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Query: 3ufi_A mol:protein length:297 hypothetical protein BACOVA_04980, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GDEESGKADRAYKPIEIYGNINEVVNNVQETRAVGAAWGSDDRIGVTVEADEDNATANAVDTYINIQYRNETGGSFRVVNEGSTDNNIRLKGEGEFTLNAYYPYQGANGTLPGTEGVIAKTISGADQTTDKQPQIDFLFAQATGVRAESPVTFDFSHKMTKIILKFKATNGATLNNMKVYLKSLQLEGSFNVTTGEAVAKSGATPNSELSMDIAKPAEGEMTASIILFPQDMPEKVLLEVRMNDETYTQYMPVQNLESGHAYPYNVTFENPAMTITKAEIEDWIVEDDKDVTASVTELast
1 -97.5003ufi_A mol:protein length:297 hypothetical protein BACOVA_04980  ali model  100  1GDEESGKADRAYKPIEIYGNINEVVNNVQETRAVGAAWGSDDRIGVTVEADEDNATANAVDTYINIQYRNETGGSFRVVNEGSTDNNIRLKGEGEFTLNAYYPYQGANGTLPGTEGVIAKTISGADQTTDKQPQIDFLFAQATGVRAESPVTFDFSHKMTKIILKFKATNGATLNNMKVYLKSLQLEGSFNVTTGEAVAKSGATPNSELSMDIAKPAEGEMTASIILFPQDMPEKVLLEVRMNDETYTQYMPVQNLESGHAYPYNVTFENPAMTITKAEIEDWIVEDDKDVTASVTE 297
2 -70.4004k4k_A mol:protein length:282 Putative cell adhesion protein  ali model follow..  17  1GGENTPQPTDGRVALEATSGIR------MNTRAYDKTWEAGDAIGIYMLNGDATDGNG------NRKYTTAQTAENGSFTAAEGQTIYFPVDASQRDFVAYYPYRETLADGNV--------YTVDVSVQTPQKDIDLMGAAKVEDKTDPKVAFVFTHKLVKLDITIKADGTSDLAGTTVSISNQQTAATYNVVTGGDATVTTGTTKEI------VLHTDGLKAEGIVLPAASTAGMALTFTVPGLDVNSAAQSKAFVAGSKYLYTITISKAGVEV-SSKVEDWTPGNGGGETGNAE. 282
3 -65.4003sy6_A mol:protein length:291 Fimbrial protein BF1861  ali model follow..  14  1GEQEDKVSGEKTLAVV-------SASSDDRPSTRGIINDNTYALGVFRTTANTYAP------LYNVKHIYSGGE-------WGADDVIKV-DYRNASFFAYYPYHTATGNYAG----LAGGTTLTLQAQLFNAGEDICYGGPVSVYNPFVEFLNMKHAYARLRLTLTRGEKFDKTKFKSNNANFYLTRSLDIASTAGATGGSAVAAGYVHNNVNIATGKSVTYEYMFPPQPLDGKLTILVTVDGVTRSCDISGSSLDSGKYYGVSLTFTDVGIILSSAVVTVNNFGGQGNTQVDTE. 290
4 -64.8003t2l_A mol:protein length:308 Putative cell adhesion protein  ali model follow..  13  1GEMDDGRWKASALRVPLQVSSAVIKQEVVTRLAPDPVPLTEGAIGIFLSGTEPEQEDSGYKVIDNRKYVYSEGH------GPPTANDTIYLVGNDADVCAYYPYKDSYTD----------KTVIPLQSQDYVETEDIYYALNTMNGFTPAITFDMVHAYSLVELKISRENYFEISKITLKNSNLIKKGTINIAVDGSIHSSETGNYDLTTVTHTLSVGESYVCRVLMIPVPLKIGLSVSLVIDGQQMLVEIPLGEFRQGEKYVIGLKIKGTEIVP-TVKALEWEDEEVNGGNKYPVE 308
5 -62.9004dgu_A mol:protein length:247 putative cell adhesion protein  ali model follow..  12  1GDELQ---ETSKEATNFSISIDDALSD-PLTRTSNDLFPARNSITTGEVISMAASGQD------YTPFIVGKDSRAWNE---------IGTATGTVTFYAHYPALTD-----------EAATRSGGNKRYLKGGQEHLFGTAEAAPGSQNVSLKFKRMTVPVIILDENDRPY--EGEAKVELSLKNEGTQDLLNGTIEINENALSEN------IEVKKVSEGVTTNVLPQKIAGEEIGTITVGGVTQKISAVDLDLKAGSTLSVRLSKKFGGGII-DGNVPLYR............. 247
