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Query: 3w20_A mol:protein length:273 Putative uncharacterized protein, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQHTYPAQLMRFGTAARAEHMTIAAAIHALDADEADAIVMDIVPDGERDAWWDDEGFSSSPFTKNAHHAGIVATSVTLGQLQREQGDKLVSKAAEYFGIACRVNDGLRTTRFVRLFSDALDAKPLTIGHDYEVEFLLATRRVYEPFEAPFNFAPHCDDVSYGRDTVNWPLKRSFPRQLGGFLTIQGADNDAGMVMWDNRPESRAALDEMHAEYRETGAIAALERAAKIMLKPQPGQLTLFQSKNLHAIERCTSTRRTMGLFLIHTEDGWRMFDLast
1 -112.0003w20_A mol:protein length:273 Putative uncharacterized protein  ali model  100  1MQHTYPAQLMRFGTAARAEHMTIAAAIHALDADEADAIVMDIVPDGERDAWWDDEGFSSSPFTKNAHHAGIVATSVTLGQLQREQGDKLVSKAAEYFGIACRVNDGLRTTRFVRLFSDALDAKPLTIGHDYEVEFLLATRRVYEPFEAPFNFAPHCDDVSYGRDTVNWPLKRSFPRQLGGFLTIQGADNDAGMVMWDNRPESRAALDEMHAEYRETGAIAALERAAKIMLKPQPGQLTLFQSKNLHAIERCTSTRRTMGLFLIHTEDGWRMFD 273
2 -63.6005iqs_A mol:protein length:315 WelO5  ali model follow..  14  1MKSDYDIPTTE--NATEVKKYPTAIQDIIINRSFDGMIIRGVFPRDTMEQVARCLEEGNDG-GMKSILNKNEEFGTKVAQIYGHAIVGQSPDLKDYFASSAIFRQACRTMFQVESIFHSLSGLPVEIPTGEGQTYTPATIRLLLEGR---EIAVHVGNDFLLMPAANHLTLLDLSDQLSYFIPLTVPEAGGELVVYSLEWNPQEASAQMQEYMDDVEFKIKSNQSQSVAYAPGPGDMLLFNGRYYHRVSEVIGNRRTIGGFLAFSKQRDKIY. 305
3 -35.7004iw3_A mol:protein length:229 Putative uncharacterized protein  ali model follow..  13  1MGSSSSGLVPRGSHMASHISPEHPMLAAVVDDTHGWSQQAHFLPADLVRALAAECRRRDAEGELNPAGVGRGATQEVRETIRGDQIQWIDP------GQAEACDQYLAAMDQLRLAINQGLFLGLEDFECHFALYPPGAF-----------YRRHLDRFRDDD-----------RRMVSAVLYLNQPHDGGQLRMFL-------------------------ADGVEHDVEPVAGCLVVFLSEVPHEVLPAGRERLSLTGWFRRRGND..... 221
4 -33.6005v1b_A mol:protein length:240 Egl nine homolog 2  ali model follow..  8  9...............SAPERLALDYIVPCMR-YYGICVVDSFLGAALGGRVLAEVEALKRGGRLRDGQLVSQR---------AIPPRSIRGDQIAWVEGHEPGCRSIGALMAHVDAVIRHCAGRLGSYKINGR----TKAMVACYPGNGLGYVRHVD------------NPHGDGRCITCIYYLNDVKVHGGLLQIFPEGRP-----------------------VVANIEPLFDRLLIFWSDNPHEVKPAYATRYAITVWYFDADERARAKD 222
5 -33.6002g19_A mol:protein length:244 Egl nine homolog 1  ali model follow..  9  1MPNGQTKPL-------PALKLALEYIVPCMN-KHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQK---------SDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIRHCNGKLGSYKINGRTKAMVACY----PGNGTGYVRHVD------------NPNGDGRCVTCIYYLNDAKVSGGILRIFPEGKA-----------------------QFADIEPKFDRLLFFWSDNPHEVQPAYATRYAITVWY........... 211
6 -33.1004kbz_A mol:protein length:238 Egl nine homolog 1  ali model follow..  9  7...............LPALKLALEYIVPCMN-KHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDG---------QLVSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIRHCNGKLGSYKINGRTKAMVACY----PGNGTGYVRHVD------------NPNGDGRCVTCIYYLNDAKVSGGILRIFPE-----------------------GKAQFADIEPKFDRLLFFWSDNPHEVQPAYATRYAITVWYFDADERA.... 216
7 -32.9002hbt_A mol:protein length:247 Egl nine homolog 1  ali model follow..  9  2..............ALPALKLALEYIVPCMN-KHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDG---------QLVSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIRHCNGKLGSYKINGRTKAMVACY----PGNGTGYVRHVD------------NPNGDGRCVTCIYYLNDAKVSGGILRIFPEGKA-----------------------QFADIEPKFDRLLFFWSDNPHEVQPAYATRYAITVWYFDADERA.... 212
8 -32.9006ey1_A mol:protein length:257 HIF prolyl hydroxylase  ali model follow..  8  24.CDKTGLALEKTWQLQKNERLSNMVVNQL--NTNGFCIINNFLGSSCSTEVLQQVLNLYQSGVFSNGQLARNVSVNRIRGDK-GGDERGCEAIKYLSSCVDSLISRCNGRLGNYMITGR------------------TKCMVACYPGSGLGYIRHID------------NPNRDGRCVTVLYYLNNSQDCGGQLWLYPNNEN-----------------------KVVKIDPIFDRLLLFWSRNPHEVKPAYAMRYAITLWYFDEKERAL... 245
