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Query: 3vgp_A mol:protein length:164 Transmembrane oligosaccharyl transferase, putative, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GPDLTEDWKEALEWMRTSLEEQNYLNPYEKPEYSVMSWWDYGNWILYVSKKAVVANNFQAGAVDAAKFFTAKSEDEAIKIAKKRGVRYVVTADEITMKDANNTKFPAIMRIAGYNVDLMTEGEILNFFNHTVLYRLHMENAENLTHFRLVKEFGDVKIFEVVGSLast
1 -96.7003vgp_A mol:protein length:164 Transmembrane oligosaccharyl transferase, putative  ali model  100  1GPDLTEDWKEALEWMRTSLEEQNYLNPYEKPEYSVMSWWDYGNWILYVSKKAVVANNFQAGAVDAAKFFTAKSEDEAIKIAKKRGVRYVVTADEITMKDANNTKFPAIMRIAGYNVDLMTEGEILNFFNHTVLYRLHMENAENLTHFRLVKEFGDVKIFEVVGS 164
2 -85.3003vu0_A mol:protein length:162 Putative uncharacterized protein  ali model follow..  68  3...MTMDWKEALNWMKENLEAQDYLKAYEKPDYAVLSWWDYGNWILYVAKKAVVCNNFQAGADDAAKFFTAQSEEEAMKIVEKRKVRYVVTVEELTKPETNKTKFIPIMQIAGYSPEYMKNKEIIDFFNKTMLYKLHVENATNLTHFRLLKNFGTVKIFEV... 161
3 -53.1006c26_A mol:protein length:718 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3  ali model follow..  21  490.LALIDDFREAYYWLRMNSDEDS----------KVAAWWDYGYQIGGMADRTTLVDNNTWNNTHIAIVAMASPEEKSYEILKEHDVDYVLVIFGGLFGGDDINKFLWMIRISEGIWPEEVDARASETMRNSLLYKMSYKDFPPLDYFDEVFTSENVRIYQLK.. 683
4 -51.9006ftg_5 mol:protein length:705 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A  ali model follow..  21  499.RIIFDDFREAYYWLRHNTPED----------AKVMSWWDYGYQITAMANRTILVDNNTWNNTHISRVAMASTEEKAYEIMRELDVSYVLVIFGGLYSSDDINKFLWMVRIGGSTDTGKVDREGSPVLLNCLMYKMCYYRFGQLDVLEEAYTTEHVRIYKVK.. 695
5 -47.9002lgz_A mol:protein length:273 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3  ali model follow..  20  38KLALIDDFREAYYWLRMNSDED----------SKVAAWWDYGYQIGGMADRTTLVDNNTWNNTHIAGKANASPEEKSYEILKEHDVDYVLVIFGGLFGGDDINKFLWNIRISEGIWPEEVDARASETMRNSLLYKMSYKDFPPLDYFDEVFTSENVRIYQLK.. 232
6 -43.6003wai_A mol:protein length:739 Maltose-binding periplasmic protein, Transmembrane oligosaccharyl transferase  ali model follow..  33  373......QWYDALTWMRENTPDGEKYFSYPFETYGVISWWDYGHWIEAVAHRMPIANPFQAGIPGASSFFTAENESYAEFVAEKLNVKYVVSDIEME-----TGKYYAMAVWAEGDLPLAEKRIPSELYYSTMEAKLHLFDGSGLSHYRMIYES........... 570
7 -41.9003aag_A mol:protein length:291 General glycosylation pathway protein  ali model follow..  16  1GTVFSQNEASLLNQLKNIANREDY----------VVTWWDYGYPVRYYSDVKTLVDGGKHLGKDNPSFALSKDEQAAANMARLSVEYYLYMPARMSLIFSTVASFSFIFYLKDSAIPYAQFILMDKTMFNSAYVQMFFLGNYDKNLFDLVINSRDAKVFKL... 289
8 -36.2003rce_A mol:protein length:724 Oligosaccharide transferase to N-glycosylate proteins  ali model follow..  15  437.TVFTSYEASILNDLKNKAQREDY----------VVAWWDYGYPIRYYSDVKTLIDGGKHLGKDNSSFVLSKEQIPAANMARLSVEYYIYMPYRMLRIMPVVAQFANTNPDNGELREYKSFVILDESLYNSAYIQMFLLNQYDQDLFEQVTNDTRAKIYRLKRE 713
9 -35.7005ogl_A mol:protein length:713 Undecaprenyl-diphosphooligosaccharide--protein glycotransferase  ali model follow..  14  437.TVFTSYEASILNDLKNKAQREDY----------VVAWWDYGYPIRYYSDVKTLIDGGKHLGKDFSSFVLSKEQIPAANMARLSVEYYIYMPYRMLRIMPVVAQFANTNPDNGELREYKSYVILDESLYNSSYIQMFLLNQYDQDLFEQITNDTRAKIYRLKRE 713
10 -30.1003waj_A mol:protein length:875 Transmembrane oligosaccharyl transferase  ali model follow..  30  497.GGPNKQWYDALTWMRENTPDGEKYFSYPFETYGVISWWDYGHWIEAVAHRMPIANPFQAGIGNASSFFTAENESYAEFVAEKLNVKYVVSDIEMETGPTGTFGYANSQWDIPLNSIIIPLRIPSELYYSTMEAKLHLFDGSGLSHYRMIYES........... 699
11 -24.2003wov_A mol:protein length:512 Oligosaccharyl transferase  ali model follow..  17  13SEIETTGWEQVLKWLNENTSKYAT----------ATSWWDYGYWISLLGHRRASADGGHARDRHILALFLARDGNVSEVDFESWELNYFIIY------LNDWAKFNAISYLGGAITRREYNGDETYKVATSNFIKLAFNIPKLYSNFVPVYGYGNVIVYEFR.. 259
12 -24.2002zag_A mol:protein length:497 Oligosaccharyl transferase stt3 subunit related protein  ali model follow..  20  14TEIETSGWEDALKWLRENTPEYS----------TATSWWDYGYWISLLGQRRASADGGHARDRDILALFLARDGNISEVDFESWELNYFLVY------LNDWAKFNAISYLGGAITRREYNGDESYKVATANFIKLAFFSDKLFSNFEPVYESGNVIVYRFT.. 255
13 -24.1003vu1_A mol:protein length:506 Putative uncharacterized protein PH0242  ali model follow..  19  7.EIEVTGWEQALKWLRSNTSKYA----------TATSWWDYGYWIELLGNRRASADGGHARDRDILALFLARDGNISEVDFESWELNYFIIY------LNDWAKFNAISYLGGAITRKEYNGDENYKVATSNFVKLAFGIPTSFSNFIPVYQYGSVIVYEFR.. 251
14 -9.1905aza_A mol:protein length:872 Maltose-binding periplasmic protein,Oligosaccharyl transferase stt3 subunit related protein  ali model follow..  19  384.AKAAAAWEDALKWLRENTPEYST----------ATSWWDYGYWIESLGQRRASADGGHRDRDHILALFLARDGNISEVDFESWELNYFLVY------LNDWAKFNAISYLGGAITRREYNGDESGRGAVTTLLPLPRYGEKYVNLYKVIVDVSNSSVKVTVGD 534
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.