6 -57.8004qb7_A mol:protein length:359 Uncharacterized protein  ali model follow..  14  1G-EMTEMNPDTNRTIGLDVYTE------VQTRGTTSTLKANAGFGIFAYQTSSAKGNTTPNFMYNEHATWTSDS-------GYTNLRFWPIDDKKITFFAYAPYESKPEVGTDQKITLSGQNAKGKTSNNWKDMIDLVTDCHTNESNKGTVQFKFSHVLTQIANIKVKPDVNLGTDTKIFVTGLKNKAVYKFDNDTWEAISPDASYFSTEQDQNATALFSDTEALYFIPVNNKNDLKLKINYDITNKEVSLPKNTFKKGTKHTYVLTIKMNAIKITEDNMEGWTDDSDSDINVE... 358
7 -52.0004h40_A mol:protein length:327 putative cell adhesion protein  ali model follow..  14  4GSPEEDMEDRVRIDPVAGGYYP-SISPSAQTRGATPDLEDGSTIRLVVYDDAKNLLEETSGSSLLYPCEVDDNGAV-----ISSSSTPLYMKAGTYYFRILSPAKALNSKGFVNIGNEYLLATDDRYTQTAMTAVTITKIDEGGNNVQTLYLPPIINQTARMQFTVRAGEGVHMLAEGIEISGIQQPLDNTTSFDWVNGDVLPVKVGDQSASATRNADNSLVAHTGVLPTDARSSVLLNLKVNGNQYQMLLTGLYLTAGHSYNYTATVKISNVTVLTWQNRSWTENVVMD....... 326
8 -41.7004eps_A mol:protein length:510 hypothetical protein  ali model follow..  14  1GEEEVP--GNVRNGIVLNVTDTGIISNEPSTRTEDTTFTQGDQIGLFAVKDGAI-----LDEINNMPFTFNGSS-------WSGKPILYDDRLVGVNFYAYYPYQSEMTGKTDLIGAAGWELTTEQSDQKAYAKQDLMTSNATGENGNYSLSFQLTHRMSLVVVKLPSTRYIFTDAEGVAMPEETPYVAMSVDVAFYLDNVEEGTKIS-----PYYDAKKDEYRLLRKPSSENQ---IIGHYNDKQCTLDTAE-KMKEGKYKRFVVDGGYKEVT....................... 265
9 -19.3004gpv_A mol:protein length:348 putative cell adhesion protein  ali model follow..  11  4.EVENLGNNVPGEQAVLTIKLKGDGDNQAQSRAAGPATDTEDNYLVFLFREGGA--------LDCAPYEGSSNAAATITTGTTAAKKAYVVANTGALAGGLFATVKTETDLLAVTGSLMDNTDNASTQTKTNLWMSGESEVKFNGGTNAQVTVSLSFVAAKIQLIVKDNRTITITDDAAVLLFAGKKGRF-SDAVSPGDFTINAGSTVFNHFYTFGNDGTTQPTILAIKSTKTVGIFYPILFTNTD-----ARHTIEPGKSYTVTVTLNGDVAAGGTVTAAQWVTQP.......... 342
10 -18.0004jg5_A mol:protein length:355 Putative cell adhesion protein  ali model follow..  8  1GKDEDPVLPLEGAKLSVAVKASGTATKAYNPNDVNELEGEANNLAVVVFNETGT----------ELLGYKWEALSGAEHSAIIADVPTTKAVRARIIVLANVPRDLLSTVSTYDEFQTRLVDLSSQSQTNLTMSSQVIVTKGDQNVDGISDPILLTRVAARIDLVNISTRGREVRIDAVGIYNMKTKSYYDTSFEDLLVNDGTSISNTPFVHYVMENMKSDDHTMIAVKATLRGNKIFTAVINAGGLQNGYDHNFIRRNYVYRLRIYFDGESFD-IAVQVVGWGPVM.......... 349
11 -17.3005nf4_A mol:protein length:451 Minor fimbrium tip subunit Mfa3  ali model follow..  7  22.RGVDPQPDPLQPDVYLLVNARAAHTNGEESINMDAEDFEDHSLAMLVFDSNTGETVKLKPGQRDFFFVANIPNMQTAMASIVNKS----------DMNHFMQVFRDLDPIHYHNATNNNGFPMSRMYSNQTVTIGGTITQPLPFKPDGENNVKLQRVVAKLDVNIVEGV---ENLQKIELCNANVHYRLAIVESTKWWGNTGNAENKPINFFRLTTRGGLVYDVPIITHEGAIPGGQYLPFAKGL-LADKPSYTVYRNRHYIYRIKTLPDKIEV-KYSICDWNIVTND........ 346