9 -32.3002y33_A mol:protein length:252 EGL NINE HOMOLOG 1  ali model follow..  9  14...............LPALKLALEYIVPCMN-KHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDG---------QLVSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIRHCNGKLGSYKINGRTKAMVACYP----GNGTGYVRHVDNPNGD------------GRCVTCIYYLNDAKVSGGILRIFPEGKA-----------------------QFADIEPKFDRLLFFWSDNPHEVQPAYATRYAITVWY........... 216
10 -32.1005l9v_A mol:protein length:252 Egl nine homolog 1  ali model follow..  9  14...............LPALKLALEYIVPAMN-KHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQK-----SDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLICHCNGKLGSYKINGR--------TKAMVACYPGNGTGYVRHVD------------NCNGDGRCVTCIYYLNDAKVSGGILRIFPEGKA-----------------------QFADIEPKFDRLLFFWSDNPHEVQPAYATRYAITVWYFDADERA.... 223
11 -31.8005lbc_A mol:protein length:252 Egl nine homolog 1  ali model follow..  10  14...............LPALKLALEYIVPCMN-KHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDG---------QLVSQKSDSSKDIRGDKITWIEGKEPGCETIGLL------MSSMDDLVLHCNGKLGSYKVNGKAMVACYPGNGTGYVRHVD------------NPNGDGRCVTCIYYLNDAKVSGGILRIFPE-----------------------GKAQFADIEPKFDRLLFFWSDNPHEVQPAYATRYAITVWY........... 216
12 -29.8002rg4_A mol:protein length:216 Uncharacterized protein  ali model follow..  9  1....................MSLAQIKSLFATRLYHAPLSEHGPALDPAEFAASCYSIAEDDDAGQEWCEREGYPGYTSYASLTDLPWRFPIFADLVKSLDAHVAAF--------------------------------AEDLEFELDGKALRLEDIWINILPEGGVHGSHIHPHSVISGTTYVAMPEGTSALKLEDPRLPFMMAAPTRRKGARE-------ELRTFRSVAPKVGDVLLWESWLRHEVPMAEEDRISVSFNYAWGEG...... 210
13 -29.5003dkq_A mol:protein length:243 PKHD-type hydroxylase Sbal_3634  ali model follow..  13  1....................MGSDKIENLY--QGMLIEIPNVFSKQEVSHLREQLDARRWI----------GNQTSGAMATTRKRNQQLDKDDPVAVALGQQIMDRLLAHPQFVSAALPLQFYPPLFNRYQGGET----------------FGYHIDNAIRSTPD------GMIRTDLSATLFLSEPEQGGELVIQD--------------------------TYGQQSIKLSAGSLVLYPSSSLHQVTPVSGERTAAFMWL........... 187
14 -28.5003bvc_A mol:protein length:212 Uncharacterized protein Ism_01780  ali model follow..  9  2.........................SLSLFVTRLYHAPLSDHGPAIDAEEMESSCYAIAEDDEAGQGWCEENGYPGYTSYASLTDLPWRFPIFADLVKSLDAHVAAF--------------------------------AEDLEFDLDGRALELEDLWINILPEGGSHASHIHPHSVISGTTYVSMPGGTSALKLEDPRHAMMMAAPARRKTARD-------ELRQFIYVTPAVGDVLLWESWLRHEVPMSEDDRISVSFNYRWAEG...... 206
15 -26.3003mgu_A mol:protein length:644 PKHD-type hydroxylase TPA1  ali model follow..  8  1MKRKTAEVKGEKERNSKQISLEEDKIKGMFNPKIWDGTIHELVNDDLLRAVRKEIETEIHFTKKETDIYRVNQSGLANLSGLDWDDLSRLPNLFKLRQYSKQYRDFFGYVTKAGKLSGSKTDMSINTYTKGC-------------------LLTHDDVIGSRR-----------ISFILYLPDPDKSHYGGGLRLFPSILPNVPHSDP------------------SAKLVPQFNQIAFFPGFSFHDVEEVDKHRLSIQGWYHIPQVGE.... 252
16 -25.8006ax6_A mol:protein length:235 Procollagen lysyl hydroxylase and glycosyltransferase  ali model follow..  10  27.KEEWEKKYLHPEFLSHLQNFKDFDYTEICND----VYSFPLFTPAFCKEVIEVMDKANLWSKGGDSYFDPRIGGVESYPTQDTQLYEVGLDKQWHYVVFNYVAPFVRHLYNNYKTKDINLAFVVKYDMERQSEL-----------------APHHDSSTY--------------TLNIALNEYGKEYTAGGCEFIRHK---------------------------FIWQGQKVGYATIHAGKLYHRALPISGKRYILVSFV........... 228
17 -24.6004nhk_A mol:protein length:647 PKHD-type hydroxylase TPA1  ali model follow..  8  1MSSGVDLGTEN---LYFQSMLEEDKIKGMFNPKIWDGTIHELVNDDLLRAVRKEIETEIHFTKKETDIYRVNQSGLANLSGLDWDDLSRLPNLFKLRQYSKQYRDFFGYVTKAGKLSGSKTDMSINTYTKGC-------------------LLTHDDVIGSRR-----------ISFILYLPDPDKSHYGGGLRLFPSILPNVPHSDPSA------------------KLVPQFNQIAFFPGFSFHDVEEVDKHRLSIQGWY........... 242
18 -24.2003kt1_A mol:protein length:633 PKHD-type hydroxylase TPA1  ali model follow..  10  6..........KIKGMFNPKIWDKTFQDGLKKQPYNWGTIHELVNDDLLRAVRKEIETEIHFTKKETDIYRVNQSG--------ANLSGLDWDDLSRLPNLFKLRQILYSKQYRDFFGYVTKAGKLSGSKTD------MSINTYTKGC----LLTHDDVIGSRR------------SFILYLPDPDKSHYGGGLRLFPSILPNVPHSDP------------------SAKLVPQFNQIAFFPGFSFHDVEEVDKHRLSIQGWY........... 226
