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Query: 3waj_A mol:protein length:875 Transmembrane oligosaccharyl transferase, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQNAESWFKKYWHLSVLVIAALISVKLRILNPWNSVFTWTVRLGGNDPWYYYRLIENTIHNFPHRIWFDPFTYYPYGSYTHFGPFLVYLGSIAGIIFSATSGESLRAVLAFIPAIGGVLAILPVYLLTREVFDKRAAVIAAFLIAIVPGQFLQRSILGFNDHHIWEAFWQVSALGTFLLAYNRWKGHDLSHNLTARQMAYPVIAGITIGLYVLSWGAGFIIAPIILAFMFFAFVLAGFVNADRKNLSLVAVVTFAVSALIYLPFAFNYPGFSTIFYSPFQLLVLLGSAVIAAAFYQIEKWNDVGFFERVGLGRKGMPLAVIVLTALIMGLFFVISPDFARNLLSVVRVVQPKGGALTIAEVYPFFFTHNGEFTLTNAVLHFGALFFFGMAGILYSAYRFLKRRSFPEMALLIWAIAMFIALWGQNRFAYYFAAVSAVYSALALSVVFDKLHLYRALENAIGARNKLSYFRVAFALLIALAAIYPTYILADAQSSYAGGPNKQWYDALTWMRENTPDGEKYDEYYLQLYPTPQSNKEPFSYPFETYGVISWWDYGHWIEAVAHRMPIANPFQAGIGNKYNNVPGASSFFTAENESYAEFVAEKLNVKYVVSDIEMETGKYYAMAVWAEGDLPLAEKYYGGYFYYSPTGTFGYANSQWDIPLNSIIIPLRIPSELYYSTMEAKLHLFDGSGLSHYRMIYESDYPAEWKSYSSQVNLNNESQVLQTALYEAVMRARYGVSPTMGTQEVLYKYAYTQLYEKKMGIPVKIAPSGYVKIFERVKGAVVTGKVSANVTEVSVNATIKTNQNRTFEYWQTVEVKNGTYTVVLPYSHNSDYPVKPITPYHIKAGNVVKEITIYESQVQNGEIIQLDLELALVPRLast
1 -206.0003waj_A mol:protein length:875 Transmembrane oligosaccharyl transferase  ali model  100  1MQNAESWFKKYWHLSVLVIAALISVKLRILNPWNSVFTWTVRLGGNDPWYYYRLIENTIHNFPHRIWFDPFTYYPYGSYTHFGPFLVYLGSIAGIIFSATSGESLRAVLAFIPAIGGVLAILPVYLLTREVFDKRAAVIAAFLIAIVPGQFLQRSILGFNDHHIWEAFWQVSALGTFLLAYNRWKGHDLSHNLTARQMAYPVIAGITIGLYVLSWGAGFIIAPIILAFMFFAFVLAGFVNADRKNLSLVAVVTFAVSALIYLPFAFNYPGFSTIFYSPFQLLVLLGSAVIAAAFYQIEKWNDVGFFERVGLGRKGMPLAVIVLTALIMGLFFVISPDFARNLLSVVRVVQPKGGALTIAEVYPFFFTHNGEFTLTNAVLHFGALFFFGMAGILYSAYRFLKRRSFPEMALLIWAIAMFIALWGQNRFAYYFAAVSAVYSALALSVVFDKLHLYRALENAIGARNKLSYFRVAFALLIALAAIYPTYILADAQSSYAGGPNKQWYDALTWMRENTPDGEKYDEYYLQLYPTPQSNKEPFSYPFETYGVISWWDYGHWIEAVAHRMPIANPFQAGIGNKYNNVPGASSFFTAENESYAEFVAEKLNVKYVVSDIEMETGKYYAMAVWAEGDLPLAEKYYGGYFYYSPTGTFGYANSQWDIPLNSIIIPLRIPSELYYSTMEAKLHLFDGSGLSHYRMIYESDYPAEWKSYSSQVNLNNESQVLQTALYEAVMRARYGVSPTMGTQEVLYKYAYTQLYEKKMGIPVKIAPSGYVKIFERVKGAVVTGKVSANVTEVSVNATIKTNQNRTFEYWQTVEVKNGTYTVVLPYSHNSDYPVKPITPYHIKAGNVVKEITIYESQVQNGEIIQLDLELALVPR 875
2 -110.0006c26_A mol:protein length:718 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3  ali model follow..  15  6.SCVLSVFQTILKLVIFVAIFGAAISSRLFA----VIKFESIIHEFDPWFNYRATKYLVNNSKFLNWFDDRTWYPLGRVTGGTLYPGLMTTSAFIWHWLGLPIDIRNVCVLFAPLFSGVTAWATYEFTKEIKDASAGLLAAGFIAIVPG-YISRSVAGSYDNEAIAITLLMVTFMFWIKAQKTGSIM------------HATCAALFYFYMVSAWGGYVFITNLIPLHVFLLILMGRYSSKLY--SAYTTWYAIGTVASMQIPFVGFLPIRSNDHMAALGVFGLIQIVAFGDFVKGQISTAKFKVIMMVSLFLILVLGVVGLSALTYMGLIAPWTGRFYSLWDTNY-AKIHIPIIASVSEHQPV------------SWPAFFFDTHFLIWLFPAGVFLLFLDLKDEHVFVIAYSVLCSYFAGVMVRLMLTLTPVICVSAAVALSKIFDIYLDFKTSDRKYAIKPAALLAKLIVSGSFIFYLYLPSVVLPSQTPDGKLALIDDFREAYYWLRMNSD---------------------------EDSKVAAWWDYGYQIGGMADRTTLVDNNTWNNTHIA-----IVGKAMASPEEKSYEILKEHDVDYVLVIFGGLIGFGGDDI-----------NKFLWMIRISEGIWPEEIKERDFYTAEGEYRVDARASETMRNSLLYKMSYKDFPQLFNGGQATDRVRQQ-----------------------------------MITPLDVPPLDYFDEVFTSEN---------WMVRIYQLKKDDAQGRTLRDVGE-LTRSSTKTRRSIKR---------PELGLRV..................................................... 718
