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Query: 3vu0_A mol:protein length:162 Putative uncharacterized protein, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEMTMDWKEALNWMKENLEAQDYLKAYEKPDYAVLSWWDYGNWILYVAKKAVVCNNFQAGADDAAKFFTAQSEEEAMKIVEKRKVRYVVTVEELTVKPETNKTKFIPIMQIAGYSPEYMKNKEIIDFFNKTMLYKLHVENATNLTHFRLLKNFGTVKIFEVKLast
1 -98.3003vu0_A mol:protein length:162 Putative uncharacterized protein  ali model  100  1MEMTMDWKEALNWMKENLEAQDYLKAYEKPDYAVLSWWDYGNWILYVAKKAVVCNNFQAGADDAAKFFTAQSEEEAMKIVEKRKVRYVVTVEELTVKPETNKTKFIPIMQIAGYSPEYMKNKEIIDFFNKTMLYKLHVENATNLTHFRLLKNFGTVKIFEVK 162
2 -85.3003vgp_A mol:protein length:164 Transmembrane oligosaccharyl transferase, putative  ali model follow..  68  4..LTEDWKEALEWMRTSLEEQNYLNPYEKPEYSVMSWWDYGNWILYVSKKAVVANNFQAGAVDAAKFFTAKSEDEAIKIAKKRGVRYVVTADEIT-MKDANNTKFPAIMRIAGYNVDLMTEGEILNFFNHTVLYRLHMENAENLTHFRLVKEFGDVKIFEV. 161
3 -53.5006c26_A mol:protein length:718 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3  ali model follow..  22  491.ALIDDFREAYYWLRMNSDE----------DSKVAAWWDYGYQIGGMADRTTLVDNNTWNNTHIAIVAMASPEEKSYEILKEHDVDYVLVIFGGLIFGGDDINKFLWMIRISEGIGEYRVDARASETMRNSLLYKMSYKDFPPLDYFDEVFTSENVRIYQLK 683
4 -52.6006ftg_5 mol:protein length:705 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A  ali model follow..  22  500.IIFDDFREAYYWLRHNTPE----------DAKVMSWWDYGYQITAMANRTILVDNNTWNNTHISRVAMASTEEKAYEIMRELDVSYVLVIFGGLTYSSDDINKFLWMVRIGGSTDTGKVDREGSPVLLNCLMYKMCYYRFGQLDVLEEAYTTEHVRIYKVK 695
5 -47.6002lgz_A mol:protein length:273 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3  ali model follow..  21  40.ALIDDFREAYYWLRMNSDE----------DSKVAAWWDYGYQIGGMADRTTLVDNNTWNNTHIAGKANASPEEKSYEILKEHDVDYVLVIFGGLIFGGDDINKFLWNIRISEGIWPEEVDARASETMRNSLLYKMSYKDFPPLDYFDEVFTSENVRIYQLK 232
6 -44.2003wai_A mol:protein length:739 Maltose-binding periplasmic protein, Transmembrane oligosaccharyl transferase  ali model follow..  32  368AQTNKQWYDALTWMRENTPDGEKYDSYPFETYGVISWWDYGHWIEAVAHRMPIANPFQAGIPGASSFFTAENESYAEFVAEKLNVKYVVSDIEME------TGKYYAMAVWAEGDLPLAEKRIPSELYYSTMEAKLHLFDGSGLSHYRMIYES......... 570
7 -42.0003aag_A mol:protein length:291 General glycosylation pathway protein  ali model follow..  13  11..FSQNEASLLNQLKNIANREDY----------VVTWWDYGYPVRYYSDVKTLVDGGKHLGKDNPSFALSKDEQAAANMARLSVEYTEKSFYAPQNDILKSDILQAMMKDYNQSNVDLFLASLMDKTMFNSAYVQMFFLGNYDKNLFDLVINSRDAKVFKLK 290
8 -35.7003rce_A mol:protein length:724 Oligosaccharide transferase to N-glycosylate proteins  ali model follow..  17  438.VFTSYEASILNDLKNKAQREDY----------VVAWWDYGYPIRYYSDVKTLIDGGKHLGKDNSSFVLSKEQIPAANMARLSVEYYIYMPYRM-------LRIMPVVAQFAN-LREYKSFVILDESLYNSAYIQMFLLNQYDQDLFEQVTNDTRAKIYRLK 711
9 -35.1005ogl_A mol:protein length:713 Undecaprenyl-diphosphooligosaccharide--protein glycotransferase  ali model follow..  17  439..FTSYEASILNDLKNKAQREDY----------VVAWWDYGYPIRYYSDVKTLIDGGKHLGKDFSSFVLSKEQIPAANMARLSVEYYIYMPYRM-------LRIMPVVAQFAN-LREYKSYVILDESLYNSSYIQMFLLNQYDQDLFEQITNDTRAKIYRLK 711
10 -29.9003waj_A mol:protein length:875 Transmembrane oligosaccharyl transferase  ali model follow..  30  498.GPNKQWYDALTWMRENTPDGEKYFSYPFETYGVISWWDYGHWIEAVAHRMPIANPFQAGIGNASSFFTAENESYAEFVAEKLNVKYVVSDIEMETGKYYAMAVWANSQWDIPLNSIIIPLRIPSELYYSTMEAKLHLFDGSGLSHYRMIYES......... 699
11 -24.2003wov_A mol:protein length:512 Oligosaccharyl transferase  ali model follow..  18  16..ETTGWEQVLKWLNENTSK----------YATATSWWDYGYWISLLGHRRASADGGHARDRHILALFLARDGNVSEVDFESWELNYFIIY-------LNDWAKFNAISYLGGAITRREYNGITYYKVATSNFIKLAFNIPKLYSNFVPVYGYGNVIVYEFR 259
12 -24.1003vu1_A mol:protein length:506 Putative uncharacterized protein PH0242  ali model follow..  18  9..EVTGWEQALKWLRSNTSK----------YATATSWWDYGYWIELLGNRRASADGGHARDRDILALFLARDGNISEVDFESWELNYFIIY-------LNDWAKFNAISYLGGAITRKEYNGDAYYKVATSNFVKLAFGIPKLFSNFIPVYQYGSVIVYEFR 251
13 -24.1002zag_A mol:protein length:497 Oligosaccharyl transferase stt3 subunit related protein  ali model follow..  19  17..ETSGWEDALKWLRENTPE----------YSTATSWWDYGYWISLLGQRRASADGGHARDRDILALFLARDGNISEVDFESWELNYFLVY-------LNDWAKFNAISYLGGAITRREYNGDESYKVATANFIKLAFFSDKLFSNFEPVYESGNVIVYRFT 255
14 -9.5805aza_A mol:protein length:872 Maltose-binding periplasmic protein,Oligosaccharyl transferase stt3 subunit related protein  ali model follow..  19  385.KAAAAWEDALKWLRENTPE----------YSTATSWWDYGYWIESLGQRRASADGGHRDRDHILALFLARDGNISEVDFESWELNYFLVYL-------NDWAKFNAISYLGGAITRREYNGDESGRGAVTTLLPLPRYGEKYVNLYAKVIVDVSNSSVKVT 531
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.