19 -23.0004lt5_A mol:protein length:327 Naegleria Tet-like dioxygenase  ali model follow..  10  71.KTTFQQSFTNANITLKDEKWLKNVRTAYFDGSVELAYLPNVLPKELVEEFTEKFESIQTGRKKDTGYSGILDNSMPFNYVTADLSQELGQYLSEIVNPQ---------NYYISKLLTCVSSRTINYLVSLNDSYYALNNCLYPSTAFNSIRKPHKDNLDIT---------------PSSLFYFGNFQTEGYLELTDKN----------------------------CKVFVQPGDVLFFKGNEYHVVANTSGWRIGLVYFA........... 296
20 -22.5003nnf_A mol:protein length:344 CurA  ali model follow..  7  1MSSDLGTENLYFQSNAMNREQVEQLKQEYEEKGY--CQIKKIFDFSAIKTIQKTLDQAKQESQISKEKVTLKLGGID--DIDTNDHAYDLVKYDFVSSFIQEKLALLNYIT--------------------GKNLMIMHNALFSVEPNHKGLPWHVGVGSFSFTKTE-------DFGASIWIPLDTKEHRGGMQY-QGDLNEYVANANTIYNKITEDVIDYTIKDGYEEDEYNLGDAFFFNKYVLHQSVPLHKLRRAFV--IRLVDYDTRV.. 273
21 -21.1002jij_A mol:protein length:233 PROLYL-4 HYDROXYLASE  ali model follow..  11  16..........................VVHLSWSPRAFLLKNFLSDEECDYIVE------------KARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGED---------------SVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYF---HDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGWSECAKRG-------------LAVKPIKGDALMFDPASLHGSCPTKGDKWSATKWI........... 218
22 -21.0004nhx_A mol:protein length:562 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 1  ali model follow..  7  45TEETLKKQVAEAWSRRTPFSHEVIVMDM---DPFLHCVIPNFIQSQDFLEGLQK-------------------------ELMNLDFHEKYNDLYKFQQSDDLKKRREPHISTLRKILFE--DFRSWLSDISKIDLESTIDMSCAKYEFTDALLCHDDELE--------------GRRIAFILYLVDRSMGGTLDLYSIDEHFQP-------------------KQIVKSLIPSWNKLVFFSPVSFHEVLSEEKSRLSISGWF........... 251
23 -20.9004xab_A mol:protein length:252 EvdO2  ali model follow..  7  1...........MDAMEVVGTIDHRDREEF--RSRGFAILPQVASESEVAWLRQAYDRL------------FVRRATPGAEDFYDIAGQRDREGPPLLPQIIKPEKYVPELLDS-PHFARCRSIASAFLDMAEEELEFYGHAILKPPRYGAPTPWHQDEAYMDPRWRR--------RGLSIWTTLDEATESGCLHY-GHRGPVLPHHHIDNDDRIRGLMTDDVDPTSAVACPLAPGGAVVHDFRTPHYAGPNLTDQPRRAYVLVFMSAPAEVAD 242
24 -20.9004xcb_A mol:protein length:261 oxidase/hydroxylase  ali model follow..  8  1..............LHMVPALTREQLYIF--DTTGFLVIPGVFGSGEVESFRSELE-----------------------RLDTVDPGFPRTRRYPDLPAASPVFARLALDDRLLAPVRDVVNQPLRLLEGYGLRRTKDSVLYLHGGNSELLDLGDRQVGRDLSITHTYHDGKLYCPYVKALVYLSDSPEDGSFCYVQGSHKANFPLLRERAERGENTSLVDSGFPTLSDVFVRSGDVLLLNEALMHGTRRKLTEGDRLLTAFGYGPTFFTEWR 236
25 -20.9004nao_A mol:protein length:326 Putative oxygenase  ali model follow..  9  1MRGSGSMTSQHQEHTGTKRFSIQSDPVEIHRVEDGVAIIEGFLTPEQVQKLNKDVDAPLKA--DREQLKFKADKKDDPHFWLADFIPDHVARVHNLVDFSHCFRHEILNHELLHKICRLTFE--------ESGDYWLGYGAVIENGPGTTEQKWHRDQPRYPLVKEG---PDAPEGMLNFFTALTDDAETGKTQYIL-------------GSNKRVELGEPDADHPIEYVGLKPGDTTIVSGKITHRDNRSDKMRRAMPIMI........... 241
26 -20.4005c5t_A mol:protein length:228 Prolyl 4-hydroxylase  ali model follow..  8  23..........................RPGVCDGKYYEKIDGFLSDIECDVLIN-AAIKKGLIKSEVGGATENDPIKLDPKSRNSEQTWFMPGEHEVIDKIQKKTREFLNSKKHCIDKYNFEDVQVARYKPGQY------------------YYHHYDGDDCDDACPK-------QRLATLMVYLKAPEEGGG---------------------------ETDFPTLKTKIKPKKGTSIFFYKETLHAGLPVSGEKIIANQWIRAVK....... 222
27 -20.3002opw_A mol:protein length:291 PHYHD1 protein  ali model follow..  11  1.................MACLSPSQLQKF--QQDGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQLRAQGSTDYFLSSGDKI-VFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHSFKVQTLARSLKQPHFGGEVSPHQDASFLY--------TEPLGRVLGVWIAVEDATENGCLWF-GVSRRMVRAPVGSAPGTSFLGSEPARDNSLFVPTPVQRGALVLIHGEVVHKSKQNLSDRSRQAYTFHLMEASGTTWS 273
28 -20.3005zm2_A mol:protein length:306 Dioxygenase andA  ali model follow..  13  1MGSSSSGLVPRGSHMPPIRRVNASQGSDAAYQILQCVIVEQVICPNIIAKISDDVNRVMDKATIGAKKGE---------QTHIINMHNRTIHMGDLVLTSKTYRDELLNLPFAHEVLEKVFKKDSG-------DYWLNMGNILNMLPGAEAQRPHRDDYLYPVSQHM-DPATSPDLMINITFPLNERHDNGGTLLLP-------------KSHTGPNADFYANAEDLPAAEMQVGDALIFTGKCVHGANRSDKPRIGLALAA........... 238