3 -107.0006ftg_5 mol:protein length:705 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A  ali model follow..  15  7LRLSYEKQDTLLKLLILSMAAVLSFSTRLFA----VLRFESVIHEFDPYFNYRTTRFLAEEGKFHNWFDDRAWYPLGRIIGGTLLMITSAAIYHVLHFFHITIDIRNVCVFLAPLFSSFTTIVTYHLTKELKDAGAGLLAAAMIAVVPG-YISRSVAGSYDNEGIAIFCMLLTYYMWIKAVKTGSIY------------WAAKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIY--VAYCTVYCLGTILSMQISFVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFRSVISLVGFVLLTVGALLMLTGKISPWTGRFYSLLDPSY-AKNNIPIIASVSEHQPT------------TWSSYYFDLQLLVFMFPVGLYYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGIGVSQVLSTYMKNLDISRPDKKSKKQQDSTYPIKNEVASGMILVMAFLSARGGDGSRIIFDDFREAYYWLRHNTP---------------------------EDAKVMSWWDYGYQITAMANRTILVDNNTWNNTHIS-----RVGQAMASTEEKAYEIMRELDVSYVLVIFGGLTGYSS----------DDINKFLWMVRIGGSTDTGKHIKEHDYYTPTGEFRVDREGSPVLLNCLMYKMCYYRFGQVYTEAKRPPGFDRVRNAEIGNKDF---------------------------------ELDVLEEAYTTEH---------WLVRIYKVKD................................................................................................. 696
4 -80.1003wai_A mol:protein length:739 Maltose-binding periplasmic protein, Transmembrane oligosaccharyl transferase  ali model follow..  81  279..........................................................................................................................................................................................................................................................................................................................................................................................................................LAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELARIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTNKQWYDALTWMRENTPDGEKYDEYYLQLYPTPQSNKEPFSYPFETYGVISWWDYGHWIEAVAHRMPIANPFQAGIGNKYNNVPGASSFFTAENESYAEFVAEKLNVKYVVSDIEMETGKYYAMAVWAEGDLPLAEKYYGGYFYYSPTGTFGYANSQWDIPLNSIIIPLRIPSELYYSTMEAKLHLFDGSGLSHYRMIYESDYPAEWKSYSSQVNLNNESQVLQTALYEAVMRARYGVSPTMGTQEVLYKYAYTQLYEKKMGIPVKIAPSGYVKIFERVKGAVVTGKVSANVTEVSVNATIKTNQNRTFEYWQTVEVKNGTYTVVLPYSHNSDYPVKPITPYHIKAGNVVKEITIYESQVQNGEIIQLDL....... 739
5 -62.8003rce_A mol:protein length:724 Oligosaccharide transferase to N-glycosylate proteins  ali model follow..  15  5.QNFTDNNSIKYTCILILIAFAFSVLCRLYWVAEFFFNDQLMITTNDGYAFAEGARDMIAGF-----------HQPNDLSYFGSSLSTLTYWLYSIL----PFSFESIILYMSTFFASLIVVPIILIAREYKLTTYGFIAALLGSIANS-YYNRTMSGYYDTDMLVLVLPMLILLTFIRLTIN------------KDIFTLLLSPIFIMIYLWWYPSSSLNFAMIGLFGLYTLVFHRKEKIFYLAIALMIIALSMLAWQYKLALIVLLFAIFAFKEEKINFYMIWALIFISI-----------------------SILHLSGGLDPVLYQLKFYVFKASDVQNLKDAAFMYFNVNETIMEVNTIDPEV--------FMQRISSSVLVFILSFIGFILLCKDHKS--MLLALPMLALGFMALRAGLRFTIYAVPVMALGFGYFLYAFFNFL---------EKKQIKLSLRNKNILLILIAFFSISPALMHIYYYKSSTVFTSYEASILNDLKNKAQ---------------------------REDYVVAWWDYGYPIRYYSDVKTLIDGGKHLGKDN------FSSFVLSKEQIPAANMARLSVEYTE........................................................................................................................................................................................................................................................................... 516