12 -17.2003up6_A mol:protein length:347 hypothetical protein BACOVA_04078  ali model follow..  8  1..........GDVAYELPAHTTRAQLSIDLVNNGDVEQQE-NSMRFIVFGSTPGGV--------RLDVNEHILLSTPETATDIDAQLLEVTSSNDILVVVIANEPQSLTSQLDGIANLLLNSDGQIISATGMPMTGVIRDISIAPDETKTVQMVIERAVARVDVFIEAIDGGTAGSTSVTLHNFSHDSYFSESNLLTHSWTAATTETWAYSSAPGAENRKLLCSFYTAERLFKSDISMANVLKGPSDV-AQPFTEIRRNNVYQVTARVGKIGIQILTISVEDWGERQDIDLDMDL.. 347
13 -15.3004rdb_A mol:protein length:305 Immunoreactive 32 kDa antigen PG49  ali model follow..  10  1GDR----------SIEISIRVDDFTKTGEAVRYERNQGSAAENLYLLLFDQSGANPAKYYITGN----TFTGGTWLPDDMKVKLDMTQSEAGERKVYVVANVDVKTALDAVANESDLQTVKRTTAMPWSTDIASPFLMSGNKTHLANRLLDNVPLVRAIAKVELNISLSEKFSLSEFKFRYVNFDKETYVPAPDAGTGYTLDANGKVTALRIVTYLNERDSKGATVEVALPRVDDGTLPPPEFGPELYRLPLPDKILRNHWYKYEVEI............................. 305
14 -14.8004q98_A mol:protein length:369 Major fimbrial subunit protein  ali model follow..  10  1GKDNEA-EPVVETNATVSFIIK-----SGESRAVGDDLTDATKLTAMVYAGQVQTVEEDGGVLKVEGIPCKSGANRVLVVVANHNYELTGKSLNEVEALT----TSLTAENQNAKNLIMTGKSAAFTIKPGSNHYGYPGGTASDNLVSAGTPLAVTRVHAGISFAGVEVNSFKPADAKIAALVAKKDSKITYELEASLNTNYAVGAGFYVLESKYDASNELRPTILCIYGKLLDKINAGFCDGDGTTYYPVGQNKIVRNNHYKISLNITGPGLNV-TCQVTPWVVVNQA........ 366
15 -14.8003liu_A mol:protein length:402 Putative cell adhesion protein  ali model follow..  10  1GDDNEIEIPKAPVLEKAQLALAIKSEEGAVTKTGETTPTDANTLTVGVFGVDGW--------------SVIYTKDATPNSDGTKDVGPQEVYAGEAHVVVVANAAPVIQTELAKAKDITDFIETTINLSDETLTKGLTMSSKSGKEVYGAGPVPLVRDVASIALAGADIGSKSFVLKEVFIASAKGVSSVASTEEWGTIEKDENTKGEVKSGESNVNEAYANHTLLIVKGDTKENCYYAIPVGEEVTIDGTEKRSVQRNYKYEISLTIIGPGVSA-SVKVEPWNVKTI-HEEVE... 402
16 -14.3003gf8_A mol:protein length:296 putative polysaccharide binding proteins (DUF1812)  ali model follow..  5  8....NEDLPECRLSVKFKYDYNMEFADAFHAQV--------DKVELYVFDKNGKYLFKQAEEGSALS--------------TGNYLMEVELPVGQYQFMAWAGARDSYDPGVSTLTDLKLKLKREASLIINKRMETLWYGEVIDGTVHQTETINLIRDTKIVRFGFQGSWTLDMNDYDYEIIESNGHLGHD------NSLLDDDVLSFRPYYMEQKDPATAYVDMNTMRLMEDRKTRLVLTEKASGKRVLSTQEYLDRQSNYHIIFFLSESWLAV-QIVVNGWV............. 288
