDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFA....................................................................................................................................................................................................................................................... 81
52 -14.3005det_A mol:protein length:98 RNA-binding protein with multiple splicing  ali model follow..  17  6.............QEEEVRTLFVSG--LPLDIKPRELYLLFRPFKGYEGSLITSKQPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFA..................................................................................................................................................................................................................................................... 86
53 -14.2002kxn_B mol:protein length:129 Transformer-2 protein homolog beta  ali model follow..  22  28.....SRHVGNRANPDPNCCLGV--FGLSLYTTERDLREVFSKYGPIADVSIVRSRGFAFVYFENVDDAKEAKERANGMEL.................................................................................................................................................................................................................................................................. 107
54 -14.2002ku7_A mol:protein length:140 MLL1 PHD3-Cyp33 RRM chimeric protein  ali model follow..  17  59.............SATTKRVLYVGG--LAEEVDDKVLHAAFIPFGDITDIQIPLDRGFAFVEFELAEDAAAAIDNMNESEL.................................................................................................................................................................................................................................................................. 130
55 -14.1002cpx_A mol:protein length:115 Hypothetical protein FLJ11016  ali model follow..  14  21.............PGEPNKVLYLKN--LSPRVTERDLVSLFARFQEKKGPPIQRMRGQAFITFPNKEIAWQALHLVNGYKL.................................................................................................................................................................................................................................................................. 92
56 -14.1002cqi_A mol:protein length:103 Nucleolysin TIAR  ali model follow..  21  3.....SGSSGMMEDDGQPRTLYVGN--LSRDVTEVLILQLFSQIGPCKSCKMISNDPYCFVEFYEHRDAAAALAAMNGRKI.................................................................................................................................................................................................................................................................. 80
57 -14.0003egn_A mol:protein length:143 RNA-binding protein 40  ali model follow..  14  41.............PGEPNCRIYVKN--LAKHVQEKDLKYIFGRYVDFSSETQRRMKGQAFIGLPNEKAAAKALKEANGYVL.................................................................................................................................................................................................................................................................. 117
58 -14.0006cmn_A mol:protein length:119 TAR-Binding Protein 6.7  ali model follow..  12  20.............ETRPNHTIYINNLNSKIKKDKKSLHAIFSRFGQILDILVPRQRGQAFVIFKEVSSATNALRSMQG..................................................................................................................................................................................................................................................................... 89
59 -14.0001x4d_A mol:protein length:102 Matrin 3  ali model follow..  20  11.............RVETRRVVHIMDFQRGK-NLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYT...................................................................................................................................................................................................................................................................... 73
60 -13.9005oo6_B mol:protein length:158 Nuclear cap-binding protein subunit 2  ali model follow..  21  30......DNEEQEKLLKKSCTLYVGN--LSFYTTEEQIYELFSKSGDIKKIIMGLDKGFCFVEYYSRADAENAMRYINGTRL.................................................................................................................................................................................................................................................................. 108
61 -13.9006g6s_A mol:protein length:95 Apoptotic chromatin condensation inducer in the nucleus  ali model follow..  15  1............GSGKISNIVHISN--LVRPFTLGQLKELLGRTGTLVEFWIDKIKSHCFVTYSTVEEAVATRTALHGVKWPQSNPKFLCADYAEQDELD............................................................................................................................................................................................................................................... 88
62 -13.9002lea_A mol:protein length:135 Serine/arginine-rich splicing factor 2  ali model follow..  25  37.............DVEGMTSLKVDN--LTYRTSPDTLRRVFEKYGRVGDVYIPESRGFAFVRFHDKRDAEDAMDAMDGA.................................................................................................................................................................................................................................................................... 106
63 -13.8006d0y_A mol:protein length:176 Nuclear cap-binding protein subunit 2  ali model follow..  21  48......DNEEQEKLLKKSCTLYVGN--LSFYTTEEQIYELFSKSGDIKKIIMGLDKGFCFVEYYSRADAENAMRYINGTRL.................................................................................................................................................................................................................................................................. 126