6 -60.8005ogl_A mol:protein length:713 Undecaprenyl-diphosphooligosaccharide--protein glycotransferase  ali model follow..  14  5.QNFTDNNSIKYTAILILIAFAFSVLARLYEFYEFFFNDQLMITTNDGYAFAEGARDMIAGF-----------HQPNDLSYFGSSLSTLTYWLYSIL----PFSFESIILYMSTFFASLIVVPIILIAREYKLTTYGFIAALLGSIANS-YYNRTMSGYYDTDMLVLVLPMLILLTFIRLTIN------------KDIFTLLLSPVFIMIYLWWYPSSYSLNFAMIGLFGLYTLVFHRKEKIFYLTIALMIIALSM----------------------LAWQYKLALIVLLFAIFAFKEEKINFYMIWALIFISILILHLSGGLDPVLYQLKFYVFKASDVQNLKDAAFMYFNVNETIMEVNTIDPEV--------FMQRISSSVLVFILSFIGFILLLKDHKS--MLLALPMLALGFMALRAGLRFTIYAVPVMALGFGYFLYAFFNFL---------EKKQIKLSLRNKNILLILIAFFSISPALMHIYYYKSSTVFTSYEASILNDLKNKAQ---------------------------REDYVVAWWDYGYPIRYYSDVKTLIDGGKHLGKDN------FSSFVLSKEQIPAANMARLSVEY............................................................................................................................................................................................................................................................................. 514
7 -31.7002lgz_A mol:protein length:273 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3  ali model follow..  12  1..................................................................................................................................................................................................................................................................................................................................................................................................................................................MGSSSSGLVPRGS------------------------HSTWVTRTAYSSPSVVLPSQTPDGKLALIDDFREAYYWLRMNSD---------------------------EDSKVAAWWDYGYQIGGMADRTTLVDNNTWNNTHIA-----IVGKANASPEEKSYEILKEHDVDYVLVIFGGLIGFGGDDIN----------------------------------------------KFLWNIRISEGIWPEEIKERDFYTAEGEYRVDARASETMRNSLLYKMSYKDFPQLFNGGQATDRVRQQMITPLDVPPLDYFDEVFTSEQLKKDDAQGRTLRDVGELTRSSTKTRRSIKRPE-LGLRV.............................................................................. 267
8 -30.2003wov_A mol:protein length:512 Oligosaccharyl transferase  ali model follow..  13  2....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VIARNAKALKVSEIETTGWEQVLKWLNENTS---------------------------KYATATSWWDYGYWISLLGHRRASADGGHARDRD------HILALFLARDGNVSEVDFESWELNYFIIYLN-DWAKFNAISYLGGAITRREYNGDETGRGQVTTILPLQGSGGIYVNPYAGISVRVVQSNTTSKVTVNVRGRAECSPIYTLLIPGNKKIPGNGRCSDGSPFPYVLYLAPNFGLITYYKVATNIPISKYSGFTEKLYSNFVPVYGY-----------GNVIVYEFRPFAIYRIEELINGT-WKAVNSLTPGKHEKLYISAFGRDRNATLYVYAIGNKTEKIKIKPIIVNVTLPKAEKYRLVLVQKGVLTGP-PKLNGEIANPIR 371
9 -30.1003vgp_A mol:protein length:164 Transmembrane oligosaccharyl transferase, putative  ali model follow..  30  2................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PDLTEDWKEALEWMRTSLEEQNYL-----------------NPYEKPEYSVMSWWDYGNWILYVSKKAVVANNFQAGAVD-------AAKFFTAKSEDEAIKIAKKRGVRYVVTADEITMK---------------------------DANNTKFPAIMRIAGYNVDLMTEGEILNFFNHTVLYRLHMENAENLTHFRLVKEF................................................................................................................................................................................ 153