29 -20.1004y5s_A mol:protein length:315 Verruculogen synthase  ali model follow..  10  4FTVDSKPQLQRLAADADVDRMCRL-------EEDGAFILKGLLPFDVVESFNRELDVQ------------MAIPPPKGERLLADKYPPHFKYVPNVATTCPTFRNTVLINPVIHAICEAYFQ--------RTGDYWLSAAFLREIESGMPAQPFHRDDATHPLMHYQPLEAPPV--SLSVIFPLTETEENGATEV--------------ILGSHRWTEVGTPERDQAVLATMDPGDVLIVRQRVVHARTTAGKPRRVVLAYF........... 228
30 -19.7005ybm_A mol:protein length:314 PrhA  ali model follow..  9  3.SSSSGLVPRGSHMPPRLQRFPATASADEIFAAFQCVVIEGFISPEQVARFSQEVDPAMEKIPVEVT--------------NNGNSNDRTKRFSKCVIASPTFRNEIIESDLMHELCDRVFSKPGE-----GMGYHFNDNMVIEVQPGAPAQRLHRDQELYPWWNSM--GPAGPECVINFFCAVTPTEENGATRL-------PGSHLWPEFTQINERDCPQFGKIETVPAIMQPGDCYLMSGKVIHG-ATTTDRRRALALAI........... 243
31 -19.6005ybl_A mol:protein length:314 Multifunctional dioxygenase ausE  ali model follow..  11  12.GSHMPSRLQKFPATAPADEIYAA-------KEDGCVIIEGFVPPDQMARFSQEIQPAMEKIQVQVT--------------NDGNSNDRVKRFSKLVTTSPTFRHEILENDLMHELLQRVFSKPGEGMG-----YHFNDTMVIEVQPGAPAQRLHRDQELYPWWNSMGP--DAPECLVNFFCAVTPTVENGATRL-------PGSNRWPELTLINATDCPQYGKIDSVPAIMQPGDCYMMSGKVIHG-ATLSDQRRALAFST........... 243
32 -19.6004xaa_A mol:protein length:223 Putative oxygenase  ali model follow..  7  1..............MTTATLDRAAAIERF--RRDGFANAGPVLAPDAIARLKAGAER-------------ITRFTDEGLRSDDYWNFPVEGDERPVLYRVHNLEKQDWAPERDLLHREELAQLAAAFVDGPVVPTAYALV--LKEPYRAAEVPWHRDRVNVGP-----------RTVCNLSICLDDAGHNGCLEAVP-----------SHLLPDDAEVAKVRATGPVVPVPVSQGDVVVHDVRLVHGSGPNANGSWRRTIVIEYADPA..... 218
33 -19.4002rdn_A mol:protein length:288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II)/alpha-ketoglutarate dependent hydroxylase  ali model follow..  8  1.GSHMTNVTGDYTDCTPLLGDRAALDSFYEEHGY--LFLRNVLDRDLVKTVAEQMREGLVALGAADPHATLEELTIDSFESVDEVAMHDYVKYDAFWNNPS-----------TIKVFEQVFGEPVFVFLSTTIRYYPSQAGSEEPSFHY-LTPFHQDGFYIGPN----------QDFRTFWIPLRTTRESGGVALADRDHVLNESFRRFGHPVRGIPPTEVSEDEHLLHSPMEPGDILLFHAHMCHKSIPNLSKLMRMSMDTRVQPAKSHR.. 257
34 -19.4005ep9_A mol:protein length:305 SnoN,Epimerase SnoN  ali model follow..  9  5ADQETEPGVPADLPAESDPAALERLAARY--RRDGYVHVPGVLDAGEVAEYLAEARR-------------------LLAHEESVRWGSGAGTVMDYVADAQLGSDTMRRLATHPRIAALAEYLAGSPLRLFKLEV---LLKENKEKDASVPTAPHHDAFAFPFSTAG--------TALTAWVALVDPVERGCMTFVPGS-HLLPDPDTGDEPWAGAFTRPGEIWMPRVTVPLRAGDCTFHHARTVHSAGANSTDEPRLSTSAVYMDAT..... 240
35 -19.4005m0t_A mol:protein length:294 Alpha-ketoglutarate-dependent non-heme iron oxygenase EasH  ali model follow..  12  4ITETSKPTLRRIPRSAGDEAIFQV-------QEDGVVVIEGFMSADQVRRFNGEIDPHMKQWELGQKS-------------YQESYLAGMRQLSSLPLFSKLFRDELMNDELLHGLCKRLFGPESG-------DYWLTTSSVLETEPGYHGQELHREHDGIPICTTLGRQSPES--MLNFLTALTDTAENGATRVLP-------------SHLWEDFSAPPPKADTAIPAVMNPGDAVLFTGKTLHG-NTTDFLRRGFPLIM........... 229
36 -19.3004xbz_A mol:protein length:334 EvdO1  ali model follow..  13  31.............CDIRRTGLLPEHVTAF--RRQGVLVVRGLLTPQELADVQEAGRAL-------DRAWSTRSMEDTVWTLEPDQPGAAPVRIEYVVDKARPIAMLAGHPLLLRIMEQLVGPNLIPTWDS-----------VFKTPAGAPRLAWHRDAGLY----DNAVGVTGAGRVIDAGIYLDPAPEDNCVWC----PESNYWGDDRLTATADQLNASEWDTTGAVPAVMQPGDLLLHNILTLHGAPAVGKQRRVI--YFEYRPAE..... 259
37 -19.2005y7t_B mol:protein length:315 Iron/alpha-ketoglutarate-dependent dioxygenase asqJ  ali model follow..  7  1MMTSKDHVKSQIPRLSAINDL--HKIWPTVEEH-GAAIIESFLSLDIVRRLNEEVDP---------FVKIEPIPAAKTKDHPNHVLSTTTRLVNVLAPISKAYREDVLNSKVLHRICSDAFH--------VYGDYWVLMGAVMELAPSNPAQPLHRDMRFSHPIVEYLKPDAP-ATSINFLVALSPTAENGATHV--------------ILGSHKWQNLSNVSMDATVRALMNPGDALLITDSTIHC-TTGTETRRLLTITM........... 231