17 -12.4004qdg_A mol:protein length:310 Putative adhesin  ali model follow..  8  5..YEDLAPCPHGVSLRFIYDYNMEYANAFAKKV--------DCLTLLVYDENGNYVDTRIVTGTELQ--------------DENYRMKLDLKQGNYHFVAYGGLACNKSSFLMKYTDLQVELDSECLTNPRRKNLHGLYLTLATADLYSEGTVEMMKNTNNIRVVLQQMNGEPVDDKKFEFEITDDNILFSYDSAGFTDEGREVVVAYAELSTSRLMVRDWYSPKLTVRRKADGVEIINIPLINYLLMLKSDQEFLDRESEWSMIFFLSPNLEWIKYIKINDWTVRIN-----DIRQ 310
18 -11.6005cag_A mol:protein length:318 Uncharacterized protein  ali model follow..  9  67.............................................................................................GRYSVVVYIRIRGEESYETIEAYTGNCNGLGIEGTEKMVWSPDSLYVLNEKSEEVLRLDWKLESVVKKYSFAVEAKGLEYVATVVGSIDGL--SDCYCIGKGRGVCSSQPTAFFTAFKQVKEMTMPTRMSTSERETSSEKGAIILILKF------------IKTDNTVQEATIDVTEPEIELPGGNVDGWGPEDNVELPVN... 318
19 -11.5003r4r_A mol:protein length:296 hypothetical fimbrial assembly protein  ali model follow..  11  1G-EVPIGFDTDELSFDMSLVLL---TGDMQTKASDPNYTYAQNCHVAVFDKDGKRIYFKNFYSKDLG-EMKTIGNLSGYELQLEGVRTFGKEDKKVSVLVVA-NNSPFDNLTTYDGVDNSYTAKTIAKGPVTASLLVKIGKSEYNQDNAPVTVSLIQLSAKIEYTGVYKKENGELLEGFSLTKVAG---LNASSKITIFNTSAVENGAFSDLAYPTTKPVTFYTY----SDAFKEVILSVQSGVEPKEYPFPANKFIKGNYYRIKGLKSSTEIEWVLENVED............... 287
20 -11.1005dhm_C mol:protein length:282 Immunoreactive 32 kDa antigen  ali model follow..  9  1.............................ERNQGSAAERLITNLYLLLFDQSGANPAKYYIAGNTFSGGIWLPDDMKVKLDMTQSE----AGERKVYVVANVDVKTALDAVANESDLQTVKRTTAMPWSTDIASPFLMSGNKTFLANRLLDNVPLVRAIAKVELNISLSEKFSLSEFKFRYVNFDKETYVPAPDAGTGYTLDANGKVTALRIVTYLNERDSKGATVEVALPRVDDGTLPPPEFGPELYRLPLPDKILRNHWYKYEVEI............................. 282
21 -9.5305nfi_B mol:protein length:281 Minor fimbrium anchoring subunit Mfa2  ali model follow..  8  7..............VNFYSQTECAENPSYPAEV--------ARLNVYAFDKDGILRSANVFEDVQLS---------------AKEWLIPLEKDGLYTIFAWGNIDDEIKIGETTKQQVLMRLKQDGKWATNIDGTTLWYATSPVVELKNHTRANLREYTNRVTVSVDSLP--HPENYEIKLASSNGSYRFD-------GTVAKADSTYYPGETKVVGDSTCRAFFTTLKLESGHENTLSVTHKPTGREIF-QNINLRCINDFDIRLVAPDDTYVVVQIWINGWL............. 277
22 -9.4503pay_A mol:protein length:314 putative adhesin  ali model follow..  6  8.....EDLPRCELWLEFVFDYNMEYADAFNPQV--------KSVDVLVFDSDD-------------KLLFTKSVKVAALVGGNRMSLTDELDFGSYKVLTVGSLSDRFRLSDNAGNKLQVIVSLKRETGGVNFEFQHLYDHLPSNTNHKIYPVNLIRDTNRFNLALMGYEENKVDGTQYTFE--PENAVYSWENEPTGQGPITYVPYYTGPGEISDVVMSARLNTMRLLNRSGWDYKFIIRDANTEAEVLPFQEYLDRQSEWNLVFTVVEKNGGGIGIVVGTWI............. 306
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.