10 -29.9003vu0_A mol:protein length:162 Putative uncharacterized protein  ali model follow..  30  2.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EMTMDWKEALNWMKENLEAQDYL-----------------KAYEKPDYAVLSWWDYGNWILYVAKKAVVCNNFQAGADD-------AAKFFTAQSEEEAMKIVEKRKVRYVVTVEELTVKPETNKTKF--------------------------IPIMQIAGYSPEYMKNKEIIDFFNKTMLYKLHVENATNLTHFRLLKNF................................................................................................................................................................................ 153
11 -28.9002zag_A mol:protein length:497 Oligosaccharyl transferase stt3 subunit related protein  ali model follow..  13  1..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GPLLAQSAKSMRTTEIETSGWEDALKWLRENTP---------------------------EYSTATSWWDYGYWISLLGQRRASADGGHARDRDH------ILALFLARDGNISEVDFESWELNYFLVYLND-WAKFNAISYLGGAITRREYNGDESGRGAVTTLLPLPRYGEKYVNLYAKVIVDVSNSSVKVTVGDRECDPLMVTFTPSGKTIKGTGTCSDGNAFPYVLHLTPTIGVLAYYKVATANFIKLVPASTIPGFSDKLFSNFEPVYES-----------GNVIVYRFTPFGIYKIEENINGT-WKQVYNLTPGKHELKLYISAFRDIENATLYIYAINNEKIIEKIAEISHMDYLNEYPIAVNVTLPNATSYRFVLVQKGPIGVLL 355
12 -26.8003vu1_A mol:protein length:506 Putative uncharacterized protein PH0242  ali model follow..  13  2...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ALKNTEIEVTGWEQALKWLRSNTS---------------------------KYATATSWWDYGYWIELLGNRRASADGGHARDRDH------ILALFLARDGNISEVDFESWELNYFIIYLN-DWAKFNAISYLGGAITRKEYNGDENGRGRVTTILLTQAAGNVYVNPYARINKTRRIAVNIGQLECSPILSVAFPGNIKIKGSGRCSDGSPFPYVVYLTPSLGVLAYYKVATSNFVKLAFGIPTSSYSEFAEKLFSNFIPVYQY-----------GSVIVYEFRPFAIYKIEDFINGTREVGKLSPGKHTLRLYISAFGRDIKNATLYVYALNGTKINHLEEYPIIVNVTLPTAQKYAQKGPVGVLTGP-VRVNGKITNPAY 365
13 -21.1005ezm_A mol:protein length:578 4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferases of PMT family  ali model follow..  13  22.QGAVGWSAATGWVVLFVAVALVVWFVSL---------DMRHLVGPDEGRYAEISREMFASGDWVT--LKYFEKP--------PFHMWVTVVGYELFGLG-----EWQARLAVALSGLLGIGVSMMAARRWFGARAAAFTGLALLAAPMWSVAAHFN-----DMTLAGVMSCVLAFMLMGQHPDASVA-------ARRGWMVACWAAMGVAILT-KGLVGIALPGLVLVVYTLVTRDWGLWRRLHLALGVVVMLVITVPWFYLVSVRNPEFPNFFFIHEHWQRYT------------------SNIHSRSGSVFYFLPLVIGGFL---------------------------------------------------------AGIFPKLWTAMRAPVEGTQARFRPALMAGIWAIAIFFFSISRSKLPGYIVPALGILAGVALDRLSPRSWGKQLIGMAINANHIPNSFYRAYAVWVAVAFVVMLLGIAVARLLLRRGVLPSVAVYAMGMYLGFTVALLGHETVGRPASGADIAPQIAQKLTPEMPLYGVQMLDHTLPFYLRHPLMM--VGQADELTFGATVEPQRVVP--DVDSFTKLWKNGQPAMAVMSPD...................................................................................................................................................................................................................................................................... 545
14 -16.2003aag_A mol:protein length:291 General glycosylation pathway protein  ali model follow..  14  2.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PLGSKAPTVFSQNEASLLNQLKNIAN---------------------------REDYVVTWWDYGYPVRYYSDVKTLVDGGKHLGKDN------FPSFALSKDEQAAANMARLSVEYTE........................................................................................................................................................................................................................................................................... 88
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.