38 -19.2003emr_A mol:protein length:310 EctD  ali model follow..  9  1MEDLYPSRQNNQPKILKRKDITKEQLDSY--EKNGFLQIKNFFSEDEVIDMQKAIFELQDSIKDVASD---------------KVIREPESNDIRSIFHVHQDDNYFQDVANDKRILDIVRHL------LGSDVYVHQSRINYKPGFKGKEFDWHSDFETWHVEDG-----MPRMRAISVSIALSDNYFNGPLML-DNNYKESLKKQKLGVPDEESLRELTRIGGGISVPTGKAGSVTLFESNTMHGSTSNITPYPRNNLFMVYNSVKNRLVE 275
39 -18.6004mhr_A mol:protein length:314 Ectoine hydroxylase  ali model follow..  10  3MQDLYPSRQRADAEMRPRLDISARQAAAF--DRDGYIVLEDIFSADEVAFLQKAAGNLLADPAALDAD---------------TIVTEPQSNEIRSIFEIHAQSPVMARLAADARLADVARFL------LGDEVYIHQSRLNYKPGFKGREFYWHSDFETWHVEDG-----MPRMRALSMSVLLAENTHNGPLMV-PDDHYLSSLKKQEYGVPDEESLAELAHRHGIVAPTGKPGTVILFDCNLMHGSNGNITPFPRANAFLVYNAVSNR... 271
40 -18.5005iax_A mol:protein length:226 Procollagen-Proline Dioxygenase  ali model follow..  8  33..........................IISKFEEPLIVVLGNVLSDEECDELIE-----------------LSKSKLARSKVGSSRDVNDIRTSSGAFLDDNELTAKIEKRISSIMNVPASHGEGLHILNYE-----------------DQQYKAHYDYFAEHSRSAA-------NRISTLVMYLNDVEEGGETFF----------------------------PKLNLSVHPRKGMAVYFNELTLHGGAPVKGEKWIATQWV........... 211
41 -18.3002a1x_A mol:protein length:308 Phytanoyl-CoA dioxygenase  ali model follow..  8  13..........QFQYTLDNNVLTLEQRKFY--EENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSE---YAPSEKMITKVQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTM-----------INKPPDSGKKTSRHPLH-----QDLHYFPFRPSDLIVCAWTAMEHISNNGCLVVLP---PHDYPKWEGGVNKMFHGIQDYEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYID 261
42 -18.1005nch_A mol:protein length:268 Leucine hydroxylase  ali model follow..  7  5...................QLTADQVEKY--KSDGYVLLEGAFSPEEVHVMRQALKKDQEVQGPHR-------------------ILEEDGRTVRALYASHTRQSVFDQLSRSDRLLGPATQL------LECDLYIHQFKINTKRAFGGDSWAWHQDFIVWRDTDG-----LPAPRAVNVGVFLSDTEFNGPVVFLRETSRSDQHVDPDDYSMTPAELSQMVEKHPMVSPKAASGSVMLFHPEIIHGSAPNISPFARDLLIITYNDVANA... 237
43 -18.0002fct_A mol:protein length:313 syringomycin biosynthesis enzyme 2  ali model follow..  10  3.............HMSKKFALTAEQRASF--EKNGFIGPFDAYSPEEMKETWKRTRLRLLDRSAAAY----------------QDLDAISGGTNIANYDRHLDDDFLASHICRPEICD-------RVESILGPNVLCWRTEFFPKYPGDEGTDWHQADTFAGKPQIIWPENEEFGGTITVWTAFTDANANGCLQFIPGTQNSMNYDETKRMTYEPDANNSVPDEASAVPMQMKAGQFIIFWSTLMHASGESQEMRMGFA--SRYVPSFVHVYP 267
44 -17.6005epa_A mol:protein length:279 SnoK  ali model follow..  10  1MARSADPDPGG---PTTAENLSKEAVRFY--REQGYVHIPRVLSETEVTAFRAACEE------------------VLEKEGREIWGAGEDEVQVHYVAQAWQKHPELRSL----VLHPEISGIALRLAGAPLRVYSSDIL--VKEPKRTLPTLVHDDETGLP--------LNELSATLTAWIALTDPVERGCMSYVP-REDRQEHMTSFAEFRDLADVWPDYPWQPRVAVPVRAGDVVFHHCRTVHMAEANTSDSVRMAHGVVYMDAD..... 237
45 -17.5003gja_A mol:protein length:319 CytC3  ali model follow..  8  1.........MTTVSEQANFTFSPEEVARF--ERDGYIGPVKIFEPEEMTRRWNIIRRQ-------------------LLDRSLAIYPDSNGKANISNYDRHLDIDLLAEHIMRPEIVD-------RVGSLIGRNLLCWRSEFFPKYQGDEGTDWHQAATFAHATGKPQEGRPAFIGTITVWTAFTHTEQNGCLQL-REKDGIKRGFFGYDYRSLQKDPDWKPDESQAYPMVLKPGEAVIFWSNTMHASLPHTGSRMGFA--ARYVPTQVQVYP 269
46 -15.5004nj4_A mol:protein length:250 RNA demethylase ALKBH5  ali model follow..  11  10.ENLYFQSMPERSDYEEQQLQKEEEARKV-----SGIRQMRLFSQDECAKIEARIDEVVSRAEKGLYNEHTVDRAPLRNKYFFGEGYTYGAQLQKRGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFVNSAVINDYQPGGC---IVSHVD------------PIHIFERPIVSVSFFSDS----ALCFGCKFQFKPIR-----------------VSEPVLSLPVRRGSVTVLSGYATHCIRPIKERRAVII-LRKTRLDAPRL.. 244
47 -15.2004npl_A mol:protein length:250 RNA demethylase ALKBH5  ali model follow..  11  2..................ESEYEERRDAEARRVKSGIKQASIFTLEECARIEAKIDEVVAKADKGLYREHTVDRAPLRNKYFFGEGYTYGAQLEKRGPGQERLYSKGEVDDIPDWVHELVIDRLVTHGVIPEGFVNSAVINDYQPGGC---IVSHVD------------PIHIFERPIVSVSFFSD-----ALCFGCKFLFKPIR-----------------VSEPVLHLPVRRGSVTVLSGYATHCIRPIKERRAVIIL............. 213
