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current user: public |
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Query: 3wxx_B mol:protein length:219 AopB, from PDB1018 |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . | |||||||
# | Score | Template | Links and tools | %id | First | GQGVVLPQPMPGIGQQMSPPKQQELDQLRKTAQLGTANAAKLLGSSTLLNKLAFASPEEFEIELSKMTSELEQTQKKLKLADLERIRAENLKKIDENQTKMKEASEAADKAKKSGLASKIFGWISAIASMVIGAILIATGVGAAVGAMMIVGGAVGVANMAIQQAAADGRISPETMKVLGPIMIAAEILVAIVSIAVTFGASAASTAMKAVKFATQAAD | Last |
1 | -104.000 | 3wxx_B mol:protein length:219 AopB | ali model | 100 | 1 | GQGVVLPQPMPGIGQQMSPPKQQELDQLRKTAQLGTANAAKLLGSSTLLNKLAFASPEEFEIELSKMTSELEQTQKKLKLADLERIRAENLKKIDENQTKMKEASEAADKAKKSGLASKIFGWISAIASMVIGAILIATGVGAAVGAMMIVGGAVGVANMAIQQAAADGRISPETMKVLGPIMIAAEILVAIVSIAVTFGASAASTAMKAVKFATQAAD | 219 |
2 | -6.720 | 2y3h_A mol:protein length:118 NICKEL AND COBALT RESISTANCE PROTEIN CNRR | ali model follow.. | 13 | 20 | ...............PLDANEREILELKQDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEMRAGLKPEHRPAYDRVLIDALRRGSQ......................................................................................................... | 118 |
3 | -6.630 | 4wwb_A mol:protein length:118 Nickel and cobalt resistance protein CnrR | ali model follow.. | 13 | 20 | ...............PLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEMRAGLKPEHRPAFDRVLIDALRRGSQ......................................................................................................... | 118 |
4 | -6.210 | 5ihf_A mol:protein length:116 VirG-like protein | ali model follow.. | 5 | 23 | ...............KLTNDQITRIKKLHQQLETDVSQISMKGIKDGALIEV-IKSGKWDDAAVKQQLAAFSNIEQQARYYRVKYYFDLSKVLTPEQRQQVQQDLAQALE............................................................................................................. | 116 |
5 | -6.160 | 1xfj_A mol:protein length:261 conserved hypothetical protein | ali model follow.. | 14 | 73 | ..........................................................................................CYQIHSTIAIVADGSWGDARPEGDAVVSKTPGVICGAMAADCAPVLLVDPEARIVAAA---GALDGVVQSAVDRMVELGASPANITGVVGPCIKSYEVGLEFLHRFEADCPGSGRFFKPGASEDKRFFD | 205 |
6 | -6.050 | 4ox0_A mol:protein length:104 Developmental protein SEPALLATA 3 | ali model follow.. | 19 | 21 | .....................QQEYLKLKERYDALQRTQRNLLGED--LGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADG................................................................................................................ | 104 |
7 | -5.960 | 5vhw_A mol:protein length:1057 Glutamate receptor 2,Germ cell-specific gene 1-like protein | ali model follow.. | 13 | 920 | ...........................................................................................EELGGPGEKCRSFIDLAPASEKGVL------WLSVVSEVLYILLLVVGFLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVS------LGPCLAWGSFTCCMAASVTTLN................... | 1048 |
8 | -5.860 | 5bqn_A mol:protein length:885 Botulinum neurotoxin type D,Botulinum neurotoxin type D | ali model follow.. | 11 | 569 | ....................................................................................TLTTSVEEALGYSNKIYTFLPSLAEKVNKGVQAGLFLNWANEVVEDFTTNIMKKDTLDKISDVSVII--YIGPALNIGNSALRGNF--NQAFATAGVAFL-FTIPALGVFTFYS..................... | 684 |
9 | -5.800 | 3zg1_A mol:protein length:148 NICKEL AND COBALT RESISTANCE PROTEIN CNRR | ali model follow.. | 13 | 50 | ...............PLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEARAGLKPEHRPAYDRVLIDALRRGSQ......................................................................................................... | 148 |
10 | -5.790 | 4clv_A mol:protein length:148 NICKEL-COBALT-CADMIUM RESISTANCE PROTEIN NCCX | ali model follow.. | 13 | 50 | ...............PLDSNEREILELKEEEFTARRREIESRLRAANGKLAESIAKNPQWSPEVEEATREVERAAADLQRATLVHVFEMRAGLKPEHRAAYDRVLVDALKRGSQ......................................................................................................... | 148 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30. |