64 -13.8005o2v_A mol:protein length:92 Nucleolysin TIA-1 isoform p40  ali model follow..  20  1............MEDEMPKTLYVGN--LSRDVTEALILQLFSQIGPCKNCKMIMDDPYCFVEFHEHRHAAAALAAMNGRKI.................................................................................................................................................................................................................................................................. 71
65 -13.7002cqh_A mol:protein length:93 IGF-II mRNA-binding protein 2 isoform a  ali model follow..  25  2...........SSGSSGMNKLYIGN--LSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGK.................................................................................................................................................................................................................................................................... 67
66 -13.7005gmk_a mol:protein length:111 U2 small nuclear ribonucleoprotein B``  ali model follow..  25  23.............VTEAKNTLYVSQLNEKINMQRVNLFLLFATFGEVLKVSMNFKKQQAFITMRTIDQASLAQISLNGERF.................................................................................................................................................................................................................................................................. 94
67 -13.7006g90_A mol:protein length:298 U1 small nuclear ribonucleoprotein A,U1 small nuclear ribonucleoprotein A,U1 small nuclear ribonucleoprotein A,U1 small nuclear ribonucleoprotein A,U1 small nuclear ribonucleoprotein A  ali model follow..  19  222.............ENPPNKVLLIQN--LPSGTTEQLLSQILGNEALVE-IRLVSVRNLAFVEYETVADATKIKNQLGS..................................................................................................................................................................................................................................................................... 283
68 -13.6002kn4_A mol:protein length:158 Immunoglobulin G-binding protein G, Splicing factor; arginine/serine-rich 2  ali model follow..  25  60.............DVEGMTSLKVDN--LTYRTSPDTLRRVFEKYGRVGDVYIPESRGFAFVRFHDKRDAEDAMDAMDGAVL.................................................................................................................................................................................................................................................................. 131
69 -13.6002jvo_A mol:protein length:108 Nucleolar protein 3  ali model follow..  15  21.............GELSNTRLFVRP--FPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKS................................................................................................................................................................................................................................................................... 83
70 -13.6002dk2_A mol:protein length:97 Heterogeneous nuclear ribonucleoprotein R  ali model follow..  25  11.............VMAKVKVLFVRN--LATTVTEEILEKSFSEFGKLERVKKL--KDYAFVHFEDRGAAVKAMDEMNGKEI.................................................................................................................................................................................................................................................................. 74
71 -13.6006ax6_A mol:protein length:235 Procollagen lysyl hydroxylase and glycosyltransferase  ali model follow..  13  11..................................................................RGSVPTEVTLYDLPTRKEEWEKKYLHPEFLSHLQNFKDFDYTEICNDVYSFPLFTPAFCKEVIEVMDKANLWSKGGDSYFDPRIGGVESYPTQDTQLYEVGLDKQWHYVVFNYVAPFVRHLYNNY-KTKDINLAFVVKYDMERQLAPHHDS-STYTLNIALNEYGKE--CEFIRHKFIWQG---KVGYATIHAGKLLA--YHRALP--------------------------ITSGKRYILV............................... 225
72 -13.6002x1f_A mol:protein length:96 MRNA 3`-END-PROCESSING PROTEIN RNA15  ali model follow..  24  1................PSRVVYLGS--IPYDQTEEQILDLCSNVGPVINLKMMFDKGYAFIEFRDLESSASAVRNLNGYQL.................................................................................................................................................................................................................................................................. 69
73 -13.5003s8s_A mol:protein length:110 Histone-lysine N-methyltransferase SETD1A  ali model follow..  16  2.............GQIPLKEVTFAR--LNDNVRETFLKDMCRKYGEVEEVEILKHLGLARVLFTSTRGAKETVKNLHLTSV.................................................................................................................................................................................................................................................................. 73
74 -13.5003ex7_B mol:protein length:126 RNA-binding protein 8A  ali model follow..  19  18.............RSVEGWILFVTG--VHEEATEEDIHDKFAEYGEIKNIHLNLDKGYTLVEYETYKEAQAAMEGLNGQDL.................................................................................................................................................................................................................................................................. 89
75 -13.4002m9k_A mol:protein length:93 RNA-binding protein with multiple splicing 2  ali model follow..  16  2..............EEEVRTLFVSG--LPVDIKPRELYLLFRPFKGYEGSLITARQPVGFVIFDSRAGAEAAKNALNGIRFDPENPQTLRLEFA..................................................................................................................................................................................................................................................... 81
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.