48 -15.0002dbi_A mol:protein length:461 Hypothetical protein ybiU  ali model follow..  10  93LKAQGDAVWPVLSYADIKAGHVTAEQREQIKRR-GCAVIKGHFPREQALGWDQSMLDYLDRNRFDEVYKGPGDNFFGTLSASRPEIYPIYWSQAQM-EEMANAQSFLNRLWTFESDGKQWFNPDVSVIYPDR-------IRRRPPGTTSKGLGAHTDSGALERYTVDNTTKCSVFRTFQGWTALSDLPGQGLLHVVDVPEDELCGVAPGRVLPVSEQWHPLLIEALTSIPKLEAGDSVWWHCDVIHSVAPVEQQGWGNVMYIPAAP....... 406
49 -14.8004rgk_A mol:protein length:418 Uncharacterized protein  ali model follow..  9  67...............IINGKVTEEQKAQI--KQRGCCAILGVFPQEKATAWNREIGD-----YLDRNNFVERLKNAAEDNYFGTLAASKPQIYGIYWSTPQVEARQDKRMQAVQIFLNNLWQTESNGKQHFDANTYADRTRRRPPKSSSLGLSPHVDG-RPEVREFPSPAVCSMFRTFQGWTALTPRTHAGTLNVIDVADDDLCGAAPGRALSASEQWHPLLMEAISPIPDLEAGDTVFWHCDVIHSVENEHGEFDSNVMYIAAAPWCEK... 367
50 -14.5002csg_A mol:protein length:424 putative cytoplasmic protein  ali model follow..  9  56LKAQGQPVWPIIPFSELAMGNISDATRAEVKRR-GCAVIKGHFPREQALAWDQSMLD--------DKNHFDEVYKGPGDNFFGTLSASRPEIYPVYWSQAQMQARQSEEMALAQSFLNRLWQVEHDGKRWFNPDIYPDRIRRRPPGTTSKGLGAHTDSTDVEEYTVDNTTKCSVFRTFQGWTALDMLPGQGLLHVVDVPEDELCGVAPGRVLPISEQWHPLLMAALTSIPPLEAGDSVWWHCDVIHSVAPVEQQGWGNVMYIPAAPMCEK... 373
51 -14.3002iuw_A mol:protein length:238 ALKYLATED REPAIR PROTEIN ALKB HOMOLOG 3  ali model follow..  8  1MGSSSSGLVPRGSHMRVIDREGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQKQRTGIREDITYQQPRLTAWYGELPYTYSRITMEPNPHWHPVLRTLKNRIEENT--------------------GHTFNSLLCNLYRNEKDSVDW--HSDD----------------EPSLGRCPIIASLSFGATRTF-------------EMRKKPPPEENGDYTYVERVKIPLDHGTLLIMEGATQHRVPKSREPRVNLTFRTVYPDPRGAPW. 232
52 -13.9006EC3 Entity 1(prereleased)  ali follow..  6  241.............IVVVGRARLGAQIRRF--REDGFVNAGPVFADDTIARLKAGAID------LISRFTEHGHVSDDYWNYDVENEAPVLYRIHNLEKQDWAERELLFRPELAELAAAFVGSPVVPTAFA-----------VLKEPKRAAGVPWHRDRANVAP-----------HTVCNLSICLDTAGENGCLEGVP-----------SHLLPDDIDVPEIRDGGPRVPVPSKVGDVIVHDVRLVHGSGPNPSDQWRRTIVIEFANPA..... 457
53 -13.5005lsq_A mol:protein length:359 Ethylene Forming Enzyme  ali model follow..  11  1MNHKVNLQTFELPTEVTGCAADISLGRALIQAKDGIFQIKT-EQDRKTQEAMAASKQFKSSCVSDLTYSGYVASGEEVTAGKPDFPETYQKSMKTFMEELGLAGERLLKLTALGFELPINTFTDLTRDGWHHMRVL-------QTSTLSRGIGAHTD--------------------YGLLVIAAQDDVGG-LYIRPPVEGEKRNRNWLPGESSAGMFE---HDEPWTFVTPTPGVWTVFPGDILHKVKLNTRERFACAYFHE.......... 288
54 -13.2003khb_A mol:protein length:219 Alpha-ketoglutarate-dependent dioxygenase alkB  ali model follow..  9  6...................DLFADAEPWQEPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQG----YLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAK---LSLHQDKDEPDLRAP----------IVSVSL--------GLPAIFQFGGLKRND--------------------PLKRLLLEHGDVVVWGGESYHGIQPLIDCRYNLTF............. 212
55 -13.0002fd8_A mol:protein length:211 Alkylated DNA repair protein alkB  ali model follow..  10  10....................................VILRRFAFNAAEQLIRDINDVASQSPFRQMVTPG----GYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAK---LSLHQDKDEPDLRAP----------IVSVSL--------GLPAIFQFGGLKRND--------------------PLKRLLLEHGDVVVWGGESYHGIQPLIDCRYNLT-FRQAGKKENLYFQ 211
56 -13.0004o61_A mol:protein length:222 RNA demethylase ALKBH5  ali model follow..  11  2.................QQLQKEEEARKVKSG----IRQMRLFSQDECAKIEARIDEVVSRAEKGLYNEHTVDRAPLRNKYFFGEGYTYGAQLQKRGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFVNSAVINDYQPGGC---IVSHVD------------PIHIFERPIVSVSFFSDS-----ALCFGCKFQFKPIRVSE----------------PVLSLPVRRGSVTVLSGYATHCIRPIKERRAVII-LRKTRLDAPRL.. 220
57 -12.5006AKZ Entity 1(prereleased)  ali follow..  10  53IAKIGPSYVPKCDFIDIKDNKLPQQVSELFKQR-GCLMIENVIDVDRIDIWFNELVE----------------CKTHPETAGYTFPNPTSWYNVFWSKPQTEARFHPNMKAIFKAMSKEFYVEDKENCLIDLDTQLVYGDRIIREPGKAAALPLHLDSSSIERDTGGKSTICSSFRTLQGWLALSNSGEGTLRVLFWKDPESGNIDDYEIDLITPKFFYPHLHQGIISIPDVKKGSFVFWHCDLPHEVDRENGNGHSSVLYYGQTPLSIT... 380
