current user: public

If you have questions about the server, please let us know.

Query: 3wxx_B mol:protein length:219 AopB, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .
# Score Template Links and tools%idFirst GQGVVLPQPMPGIGQQMSPPKQQELDQLRKTAQLGTANAAKLLGSSTLLNKLAFASPEEFEIELSKMTSELEQTQKKLKLADLERIRAENLKKIDENQTKMKEASEAADKAKKSGLASKIFGWISAIASMVIGAILIATGVGAAVGAMMIVGGAVGVANMAIQQAAADGRISPETMKVLGPIMIAAEILVAIVSIAVTFGASAASTAMKAVKFATQAADLast
1 -104.0003wxx_B mol:protein length:219 AopB  ali model  100  1GQGVVLPQPMPGIGQQMSPPKQQELDQLRKTAQLGTANAAKLLGSSTLLNKLAFASPEEFEIELSKMTSELEQTQKKLKLADLERIRAENLKKIDENQTKMKEASEAADKAKKSGLASKIFGWISAIASMVIGAILIATGVGAAVGAMMIVGGAVGVANMAIQQAAADGRISPETMKVLGPIMIAAEILVAIVSIAVTFGASAASTAMKAVKFATQAAD 219
2 -6.7202y3h_A mol:protein length:118 NICKEL AND COBALT RESISTANCE PROTEIN CNRR  ali model follow..  13  20...............PLDANEREILELKQDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEMRAGLKPEHRPAYDRVLIDALRRGSQ......................................................................................................... 118
3 -6.6304wwb_A mol:protein length:118 Nickel and cobalt resistance protein CnrR  ali model follow..  13  20...............PLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEMRAGLKPEHRPAFDRVLIDALRRGSQ......................................................................................................... 118
4 -6.2105ihf_A mol:protein length:116 VirG-like protein  ali model follow..  23...............KLTNDQITRIKKLHQQLETDVSQISMKGIKDGALIEV-IKSGKWDDAAVKQQLAAFSNIEQQARYYRVKYYFDLSKVLTPEQRQQVQQDLAQALE............................................................................................................. 116
5 -6.1601xfj_A mol:protein length:261 conserved hypothetical protein  ali model follow..  14  73..........................................................................................CYQIHSTIAIVADGSWGDARPEGDAVVSKTPGVICGAMAADCAPVLLVDPEARIVAAA---GALDGVVQSAVDRMVELGASPANITGVVGPCIKSYEVGLEFLHRFEADCPGSGRFFKPGASEDKRFFD 205
6 -6.0504ox0_A mol:protein length:104 Developmental protein SEPALLATA 3  ali model follow..  19  21.....................QQEYLKLKERYDALQRTQRNLLGED--LGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADG................................................................................................................ 104
7 -5.9605vhw_A mol:protein length:1057 Glutamate receptor 2,Germ cell-specific gene 1-like protein  ali model follow..  13  920...........................................................................................EELGGPGEKCRSFIDLAPASEKGVL------WLSVVSEVLYILLLVVGFLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVS------LGPCLAWGSFTCCMAASVTTLN................... 1048
8 -5.8605bqn_A mol:protein length:885 Botulinum neurotoxin type D,Botulinum neurotoxin type D  ali model follow..  11  569....................................................................................TLTTSVEEALGYSNKIYTFLPSLAEKVNKGVQAGLFLNWANEVVEDFTTNIMKKDTLDKISDVSVII--YIGPALNIGNSALRGNF--NQAFATAGVAFL-FTIPALGVFTFYS..................... 684
9 -5.8003zg1_A mol:protein length:148 NICKEL AND COBALT RESISTANCE PROTEIN CNRR  ali model follow..  13  50...............PLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEARAGLKPEHRPAYDRVLIDALRRGSQ......................................................................................................... 148
10 -5.7904clv_A mol:protein length:148 NICKEL-COBALT-CADMIUM RESISTANCE PROTEIN NCCX  ali model follow..  13  50...............PLDSNEREILELKEEEFTARRREIESRLRAANGKLAESIAKNPQWSPEVEEATREVERAAADLQRATLVHVFEMRAGLKPEHRAAYDRVLVDALKRGSQ......................................................................................................... 148

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 6   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.