58 -12.4004nig_A mol:protein length:205 Alpha-ketoglutarate-dependent dioxygenase AlkB  ali model follow..  10  9....................................VILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQG----YLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAK---LCLHQDKIHPDLRAP----------IVSVSL--------GLPAIFQFGGLKRND--------------------PLKRLLLEHGDVVVWGGESYHGIQPLIDCRYNLTF............. 198
59 -12.4004mgt_A mol:protein length:205 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2  ali model follow..  14  4...........................RHIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSV------------PAKQATYGDAGLTYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICE--HRDD----------------ERELAPGSPIASVSFGASRDFVFRHKDSRGKSPS--------------RRVAVVRLPLAHGSLLMMNHPTYHSLPVVLAPRVNLTF............. 199
60 -12.4003rzm_A mol:protein length:206 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2  ali model follow..  14  4...........................RHIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSV------------PRKQATYGDAGLTYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICE--HRDD----------------ERELAPGSPIASVSFGASRDFVFRHKDSRGKSPS--------------RRVAVVRLPLAHGSLLMMNHPTYHSLPVVLAPRVNLTF............. 199
61 -12.2004mg2_A mol:protein length:205 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2  ali model follow..  14  4...........................RHIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVAGKWHSV------------PRKQATYGDAGLTYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICE--HRDD----------------ERELAPGSPIASVSFGASRDFVFRHKDSRGKSPS--------------RRVAVVRLPLAHGSLLMMNHPTYHSLPVVLAPRVNLTF............. 199
62 -12.1003h8o_A mol:protein length:209 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2  ali model follow..  14  6...........................RHIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSV------------PRKQATYGDAGLTYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHIGE--HRDD----------------CRELAPGSPIASVSFGASRDFVFRHKDSRGKSPS--------------RRVAVVRLPLAHGSLLMMNHPTYHSLPVVLAPRVNLTF............. 201
63 -12.0005xeg_A mol:protein length:231 Oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed  ali model follow..  7  2.....................EAAPLQYLRPG---MVLLKKFLKHDDQVDIIRRCQKLGIG-DGGKLSLQMMCLGKNWDPNSRSYGDTRPFDGAQPPSIPEVFSKIVKDAIQSNEFLRQKARPANDVEELPPLSPDICLVNFYTSSG---KLGLHQDKDETKPSLHKGLPVVSFSLGDTAEFLYGDVNDVD----------------------------------KASKVDLESGDVLIFGGKSFHGVSRIRPGRLNLT.............. 227
64 -12.0003rzg_A mol:protein length:209 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2  ali model follow..  14  6...........................RHIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSV------------PRKQATYGDAGLTYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICE--HRDD----------------ERDLAPGSPIASVSFGASRDFVFRHKDSRGKSPS--------------RRVAVVRLPLAHGSLLMMNHPTYHSLPVVLAPRVNLTF............. 201
65 -11.9005lun_A mol:protein length:352 2-oxoglutarate-dependent ethylene/succinate-forming enzyme  ali model follow..  10  2..TNTNLQTFELPTEVTGCAADISLGRALIQAKDGIFQIKT-EQDRKTQEAMAASKQFKSSCVSDLTYSGYVASGEEVTAGKPDFPETYQKSMKTFMEELGLAGERLLKLTALGFELPINTFTDLTRDGWHHMRVL-------QTSTLSRGIGAHTD--------------------YGLLVIAAQDDVGG-LYIRPPVEGEKRNRNWLPGESSAGMFE---HDEPWTFVTPTPGVWTVFPGDILHKVKLNTRERFACAYFHE.......... 287
66 -11.4006f4n_A mol:protein length:271 JmjC domain-containing protein 5  ali model follow..  7  25ADHGLIPDVKLEKTVPRLHRPSLQHFREQFLVPGRPVILKGVADH-SLEYIQEIAGCRTVPVEVGSRYTDEEWSQTLMTVNEFISKYIVNEPRDVGYLAQHQLFDQIPELKQDISIPDYCSLGDGEEEEITINAWF---------GPQGTISPLHQD------------PQQNFLVQVMG-IRLYSPQESGAL--YPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDLS-FSVSFWWS.......... 271
67 -11.2004qkb_A mol:protein length:200 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial  ali model follow..  10  3.................VRGSGPSVLSRLQDA---AVVRPGFLSTAEEETLSRELEPE------------LRRRRYEYDHWDAAIHGFRETEKSRWSEASMAIMRRVQA----------------AAFGPGQTLLSSVHVLDLEARGY---IKPHVDSIKF--------------GATIAGLSL-----LSPSVM-----------------------VHTQEPGEWLELLLEPGSLYILRGSASHEILRDEGRRISVI.............. 186
68 -11.1003uyj_A mol:protein length:248 Lysine-specific demethylase 8  ali model follow..  7  3.HMGLIPDVKLEKTVPRLHRPSLQHFREQFLVPGRPVILKGVADH----PCMQKWSLEYIQEIAGCRTVPVEVGSRYTDEEWSQTLMTVNEFISKYIVNEPRDVGYLAQHQLFDQIPELKQDISIPDYCSLGDGEEEEITINAWFGPQGTISPLHQD------------PQQNFLVQVMG-IRLYSPQESGAL--YPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDLS-FSVSFWWS.......... 248
69 -11.1001bk0_A mol:protein length:331 ISOPENICILLIN N SYNTHASE  ali model follow..  7  1MGSVSKANVIDVSPLFGDDQAAKMRVAQQIDADTGFFYAVN-INVQRLSQKTKEFKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFQDFAEQYYWDVFGLSSALLKGYALALGKEE---ASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHED--------------------VSLITVLYQSNVQN---------------------------LQVETAAGYQDIEADDTGYLIYKA-PIHRVKWVNAERQSLPFFVNLGYD...... 291
70 -11.0006f4s_A mol:protein length:255 JmjC domain-containing protein 5  ali model follow..  7  16.............TVPRLHRPSLQHFREQFLVPGRPVILKGVADH-SLEYIQEIAGARTVPVEVGSRYTDEEWSQTLMTVNEFISKYIVNEPRDVGYLAQHQLFDQIPELKQDISIPDYCSLGDGEEEEITICAWF---------GPQGTISPLHQD------------PQQNFLVQVMG-IRLYSPQESGAL--YPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDLS-FSVSFWWS.......... 249
71 -10.9006f4p_A mol:protein length:255 JmjC domain-containing protein 5  ali model follow..  7  16.............TVPRLHRPSLQHFREQFLVPGRPVILKGVADH-SLEYIQEIAGARTVPVEVGSRYTDEEWSQTLMTVNEFISKYIVNEPRDVGYLAQHQLFDQIPELKQDISIPDYASLGDGEEEEITINAWF---------GPQGTISPLHQD------------PQQNFLVQVMG-IRLYSPQESGAL--YPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSAILSPGEILFIPVKYWHYVRALDLS-FSVSFWWS.......... 249
72 -10.8006f4o_A mol:protein length:255 JmjC domain-containing protein 5  ali model follow..  7  16.............TVPRLHRPSLQHFREQFLVPGRPVILKGVADH----PCMQKWSLEYIQEIAGCRTVPVEVGSRYTDEEWSQTLMTVNEFISKYIVNEPRDVGYLAQHQLFDQIPELKQDISIPDYCSLGDGEEEEITINAWFGPQGTISPLHQD------------PQQNFLVQVMG-IRLYSPQESGAL--YPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDLS-FSVSFWWS.......... 249
73 -10.7006fxk_A mol:protein length:718 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3  ali model follow..  10  507LWQIFDNPVDWKEQYIHENYSRALEGEGIVEQPCPDVYWFPLLSEQMCDELVAEMEHYG-------------QWSGGRHEDSRLAGGYENVPTVDIHMKQVGYEDQWLQL--LRTYVGPMTESLFPGYHTKARAVMNFVVRY--RPDEQPSLRPHHD-----------------SSTFTLNVALNHKGEGGGCRF---------------------------LRYDCVISSPRKGWALLHPGRLYHEGLPTWGTRYIMVSFV........... 713
74 -10.7004gaz_A mol:protein length:252 Lysine-specific demethylase 8  ali model follow..  7  11.............TVPRLHRPSLQHFREQFLVPGRPVILKGVADH----PCMQKWSLEYIQEIAGCRTVPVEVGSRYTDEEWSQTLMTVNEFISKYIVNEPRDVGYLAQHQLFDQIPELKQDISIPDYCSLGDGEEEEITINAWFGPQGTISPLHQD------------PQQNFLVQVMG-IRLYSPQESGAL--YPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDLS-FSVSFWWSLE........ 246
75 -10.5001e5r_A mol:protein length:290 PROLINE OXIDASE  ali model follow..  12  1......................................MRSHI-ELDQTRLAPDLAYLAAVPTVEEEYDEFSNGFWKHVPLWNASGDSEDRLYRDLKDAAAQPTAHVEHVPYLKEIVTTVFDG---------THLQMARSRNLKNAI----VIPHRDFVELDREV---------DRYFRTFMVLEDSPL-------------------------------AFHSNEDTVIHMRPGEIWFLDAATVHSANFSEISRQSL------------CVD 174
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.